Marg010379.1
Basic Information
- Insect
- Metopia argyrocephala
- Gene Symbol
- -
- Assembly
- GCA_963576795.1
- Location
- OY756208.1:189962679-189979267[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 6.6e-11 1.5e-07 32.1 0.0 1 38 533 571 533 576 0.89 2 4 2e-13 4.8e-10 40.1 0.0 2 39 588 625 587 628 0.94 3 4 2.4e-17 5.7e-14 52.7 0.0 1 45 642 687 642 687 0.98 4 4 7.4e-19 1.7e-15 57.5 0.0 1 43 694 737 694 739 0.96
Sequence Information
- Coding Sequence
- ATGCGCACAACAGGCACAAAATCTCAAAACGAATTGCGCAGCGAAAAGGGTCTTTTACGTACCgctgaacaattaaaaattaaaggtcTGTGCGAGACAGCAGAGAATGCCGATGATTTGAATGATACAGCAACAGCTACAATAACAGTATCCGAAAATATACAGCAAGCAGTCGTTGGCAATATTGTGAACACTACAGTAGTGCCGGGACAACCCTCACCGCCTATACCCCACCAACAGCACCAGCCATCACAACAGCAATTAACAAATACCGCCGTCTTAAGTCCGGGCAGTGCACAACAATTAGCCGCTGCGGGACAATTGGTCACATCAACACCTGCCACAACaccccaacaacaacaacaacaattgggACGTAAATCAAGAGTACGTAAACGTTCAAAATCACCCGATTTACAattgcaacagcaacagcagcaacatcatcaacaaagccaacagcagcagcaacatccGCAGACAATATTAATCCAAAATCAAAATCAGGCTGCCATTGTCAGTTTGCAACAGACATCAGCCGGTAATTATATACCCGTGTCAGGAGTACAAACTGTTACCACAAGCATAGCGGGTggtcaacaacagcagcaacaacaacataccACCATTGTTACAGCAGACGATTCAGATTCGGATAAACCTTCGttgcaaaaaatttgcaaaactgAAGCATCATCCGCTTCACCGGCATCTACATCATCGGCAACGGCTTCAAATAATGCTGGCGGCGTAACTGCTGTCACAGCTTCGGGTACAGCGATCGTAACACAAATTGTAGTAGCAAGAGACggaaaagataaaaatatgaCTAGTTTAGGCATGGGCATGAATGGTGGCATACTAGGAGTCCCTATGGGCTTTTTAGATTTTGCCCCTGAACCACCGGCACCATCAGCAACCCCAGTTACGGTTACAGAACACGTCGATTTATCTTGTAACCCCAGTACGGATACACGTGATTTATCAAaTCCCTCAGAACCGCTCGATATCGACAATCACTTGGCTCAGCATATGATACAACGGCTCGATCAATCTCCAATGCATTCGATACATCATCAGACCGGTGACGAGTCAAACTCGAATCTGGTGCAACATATAAAAAGTGAAGTTATTGATGTCAAACAACAGCAGGtccaacaacagcagcaacaagcAGCTGTAGCGGCACATCATCAAGCTCAGCAGCAACAATTACATGCCCAACAATTAGCAGCGCAAGGACAAGCACATCAACAACAGGCCGCCCATCAGCAACAGCAGCAAGCAGCTcatcagcagcaacaacaacagcaccaCCAACAACAGGCCCACCAACAGCATCATCAGGAAATAACCGGAGCCACCGTTATGGAGATTGATCCGAGCCAAATAAAACATGAGCCGGGCATGATAATTACACCAGAAATTGTAAATATGATGACGACAGGGCATATggaGATGTACAATTCCGATACGAGCGATGATTCAATGATGATTGCCAATGGTTCACCCCATGATCAAAACGAACCCCATTATACGAATTTAGATCAACAGCATGGCGATATGAAAGGTCAGTTTAATGGTCCCAAAACTTGGACACAAGATGATATGAATTCAGCTTTAGATGCATTGAAGAATCAAAACATGAGCCTGACGAAAGCATCCGTTACCTATGGCATCCCCTCAACTACACTATGGCAAAGGGCCCATCGAATGGGTATCGAAACACCGAAGAAGGAAGGAGGTACCAAATCATGGAATGAAGACTCACTCAACAATGCTTTGGAGGCCTTGCGTTCGGGACAAATATCGGCTAATAAAGCATCAAAAGCCTTTGGTATACCTTCGTCGACGTTGTATAAAATAGCACGACGTGAAGGTATACGATTGGCAGCGCCGTTCAATGCCGCCCCCACCACTTGGACACCAGAAGATTTAGAGCGAGCCTTAGAAGCCATACGTGCTGGTCATACATCAGTACAGAAAGCAAGTGCTGAATTTGGTATACCAACAGGTACTTTATATGGTCGTTGTAAACGCGAAGGCATTGAATTGTCGCGTTCAAATCCTACTCCCTGGTCGGAAGATGCTATGAATGAAGCTTTAAATTCTGTGCgCATTGGCCAAATGTCTATTAATCAGGCGGCCATACATTATAATTTACCCTATAGTTCTTTATATGGCCGCTTTAAACGCGGTAAATATGATGTGGCCAATACAAGTGGTACTTCCATTAATAATACTTCGGGTAATACCTCCGGTAGTATTGAAATTATTGAACATAGTCAAGAGAATTCCTTGCCTATGTTTCAGCAACAATTCCAATATAGTCCTTCGCCGCATCAACAGCAACATGGCGGCAGTAGTACACCACAACAAAGTCAAACACCACAGCATCTACAACAGCATGTGGTGCATATACAGCAACAGCATCATCAGCAATCGCAACATGCGCAACATATCCAACAGCAGGATGTTGTAACCTCATCGAGTCAACAGCAAgtccaacaacagcaacatgcCAGCAATTCGGCGGGTTctcaacagcagcaacaacagcaaattCAGCAAATCTATCATCATCACAGTACACCCGAAAGAAGTTGA
- Protein Sequence
- MRTTGTKSQNELRSEKGLLRTAEQLKIKGLCETAENADDLNDTATATITVSENIQQAVVGNIVNTTVVPGQPSPPIPHQQHQPSQQQLTNTAVLSPGSAQQLAAAGQLVTSTPATTPQQQQQQLGRKSRVRKRSKSPDLQLQQQQQQHHQQSQQQQQHPQTILIQNQNQAAIVSLQQTSAGNYIPVSGVQTVTTSIAGGQQQQQQQHTTIVTADDSDSDKPSLQKICKTEASSASPASTSSATASNNAGGVTAVTASGTAIVTQIVVARDGKDKNMTSLGMGMNGGILGVPMGFLDFAPEPPAPSATPVTVTEHVDLSCNPSTDTRDLSNPSEPLDIDNHLAQHMIQRLDQSPMHSIHHQTGDESNSNLVQHIKSEVIDVKQQQVQQQQQQAAVAAHHQAQQQQLHAQQLAAQGQAHQQQAAHQQQQQAAHQQQQQQHHQQQAHQQHHQEITGATVMEIDPSQIKHEPGMIITPEIVNMMTTGHMEMYNSDTSDDSMMIANGSPHDQNEPHYTNLDQQHGDMKGQFNGPKTWTQDDMNSALDALKNQNMSLTKASVTYGIPSTTLWQRAHRMGIETPKKEGGTKSWNEDSLNNALEALRSGQISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGHTSVQKASAEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRIGQMSINQAAIHYNLPYSSLYGRFKRGKYDVANTSGTSINNTSGNTSGSIEIIEHSQENSLPMFQQQFQYSPSPHQQQHGGSSTPQQSQTPQHLQQHVVHIQQQHHQQSQHAQHIQQQDVVTSSSQQQVQQQQHASNSAGSQQQQQQQIQQIYHHHSTPERS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00979276;
- 90% Identity
- iTF_00258784;
- 80% Identity
- -