Pter030053.1
Basic Information
- Insect
- Protophormia terraenovae
- Gene Symbol
- -
- Assembly
- GCA_951394005.1
- Location
- OX596077.1:42270438-42282260[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 4.3e-11 1.5e-07 32.1 0.0 1 38 537 575 537 580 0.89 2 4 1.3e-13 4.8e-10 40.1 0.0 2 39 592 629 591 632 0.94 3 4 1.6e-17 5.7e-14 52.7 0.0 1 45 646 691 646 691 0.98 4 4 4.5e-19 1.6e-15 57.6 0.0 1 43 698 741 698 743 0.96
Sequence Information
- Coding Sequence
- atgGGTCTTTTACGCACCGCTGAACAGTTAAAAATCAAAGGTCTTTGTGAGACAGCAGAAAATGCCGATGATCTGAATGATACGGCCACAGCAACAATAACAGTTTCAGAGAATATACAACAAGCTGTCGTTGGTAATATTGTCAATGCTACAGTAGTGCCGGGCCAGCAATCTCCTCCAATACCCCACCAACAACATCAgccacaacaacagcagcagcaacaacagcaacaccACCAACAGCAACAGCATCAACACCAGCAAACACAACAAATTACCACAACCGCTGTGCTAAGTCCGGGTAGTGCTCAACAATTTGCAGCTGCCGGACAATTGGTAACATCAACACCTGCCTCAACACCccagcaacaacagcagcaacaacaacgaAAATCTAGAGTACGTAAACGTTCGAAATCGCCCGATCTACAGCAGCtgcaacaacagcaacagaATCAACAACATCCCCAGgcaatattaatacaaaatcaAAATCAAGCTGCTATTGTTAGTCTACAACAGACATCGGCTGGAAATTATATACCCGTGTCGGGAGTTCAGACAGTAACCACTAGTGTAGCGCCGGGTGgccaacagcaacaacaacagacCACCATTGTAACGGCCGACGATTCGGATTCGGATAAACCGTCACTGCAAAAGATTTGTAAAACTGAGGCGTCCTCAGCTTCACCGGCGTCCACTTCATCGGCATCAGCATCAAATAATGCTGGTGGCGTAACTGCGGTCACAGCTTCGGGTACAGCGATCGTAACACAAATTGTAGTAGCAAGAGACggaaaagataataaaaatatgactaGTTTAGGCATGGGAATGaatGGTGGCATTCTAGGAGTCCCTATGGGCTTTTTAGATTTTGCCCCTGAACCACCGGCACCCTCAGCAACACCTGTCACCGTTACAGAACACGTAGATTTATCCTGTAACCCCAGTACGGATACCAGAGATTTATCAAATCCCTCAGAACCGCTCGATATCGACAATCATTTGGCTCAGCATATGATACAACGGCTTGATCAATCTCCCATGCATACCATACATCATCAGACTGGTGACGAATCAAATTCTAATCTGGTACAGCATATAAAAAGTGAAGTAATCGATGccaaacaacagcaacaacaggtccagcaacagcagcaacaacaggcTGCTGCAGCAGCCCATCATCAAGCCCAACAACAACAGTTGCATGCACAACAATTAGCAGCAGCGCAAGGACAAACAcatcaacagcagcaacaacaggcAGCCcatcaacagcagcaacaacaacaacagcagcagcaggcACATCAACAACATCATCAGCAACAAGCCCACCAGCAGCATCATGAGATAAGCGGAGCCACCGTTATGGAGATTGATCCAAGCCAAATAAAACATGAGCCGGGCATGATAATAACACCGGAAATTGTAAATATGATGACGACAGGACATATGGACATGTACAATTCCGATACGAGCGATGATTCAATGATGATTGCTAACGGTTCACCACATGATCAAAATGAACCCCATTACACAAATCTAGATCAGCAGCATGGCGATATGAAAGGTCAGTTTAATGGTCCCAAAACTTGGACACAAGATGATATGAATTCAGCTTTAGATGCACTGAAGAATCAAAACATGAGCCTGACGAAAGCATCCGTTACCTATGGCATCCCCTCAACCACCCTCTGGCAAAGGGCCCACCGCATGGGCATCGAAACACCCAAGAAGGAAGGAGGTACCAAATCATGGAACGAAGACTCACTTAACAATGCACTGGAGGCTTTACGTTCGGGACAAATATCGGCCAATAAAGCATCGAAAGCCTTTGGTATACCTTCGTCGACGTTGTATAAAATAGCACGACGTGAAGGTATACGATTGGCAGCGCCGTTTAATGCCGCCCCAACCACCTGGACGCCGGAAGATTTGGAAAGAGCCTTGGAGGCAATACGTGCGGGTCATACATCGGTACAGAAGGCAAGTGCAGAATTTGGTATACCCACAGgcaCTTTATATGGACGCTGTAAACGTGAGGGCATTGAATTATCCCGTTCAAATCCTACACCTTGGTCGGAAGATGCTATGAATGAAGCTTTAAATTCTGTGCGcattGGTCAAATGTCTATAAATCAGGCTGCTATCCATTATAATTTACCGTATAGTTCTTTATATGGTCGTTTTAAACGTGGCAAATATGATGTTACTAACACGAGCGGAACTTCCATTAATAATACATCGGGCAATACCTCTGGTAGTATTGAAATTATTGAACATAGTCAAGAGAATTCGtTGCCTATGTTTCAGCAACAATTCCAATATAGTCCATCACCGCATCAGCAACAGCACGGTGGTAGTAGTACACCACAACAGAGTCAAACGCCACAGCATCTACAACAACATGTTGTGCACATACAGCAACAACATCATCAACAACAGAGCCAACATGCGCAACATATCCAACAGCAGGATGTTGTAACATCGTCAAGTCAACAACAGCAAGTCCAACAGCAACAACATGCTAGCAATTCGGCAGCCtcccaacaacaacaacagcagcagcaacaaattCAACAAATCTATCATCATCACAGTACACCCGAGAGAAGTTGA
- Protein Sequence
- MGLLRTAEQLKIKGLCETAENADDLNDTATATITVSENIQQAVVGNIVNATVVPGQQSPPIPHQQHQPQQQQQQQQQHHQQQQHQHQQTQQITTTAVLSPGSAQQFAAAGQLVTSTPASTPQQQQQQQQRKSRVRKRSKSPDLQQLQQQQQNQQHPQAILIQNQNQAAIVSLQQTSAGNYIPVSGVQTVTTSVAPGGQQQQQQTTIVTADDSDSDKPSLQKICKTEASSASPASTSSASASNNAGGVTAVTASGTAIVTQIVVARDGKDNKNMTSLGMGMNGGILGVPMGFLDFAPEPPAPSATPVTVTEHVDLSCNPSTDTRDLSNPSEPLDIDNHLAQHMIQRLDQSPMHTIHHQTGDESNSNLVQHIKSEVIDAKQQQQQVQQQQQQQAAAAAHHQAQQQQLHAQQLAAAQGQTHQQQQQQAAHQQQQQQQQQQQAHQQHHQQQAHQQHHEISGATVMEIDPSQIKHEPGMIITPEIVNMMTTGHMDMYNSDTSDDSMMIANGSPHDQNEPHYTNLDQQHGDMKGQFNGPKTWTQDDMNSALDALKNQNMSLTKASVTYGIPSTTLWQRAHRMGIETPKKEGGTKSWNEDSLNNALEALRSGQISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGHTSVQKASAEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRIGQMSINQAAIHYNLPYSSLYGRFKRGKYDVTNTSGTSINNTSGNTSGSIEIIEHSQENSLPMFQQQFQYSPSPHQQQHGGSSTPQQSQTPQHLQQHVVHIQQQHHQQQSQHAQHIQQQDVVTSSSQQQQVQQQQHASNSAASQQQQQQQQQIQQIYHHHSTPERS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00979276;
- 90% Identity
- iTF_00258784;
- 80% Identity
- -