Sper021666.1
Basic Information
- Insect
- Sarcophaga peregrina
- Gene Symbol
- -
- Assembly
- GCA_014635995.1
- Location
- CM025793.1:46289706-46310666[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 5.7e-11 1.1e-07 32.0 0.0 1 38 563 601 563 606 0.89 2 4 1.8e-13 3.5e-10 40.0 0.0 2 39 618 655 617 658 0.94 3 4 2.1e-17 4.2e-14 52.6 0.0 1 45 672 717 672 717 0.98 4 4 6.3e-19 1.3e-15 57.5 0.0 1 43 724 767 724 769 0.96
Sequence Information
- Coding Sequence
- ATGACACCCAATCAAGTCATTACCGGTAAACCGGGGAAGTTTGCTCTATTATTGGCACATATAATATCGAACGAaGGTCTATTGCGTACCGCTGAACAGTTAAAGATTAAAGGTCTGTGCGAGACAGCAGAGAACGCCGACGATCTGAATGATACGGCCACAGCCACAATAACAGTATCCGAAAATATCCAGCAAGCAGTCGTTGGCAATATTGTGAATGCAACAGTAGTGCCGGGACAACAATCACCTCCAATACCCCACCAACAGCATCAGACgccacagcagcagcagcatcagcagcaatTAACAAATACCGCCGTCTTAAGTCCGAGTAGTGCTCAACAGTTAGCCGCTGCTGGACAATTGGTCACATCCACACCTGCCACAACgccccaacaacaacagcagcagcaacaacagcagcagctggGCCGTAAATCGCGAGTACGTAAACGTTCAAAATCACCCGAtttacaattgcaacaacagcaacagcagcaccatcaacagcatcaacaacaacagcaacaacaacatccgcAGGCAATActaatacaaaatcaaaatcaagctGCCATTGTAAGTTTGCAACAGACATCGGCCGGTAATTATATACCCGTGTCGGGCGTGCAAACGGTAACCACCAGTGTAGCGGGCggtcaacaacagcaacagcagcaccaGCAACAGACCACCATTGTTACGGCAGACGATTCGGATTCGGATAAGCCGCTGcataaaatctgtaaaactGAAGCATCGTCAGCTTCACCGGCGTCTACATCATCGACATCGGCCTCAAATAATGCTGGTGGCGTAACTGCGGTCACAGCTTCGGGTACAGCGATCGTAACACAAATTGTAGTAGCAAGAGAcggaaaagataaaaatatgaCTAGTTTAGGCATGGGAATGAATGGCGGCATACTTGGAGTCCCTATGGGCTTTTTAGATTTCGCCCCTGAACCACCGGCACCATCAGCAACACCAGTTACGGTTACAGAACACGTTGATCTATCCTGTAACCCCAGTACGGATACACGAGATTTATCAAATCCCTCAGAACCGCTCGATATCGACAATCACTTGGCTCAGCATATGATACAACGGCTCGATCAATCTCCAATGCATTCTATACATCATCAAACCGGTGACGAATCAAATTCGAACCTGGTTCAACATATAAAAAGCGAAGTTATCGACGCCAAACAGCAGgcccagcaacagcagcaacaacagcaagcaGCTGCAGCGGCACATCATCAAgcccaacagcagcagcaacaattgcATGCTCAACAATTGGCAGCAGCGCAAGGACAAgcacatcaacagcaacagcaggccgcccatcaacaacaacaacaacagcaagctgcacatcagcagcaacaacaacagcaccacCAACAGCAGGCCCACCAGCAACACCATCAGGAAATAACTGGAGCCACCGTAATGGAGATTGATCCGAGCCAAATAAAACATGAGCCGGGCATGATAATAACACCGGAAATTGTAAATATGATGACAACAGGGCATATGGAGATGTACAATTCCGATACGAGCGATGATTCAATGATGATTGCCAATGGTTCACCCCATGATCAAAATGAACCCCATTATACGAATTTAGATCAACAGCATGGCGATATGAAAGGTCAGTTTAATGGTCCCAAAACTTGGACACAAGATGATATGAATTCAGCTTTAGATGCACTGAAGAATCAAAACATGAGCCTGACGAAAGCATCCGTTACCTATGGCATCCCCTCAACAACCCTATGGCAAAGGGCCCATCGCATGGGCATCGAAACACCGAAGAAGGAAGGAGGTACCAAATCATGGAACGAAGACTCACTCAACAATGCATTGGAAGCGTTACGTTCGGGACAAATATCGGCTAATAAAGCATCGAAAGCCTTTGGTATACCTTCGTCGACGTTGTATAAAATAGCACGACGTGAAGGTATACGATTGGCAGCGCCGTTTAATGCCGCCCCCACCACCTGGACACCAGAAGATCTAGAGCGAGCCTTAGAGGCCATACGCGCTGGTCACACATCGGTACAGAAGGCAAGTGCTGAATTTGGTATACCAACAGgcaCTTTATATGGTCGCTGTAAACGTGAAGGTATTGAATTGTCACGTTCAAATCCCACACCCTGGTCGGAAGATGCTATGAATGAAGCTTTAAATTCTGTGCGCATTGGCCAAATGTCTATCAATCAGGCGGCTATACACTATAATCTACCCTATAGCTCTTTATATGGCCGTTTTAAGCGGGGCAAATATGATGTGGCCAACACAAGTGGTACTTCCATTAACAATACATCGGGAAATACCTCCGGTAGTATTGAAATTATTGAGCATAGTCAAGAGAATTCGTTGCCTATGTTTCAGCAACAATTCCAATATAGTCCATCGCCGCATCAGCAACAGCATGGCGGCAGTAGTACGCCACAGCAAAGTCAAACGCCACAGCATCTACAGCAGCATGTGGTGCATAttcaacagcaacatcatcaacagTCGCAACATGCGCAACATATCCAACAGCAGGATGTTGTTACCTCATCGAGTCAACAGCAAGTACAGCAACATGCCAGCAATTCGGCAGCctcccaacaacaacaacaacagcaacaacaacaaattcaacaaatttatcATCATCACAATACACCCGAGAGAAGTTGA
- Protein Sequence
- MTPNQVITGKPGKFALLLAHIISNEGLLRTAEQLKIKGLCETAENADDLNDTATATITVSENIQQAVVGNIVNATVVPGQQSPPIPHQQHQTPQQQQHQQQLTNTAVLSPSSAQQLAAAGQLVTSTPATTPQQQQQQQQQQQLGRKSRVRKRSKSPDLQLQQQQQQHHQQHQQQQQQQHPQAILIQNQNQAAIVSLQQTSAGNYIPVSGVQTVTTSVAGGQQQQQQHQQQTTIVTADDSDSDKPLHKICKTEASSASPASTSSTSASNNAGGVTAVTASGTAIVTQIVVARDGKDKNMTSLGMGMNGGILGVPMGFLDFAPEPPAPSATPVTVTEHVDLSCNPSTDTRDLSNPSEPLDIDNHLAQHMIQRLDQSPMHSIHHQTGDESNSNLVQHIKSEVIDAKQQAQQQQQQQQAAAAAHHQAQQQQQQLHAQQLAAAQGQAHQQQQQAAHQQQQQQQAAHQQQQQQHHQQQAHQQHHQEITGATVMEIDPSQIKHEPGMIITPEIVNMMTTGHMEMYNSDTSDDSMMIANGSPHDQNEPHYTNLDQQHGDMKGQFNGPKTWTQDDMNSALDALKNQNMSLTKASVTYGIPSTTLWQRAHRMGIETPKKEGGTKSWNEDSLNNALEALRSGQISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGHTSVQKASAEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRIGQMSINQAAIHYNLPYSSLYGRFKRGKYDVANTSGTSINNTSGNTSGSIEIIEHSQENSLPMFQQQFQYSPSPHQQQHGGSSTPQQSQTPQHLQQHVVHIQQQHHQQSQHAQHIQQQDVVTSSSQQQVQQHASNSAASQQQQQQQQQQIQQIYHHHNTPERS*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00979276;
- 90% Identity
- iTF_00258784;
- 80% Identity
- -