Prud038276.2
Basic Information
- Insect
- Panzeria rudis
- Gene Symbol
- -
- Assembly
- GCA_956483635.1
- Location
- OY101450.1:121729437-121749551[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1e-10 2e-07 32.1 0.0 1 38 533 571 533 576 0.89 2 4 3.2e-13 6.2e-10 40.1 0.0 2 39 588 625 587 628 0.94 3 4 3.8e-17 7.3e-14 52.7 0.0 1 45 642 687 642 687 0.98 4 4 1.2e-18 2.2e-15 57.5 0.0 1 43 694 737 694 739 0.96
Sequence Information
- Coding Sequence
- ATGAATTTGGGTGAAATTTTAACATCTGacGGTCTTTTGCGCACCGCTGAACAGTTAAAAATCAAAGGTCTTTGTGAGACAGCAGAAAATGCCGACGATCTGAATGATACGGCCACAGCAACAATAACAGTATCAGAGAATATACAACAAGCTGTCGTTGGTAATATTGTCAATACCACAGTACTGCCGGGACAGCAATCTCCTCCTATACCCCACCAAcaacatcagcaacaacagcagcaacaacaacagcagcatcaacaccagcaacaacaattaaCCACTACCGCCGTTTTAAGTCCCGGAAGTGCACAACAATTAGCAGTTGCCGGACAATTGGTAACCTCAACACCTGCCACAACACcccagcagcaacaacaacagcagcagcaacaacgaAAGTCCAGAGTACGTAAACGTTCAAAATCCCCCGATATACAGTTGCAACAGCAGCAGCACCACCAACAGCAGCAAAATCAACAGCACCCACAGGcaatattaatacaaaatcaaaatcaaGCTGCTATTGTCAGTCTACAACAGACATCGGCTGGTAACTATATACCAGTATCAGGTGTACAAACGGTAACGACTAGTGTAGCGGGTGGCCAACAGCAACAACATACTACCATTGTAACAGCGGACGATTCGGATTCAGATAAACCCTCGCTACAAAAGATTTGTAAAACTGAAGCGTCTTCAGCTTCACCGGCGTCCACTTCATCGGTATCAGCATCAAATAATGCTGGTGGCGTAACTGCGGTCACAGCATCGGGAACAGCGATCGTAACACAAATTGTAGTAGCAAGAGACGGAAAAGATAAAAATATGACTAGTTTAGGCATGGGAATGaatgGTGGCATTCTAGGAGTCCCTATGGGCTTTCTAGATTTTGCTCCCGAACCACCGGCACCCTCAGCAACACCTGTCACAGTTACAGAACATGTAGATTTATCCTGTCATCCCAGCACGGATACCCGAGATTTATCAAATCCCTCAGAACCGCTCGATATCGACAATCATTTGGCTCAGCACATGATACAACGGCTCGATCAATCTCCCATGCATACCATACATCATCAGACTGGCGACGAATCAAATTCGAATCTGGTTCAGCATATAAAAAGTGAAGTACTTGATgccaaacaacaacaacaacagcagcaacaagcTGCTGCAGTCGCTCATCATCAAGCTCAACAGCAACAGTTGCATGCACAACAATTGGCAGCAGCGCAAGGACAGAcacatcagcaacaacagcaagcAGCCCaccagcaacagcagcagcaacaacagcaggcGCATCAGCATCACCAGCAACAGGCCCACCAGCAGCATCATCAGGAATTAACCGGAGCCACCGTTATGGAGATTGATCCGAGCCAAATAAAACATGAACCGGGCATGATAATAACTCCGGAAATTGTAAATATGATGACGACAGGGCATATGGACATGTACAACTCCGATACGAGCGATGATTCAATGATGATTGCCAACGGTTCACCACATGATCAAAATGAACCCCATTACACAAATTTAGATCAACAGCATGGCGATATGAAAGGTCAGTTTAATGGTCCCAAAACTTGGACACAAGATGATATGAATTCAGCTTTAGATGCATTGAAGAATCAAAACATGAGCCTGACGAAAGCATCCGTTACCTATGGCATCCCCTCAACCACACTCTGGCAAAGGGCCCACCGCATGGGCATCGAAACACCGAAGAAGGAAGGAGGTACGAAATCATGGAACGAAGACTCGCTAAACAATGCACTGGAGGCTTTGCGTTCGGGACAAATATCGGCCAACAAGGCATCGAAAGCCTTTGGTATACCTTCGTCGACGTTGTATAAAATAGCACGACGTGAAGGTATACGATTGGCAGCGCCGTTTAATGCCGCCCCCACCACCTGGACGCCAGAAGATTTGGAAAGGGCTTTGGAAGCAATACGTGCGGGTCATACATCGGTACAGAAGGCAAGTGCAGAATTTGGTATTCCCACAGGCACATTATACGGTCGATGCAAACGTGAGGGCATTGAATTATCCCGCTCGAATCCAACACCTTGGTCTGAAGATGCTATGAATGAAGCTTTAAATTCTGTGCGCATTGGCCAAATGTCTATTAATCAAGCTGCTATCCATTATAATCTACCGTATAGTTCTTTATATGGTCGCTTTAAACGCGGCAAATATGATGTGGCCAATACAAGCGGTACTTCCATAAATAATACATCGGGCAATACCTCCGGTAGTATTGAAATTATTGAACATAGTCAAGAGAATTCGTTGCCTATGTTTCAGCAACAATTCCAATATAGTCCATCGCCGCATCAGCAACAGCACGGCGGCAGTACACCGCAACAAAGTCAAACGCCACAGCATCTACAGCAGCATGTTGTGCATATacaacatcatcagcaacagACCCAACATGCGCAACATATCCAACAGCAAGATGTTGTAACATCGTCAAGTCAACAGCAAGTCCAACAGCAACAGCATGCTAGTAATGCGGCAGCCTcccaacaacagcaaattcAACAAATTTATCATCATCACAGTACACCCGAGAGAAGTTGA
- Protein Sequence
- MNLGEILTSDGLLRTAEQLKIKGLCETAENADDLNDTATATITVSENIQQAVVGNIVNTTVLPGQQSPPIPHQQHQQQQQQQQQQHQHQQQQLTTTAVLSPGSAQQLAVAGQLVTSTPATTPQQQQQQQQQQRKSRVRKRSKSPDIQLQQQQHHQQQQNQQHPQAILIQNQNQAAIVSLQQTSAGNYIPVSGVQTVTTSVAGGQQQQHTTIVTADDSDSDKPSLQKICKTEASSASPASTSSVSASNNAGGVTAVTASGTAIVTQIVVARDGKDKNMTSLGMGMNGGILGVPMGFLDFAPEPPAPSATPVTVTEHVDLSCHPSTDTRDLSNPSEPLDIDNHLAQHMIQRLDQSPMHTIHHQTGDESNSNLVQHIKSEVLDAKQQQQQQQQAAAVAHHQAQQQQLHAQQLAAAQGQTHQQQQQAAHQQQQQQQQQAHQHHQQQAHQQHHQELTGATVMEIDPSQIKHEPGMIITPEIVNMMTTGHMDMYNSDTSDDSMMIANGSPHDQNEPHYTNLDQQHGDMKGQFNGPKTWTQDDMNSALDALKNQNMSLTKASVTYGIPSTTLWQRAHRMGIETPKKEGGTKSWNEDSLNNALEALRSGQISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGHTSVQKASAEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRIGQMSINQAAIHYNLPYSSLYGRFKRGKYDVANTSGTSINNTSGNTSGSIEIIEHSQENSLPMFQQQFQYSPSPHQQQHGGSTPQQSQTPQHLQQHVVHIQHHQQQTQHAQHIQQQDVVTSSSQQQVQQQQHASNAAASQQQQIQQIYHHHSTPERS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00979276;
- 90% Identity
- iTF_00258784;
- 80% Identity
- -