Pgri051070.1
Basic Information
- Insect
- Pollenia griseotomentosa
- Gene Symbol
- -
- Assembly
- GCA_963931875.1
- Location
- OZ007564.1:81751558-81759731[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 9.3e-11 2.5e-07 32.1 0.0 1 38 530 568 530 573 0.89 2 4 2.9e-13 7.7e-10 40.1 0.0 2 39 585 622 584 625 0.94 3 4 3.4e-17 9.2e-14 52.7 0.0 1 45 639 684 639 684 0.98 4 4 1e-18 2.8e-15 57.5 0.0 1 43 691 734 691 736 0.96
Sequence Information
- Coding Sequence
- ATGGGTCTTTTGCGCACCGCTGAACAGTTAAAAATCAAAGGTCTTTGCGAGACAGCAGAAAACGCCGATGATCTGAATGATGCGGCCACAGCAACAATAACAGTATCAGAAAATATACAGCAAGCTGTCGTTGGTAATATTGTTAATGCCACAGTAGTGCCGGGTCAGCAATCCCCTCCTATACCCCACCAACAACATCAGccacaacagcagcagcagcaccagcaacaacaacagcagcagcaactaCAACAGCATCAACaccagcaacagcaacaacaaataaCCACTACCGCGGTCTTAAGTCCTGGAAGTGCACAACAGTTAGCCGTTGCCGGACAATTGGTAACATCTACACCTGCCACAACGccccaacaacaacaacagcaacaacaacgaaAATCCAGAGTACGCAAACGTTCAAAGTCCCCCGATTTACAGctgcaacaacagcagcatcATCAACAGACGCAACAGCATCCTCAGgcaatattaatacaaaatcaAAATCAAGCTGCTATTGTCAGTCTACAACAGACATCGGCCGGTAATTATATACCCGTATCAGGAGTTCAAACGGTAACTACGAGTGTAGCGGGTGGCCAACAGCAACAACAGACCACAATTGTAACAGCGGACGACTCGGATTCGGATAAACCTTCGTTACAAAAGATTTGCAAAACTGAAGCAGCTTCAGCTTCACCGGCGTCCACTTCATCGGCATCAGCATCAAATAATGCTGGTGGCGTAACTGCGGTAACAGCTTCGGGAACAGCAATCGTAACACAAATTGTAGTAGCAAGAGACGGAAAAGATAAAAATATGACTAGTTTAGGCATGGGAATGaatGGTGGCATTCTAGGAGTCCCAATGGGCTTTTTAGATTTTGCCCCTGAACCACCGGCACCCTCAGCAACACCTGTCACGGTTACAGAACATGTAGATTTATCCTGTAACCCCAGTACGGATACCAGAGATTTATCAAATCCCTCAGAACCGCTCGATATCGACAATCACTTAGCACAGCACATGATACAACGGCTCGATCAATCTCCCATGCATACCATACACCATCAGACCGGTGACGAATCAAATTCGAATCTGGTCCAACATATAAAAAGTGAAGTTATCGATGCCAAACACCAACAGGCCCAACAGCAACATCAAGCCGCTGCAGCCGCCCATCATCAAGCTCAGCAACAACAGTTGCATGCTCAACAATTAGCAGCAGCGCAAGGACAAACTCATCAGCAACAGCAGGCAGCCCAtcagcagcaacaacagcagcaggCACACCAACAACATCATCAGCAACAGGCCCACCAACAGCATCATCAGGAAATAACCGGAGCCACCGTTATGGAGATTGATCCGAGCCAAATAAAACACGAACCGGGAATGATAATAACACCGGAAATTGTAAATATGATGACGACAGGACATATGGACATGTACAATTCCGATACGAGCGATGATTCAATGATGATTGCCAACGGTTCACCACATGATCAAAATGAACCCCATTACACGAATTTAGATCAACAGCATGGCGATATGAAAGGTCAGTTTAATGGTCCCAAAACTTGGACACAAGATGATATGAATTCAGCTTTAGATGCACTGAAGAATCAAAACATGAGCCTGACGAAAGCATCCGTTACCTATGGCATCCCCTCAACCACCCTCTGGCAAAGGGCCCACCGCATGGGCATCGAAACACCGAAGAAGGAAGGAGGTacaaaatcatggaacgaagaCTCGCTCAACAATGCTCTGGAGGCTTTGCGATCGGGACAAATATCGGCCAATAAAGCATCGAAAGCCTTTGGTATACCTTCGTCGACGTTGTATAAAATAGCACGACGTGAAGGTATACGATTGGCAGCGCCGTTTAATGCCGCACCCACCACCTGGACACCAGAAGATTTGGAAAGGGCCTTGGAAGCAATACGTGCGGGTCATACATCGGTACAGAAGGCAAGTGCAGAATTTGGTATACCCACAGGCACATTATATGGCCGTTGTAAACGTGAGGGCATTGAATTATCCCGTTCAAATCCAACGCCCTGGTCGGAAGATGCTATGAATGAAGCTTTAAATTCTGTGCGAATTGGCCAAATGTCCATCAATCAAGCTGCTATTCATTATAATCTACCGTATAGTTCTCTATATGGTCGCTTTAAACGCGGCAAATATGATGTGGCAAATACAAGCGGTACTTCCATAAATAATACATCAGGAAATACCTCCGGTAGTATTGAAATTATTGAACATAGTCAAGAGAATTCGttgcCTATGTTTCAGCAACAATTCCAATATAGTCCATCGCCGCATCAGCAACACGGCGGTAGTACACCGCAACAAAGTCAAACGCCACAACATCTACAGCAACATGTTGTGCACATACAGCAACATCATCAGCAACAGACCCAACATGCGCAACATATCCAACAGCAAGATGTTGTAACCTCGTCAAGTCAACAACAAGTCCAACAGCAACAACATGCCAGCAATGCGGCAGCCtcccaacaacaacaacagcagcaacaacaacagatTCAACAGATTTACCATCATCACAGTACACCCGAGAGAAGTTGA
- Protein Sequence
- MGLLRTAEQLKIKGLCETAENADDLNDAATATITVSENIQQAVVGNIVNATVVPGQQSPPIPHQQHQPQQQQQHQQQQQQQQLQQHQHQQQQQQITTTAVLSPGSAQQLAVAGQLVTSTPATTPQQQQQQQQRKSRVRKRSKSPDLQLQQQQHHQQTQQHPQAILIQNQNQAAIVSLQQTSAGNYIPVSGVQTVTTSVAGGQQQQQTTIVTADDSDSDKPSLQKICKTEAASASPASTSSASASNNAGGVTAVTASGTAIVTQIVVARDGKDKNMTSLGMGMNGGILGVPMGFLDFAPEPPAPSATPVTVTEHVDLSCNPSTDTRDLSNPSEPLDIDNHLAQHMIQRLDQSPMHTIHHQTGDESNSNLVQHIKSEVIDAKHQQAQQQHQAAAAAHHQAQQQQLHAQQLAAAQGQTHQQQQAAHQQQQQQQAHQQHHQQQAHQQHHQEITGATVMEIDPSQIKHEPGMIITPEIVNMMTTGHMDMYNSDTSDDSMMIANGSPHDQNEPHYTNLDQQHGDMKGQFNGPKTWTQDDMNSALDALKNQNMSLTKASVTYGIPSTTLWQRAHRMGIETPKKEGGTKSWNEDSLNNALEALRSGQISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGHTSVQKASAEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRIGQMSINQAAIHYNLPYSSLYGRFKRGKYDVANTSGTSINNTSGNTSGSIEIIEHSQENSLPMFQQQFQYSPSPHQQHGGSTPQQSQTPQHLQQHVVHIQQHHQQQTQHAQHIQQQDVVTSSSQQQVQQQQHASNAAASQQQQQQQQQQIQQIYHHHSTPERS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00979276;
- 90% Identity
- iTF_00258784;
- 80% Identity
- -