Ssub007181.2
Basic Information
- Insect
- Sarcophaga subvicina
- Gene Symbol
- -
- Assembly
- GCA_936440885.2
- Location
- CAKZFJ020000057.1:4546734-4566722[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 4.7e-11 1.4e-07 32.1 0.0 1 38 543 581 543 586 0.89 2 4 1.5e-13 4.2e-10 40.1 0.0 2 39 598 635 597 638 0.94 3 4 1.7e-17 5e-14 52.7 0.0 1 45 652 697 652 697 0.98 4 4 5.3e-19 1.5e-15 57.5 0.0 1 43 704 747 704 749 0.96
Sequence Information
- Coding Sequence
- ATGACACAACAGCACAACGGTCTATTGCGTACCGCTGAACAGTTAAAGATTAAAGGTCTGTGCGAGACAGCAGAGAACGCCGACGATCTGAATGATACGGCCACAGCTACAATAACAGTATCCGAAAATATACAGCAAGCAGTCGTTGGTAATATTGTGAATGCAACAGTAGTGCCGGGACAACAATCACCTCCAATACCCCACCAACAGCATCAGACGCCACAGCAGCATCAACAGCAATTAACAAATACCGCCGTCTTAAGTCCGAGTAGTGCTCAACAGTTAGCCGCTGCTGGACAATTGGTCACATCCACACCTGCCACAACGccccaacaacagcagcagcagcaacaacagcagctggGCCGTAAATCGCGGGTACGTAAACGTTCGAAATCACCCGAtttacaattgcaacaacagcaacagcagcatcatcaacagcaacaacaacagcagcaacaacatccGCAGGCAATActaatacaaaatcaaaatcaagcTGCCATTGTAAGTTTGCAACAGACATCAGCCGGTAATTATATACCCGTGTCGGGCGTGCAAACGGTAACCACGAGTATAGCGGGCGgtcaacagcaacagcaccagcaccagcaacAGACCACCATTGTTACGGCAGACGATTCGGATTCGGATAAGCCGTTGACGAAAATCTGTAAAACTGAAGCATCGTCAGCTTCACCGGCGTCTACATCATCGGCATCGGCCTCAAATAATGCTGGTGGCGTAACTGCGGTCACAGCTTCGGGTACAGCGATCGTAACACAAATTGTAGTAGCAAGAGAcggaaaagataaaaatatgaCTAGTTTAGGCATGGGAATGAATGGCGGCATACTTGGAGTCCCTATGGGATTTTTAGATTTCGCTCCTGAACCACCGGCACCATCAGCAACACCAGTTACGGTTACAGAACACGTTGATCTATCCTGTAACCCCAGCACGGATACACGAGATTTATCAAATCCCTCAGAACCGCTCGATATCGACAATCACTTGGCTCAGCATATGATACAACGGCTCGATCAATCTCCAATGCATTCGATACATCATCAAACCGGTGACGAATCAAATTCGAATCTGGTTCAACACATAAAAAGCGAAGTTATCGACGCCAAACAGCAGgcccaacaacagcagcaacaacagcaagcaGCTGCAGCGGCACACCATCAAgcccaacagcagcagcaacagttgCATGCTCAGCAGTTGGCAGCAGCGCAAGGACAAGCacatcagcaacagcagcaacaacaacaacaggccgcccatcaacaacaacaacagcaggctgcacatcagcagcaacaacaacagcaccacCAACAGCAGGCCCACCAGCAGCATCATCAGGAAATAACAGGAGCCACCGTAATGGAGATTGATCCGAGCCAAATAAAACATGAGCCGGGCATGATAATAACACCGGAAATTGTAAATATGATGACGACAGGGCATATGGAGATGTACAATTCCGATACGAGCGATGATTCAATGATGATTGCCAATGGTTCACCCCATGATCAAAATGAACCCCATTATACGAATTTAGATCAACAGCATGGCGATATGAAAGGTCAGTTTAATGGTCCCAAAACTTGGACACAAGATGATATGAATTCAGCTTTAGATGCACTGAAGAATCAAAACATGAGCCTGACGAAAGCATCCGTTACCTATGGCATCCCCTCAACAACCCTATGGCAAAGGGCCCATCGCATGGGCATCGAAACACCGAAGAAGGAAGGAGGTACCAAATCATGGAACGAAGACTCACTCAACAATGCATTGGAGGCGTTACGTTCGGGACAAATATCGGCTAATAAAGCATCGAAAGCCTTTGGTATACCTTCGTCGACGTTGTATAAAATAGCACGACGTGAAGGTATACGATTGGCAGCGCCGTTTAATGCCGCCCCCACCACCTGGACACCAGAAGATCTGGAGCGAGCCTTAGAGGCCATACGAGCTGGTCACACATCCGTACAGAAGGCAAGTGCTGAATTTGGTATACCAACAGGCACATTATATGGTCGCTGTAAACGTGAAGGTATTGAATTGTCACGTTCAAATCCCACACCCTGGTCGGAAGATGCTATGAATGAAGCTTTAAATTCTGTGCGCATTGGCCAAATGTCTATCAATCAGGCGGCTATACACTATAATCTACCCTATAGCTCCTTATATGGCCGTTTTAAACGGGGCAAATATGATGTGGCCAACACAAGTGGTACTTCCATTAATAATACGTCGGGAAATACGTCCGGTAGTATTGAAATTATTGAACATAGTCAAGAGAATTCGTTGCCTATGTTTCAGCAACAATTCCAATATAGTCCATCGCCGCATCAGCAACAGCATGGCGGCAGTAGTACACCACAGCAAAGTCAAACGCCACAGCATCTACAACAGCATGTGGTGCATattcaacagcaacatcatcaacaGTCGCAACATGCGCAACATATCCAACAGCAGGATGTTGTAACCTCATCGAGTCAACAGCAAGTACAGCAACATGCCAGCAATTCGGCAGCctcccaacaacaacagcaacaacaacaaattcaacaaatttatcATCATCACAACACACCTGAGAGAAGTTGA
- Protein Sequence
- MTQQHNGLLRTAEQLKIKGLCETAENADDLNDTATATITVSENIQQAVVGNIVNATVVPGQQSPPIPHQQHQTPQQHQQQLTNTAVLSPSSAQQLAAAGQLVTSTPATTPQQQQQQQQQQLGRKSRVRKRSKSPDLQLQQQQQQHHQQQQQQQQQHPQAILIQNQNQAAIVSLQQTSAGNYIPVSGVQTVTTSIAGGQQQQHQHQQQTTIVTADDSDSDKPLTKICKTEASSASPASTSSASASNNAGGVTAVTASGTAIVTQIVVARDGKDKNMTSLGMGMNGGILGVPMGFLDFAPEPPAPSATPVTVTEHVDLSCNPSTDTRDLSNPSEPLDIDNHLAQHMIQRLDQSPMHSIHHQTGDESNSNLVQHIKSEVIDAKQQAQQQQQQQQAAAAAHHQAQQQQQQLHAQQLAAAQGQAHQQQQQQQQQAAHQQQQQQAAHQQQQQQHHQQQAHQQHHQEITGATVMEIDPSQIKHEPGMIITPEIVNMMTTGHMEMYNSDTSDDSMMIANGSPHDQNEPHYTNLDQQHGDMKGQFNGPKTWTQDDMNSALDALKNQNMSLTKASVTYGIPSTTLWQRAHRMGIETPKKEGGTKSWNEDSLNNALEALRSGQISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGHTSVQKASAEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRIGQMSINQAAIHYNLPYSSLYGRFKRGKYDVANTSGTSINNTSGNTSGSIEIIEHSQENSLPMFQQQFQYSPSPHQQQHGGSSTPQQSQTPQHLQQHVVHIQQQHHQQSQHAQHIQQQDVVTSSSQQQVQQHASNSAASQQQQQQQQIQQIYHHHNTPERS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00979276;
- 90% Identity
- iTF_00258784;
- 80% Identity
- -