Ltes037103.1
Basic Information
- Insect
- Linnaemya tessellans
- Gene Symbol
- -
- Assembly
- GCA_951800035.1
- Location
- OX637534.1:94985925-95001808[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 9.8e-11 2.4e-07 32.1 0.0 1 38 514 552 514 557 0.89 2 4 3e-13 7.5e-10 40.1 0.0 2 39 569 606 568 609 0.94 3 4 3.6e-17 8.9e-14 52.7 0.0 1 45 623 668 623 668 0.98 4 4 1.1e-18 2.7e-15 57.6 0.0 1 43 675 718 675 720 0.96
Sequence Information
- Coding Sequence
- ATGCAATTGTTAAAAATCAAAGGTCTTTGTGAGACAGCCGAAAATGCCGATGATCTGAACGATACGGCCACAGCAACAATAACAGTATCAGAGAATATACAACAAGCTGTCGTTGGTAATATTGTCAATGCCACAGTAGTGCCGGGACAGCAATCTCCTCCAATACCCCACCAACAACATCAgccacaacagcaacagcagcatcagcaccagcaacaacaattaacCACTACCGCCGTTTTAAGTCCCGGAAGTGCTCAACAGCTAGCAGTTGCCGGACAACTGGTAACCTCAACACCTGCCACAACACCGCAACAGCAactacagcagcagcaacaacgaAAATCCAGAGTACGGAAACGTTCAAAATCCCCCGATCTACAgttgcaacaacagcaacagcaccaccaccagcagcaacaaaatcaacagcacccacaggcaattttaatacaaaatcaaaatcaagCTGCTATTGTCAGTCTACAACAGACATCGGCTGGCAACTATATACCAGTATCCGGTGTACAAACGGTAACTACTAGTGTAGCGGGTggccaacagcagcaacagacCACCATTGTAACAGCGGACGATTCGGATTCGGACAAACCCTCCCTACAAAAGATTTGCAAAACTGAAACGTCTGCAGCATCACCGGCGTCCACTTCATCGATATCAGCAACAAATAATGCTGGTGGCGTAACTGCTGTCACAGCATCGGGTACAGCGATCGTAACACAAATTGTAGTAGCAAGAGACGGAAAAgataaaaatatgactagtttAGGCATGGGAATGaatGGTGGCATTCTAGGAGTCCCTATGGGCTTTTTAGATTTTGCCCCCGAACCACCGGCACCCTCAGCAACACCTGTCACAGTTACTGAACATGTAGATTTATCATGTCACCCCAGCTCGGATACCCGAGACTTATCAAATCCTTCAGAACCGCTCGATATCGACAATCATTTGGCTCAGCACATGATACAACGGCTCGATCAATCTCCCATGCATACCATACATCATCAGACTGGCGACGAATCAAATTCGAATCTGGTTCAGCATATAAAAAGTGAAGTACTTGATGCCAAACAGCAGCAACAGGCCCAACAGCAGCATCAGCAAGCTGCAGCCGCTCATCATCAAgcccaacaacaacagctgcaTGCACAGCAATTGGCAGCGGCACAAGGACAGACacatcagcaacaacagcaggcAGCCcaccagcaacagcagcaggCACATCAACATCACCAGCAACAGGCTCACCAGCAGCATCATCAAGAGATTACCGGTGCCACCGTCATGGAGATTGATCCGAGCCAAATAAAACATGAACCGGGCATGATAATAACACCGGAAATTGTAAATATGATGACGACAGGGCATATGGACATGTACAACTCCGATACGAGCGATGATTCAATGATGATTGCCAACGGTTCACCACATGATCAAAATGAACCCCATTACACAAATTTAGATCAACAGCATGGCGATATGAAAGGTCAGTTTAATGGTCCCAAAACTTGGACACAAGATGATATGAATTCAGCTTTAGATGCATTGAAGAATCAAAACATGAGCCTGACGAAAGCATCCGTTACCTATGGCATCCCCTCAACCACACTCTGGCAAAGGGCCCACCGCATGGGCATCGAAACACCGAAGAAGGAAGGAGGTACGAAATCATGGAACGAAGACTCGCTAAACAATGCTTTGGAAGCTTTGCGTTCGGGACAAATATCGGCCAATAAAGCATCAAAAGCCTTTGGTATACCTTCGTCGACGTTGTATAAAATAGCACGACGTGAAGGTATACGATTGGCGGCGCCGTTTAATGCCGCTCCCACCACCTGGACGCCAGAAGATTTGGAAAGGGCTTTGGAAGCAATACGTGCGGGTCATACATCGGTACAGAAGGCAAGTGCAGAATTTGGTATACCCACAGGCACATTGTACGGCCGTTGTAAACGTGAGGGCATTGAACTATCCCGCTCGAATCCAACACCTTGGTCTGAAGATGCCATGAATGAAGCTTTAAATTCTGTGCGCATCGGCCAAATGTCTATCAATCAAGCTGCTATCCACTATAATCTACCGTATAGTTCTTTATATGGTCGCTTTAAACGGGGCAAATATGATGTGGCCAACACAAGCGGTACTTCCATAAATAATACTTCGGGCAATACCTCCGGTAGTATTGAAATCATAGAACATAGTCAAGAGAATTCGTTGCCTATGTTTCAGCAACAGTTCCAATATAGTCCATCGCCGCATCAGCAACAGCACGGCGGCAGTAGTACACCGCAACAAAGCCAAACGCCACAGCATCTACAGCAGCATGTTGTGCATATACAgcaacatcatcagcaacagACCCAACATGCGCAACATATCCAACAGCAAGATGTTGTAACATCGTCAAGTCAACAGCAAgtccaacagcaacaacatgcCAGCAATTCGGCAGCCTCccaacagcaacaaattcagcAAATCTATCATCATCACAGTACACCCGAGAGAAGTTGA
- Protein Sequence
- MQLLKIKGLCETAENADDLNDTATATITVSENIQQAVVGNIVNATVVPGQQSPPIPHQQHQPQQQQQHQHQQQQLTTTAVLSPGSAQQLAVAGQLVTSTPATTPQQQLQQQQQRKSRVRKRSKSPDLQLQQQQQHHHQQQQNQQHPQAILIQNQNQAAIVSLQQTSAGNYIPVSGVQTVTTSVAGGQQQQQTTIVTADDSDSDKPSLQKICKTETSAASPASTSSISATNNAGGVTAVTASGTAIVTQIVVARDGKDKNMTSLGMGMNGGILGVPMGFLDFAPEPPAPSATPVTVTEHVDLSCHPSSDTRDLSNPSEPLDIDNHLAQHMIQRLDQSPMHTIHHQTGDESNSNLVQHIKSEVLDAKQQQQAQQQHQQAAAAHHQAQQQQLHAQQLAAAQGQTHQQQQQAAHQQQQQAHQHHQQQAHQQHHQEITGATVMEIDPSQIKHEPGMIITPEIVNMMTTGHMDMYNSDTSDDSMMIANGSPHDQNEPHYTNLDQQHGDMKGQFNGPKTWTQDDMNSALDALKNQNMSLTKASVTYGIPSTTLWQRAHRMGIETPKKEGGTKSWNEDSLNNALEALRSGQISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGHTSVQKASAEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRIGQMSINQAAIHYNLPYSSLYGRFKRGKYDVANTSGTSINNTSGNTSGSIEIIEHSQENSLPMFQQQFQYSPSPHQQQHGGSSTPQQSQTPQHLQQHVVHIQQHHQQQTQHAQHIQQQDVVTSSSQQQVQQQQHASNSAASQQQQIQQIYHHHSTPERS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00979276;
- 90% Identity
- iTF_00258784;
- 80% Identity
- -