Cvom016454.1
Basic Information
- Insect
- Calliphora vomitoria
- Gene Symbol
- -
- Assembly
- GCA_942486075.2
- Location
- CALNXM020000554.1:372585-390439[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 4.9e-11 8.5e-08 32.0 0.0 1 38 567 605 567 610 0.89 2 4 1.5e-13 2.6e-10 40.0 0.0 2 39 622 659 621 662 0.94 3 4 1.8e-17 3.1e-14 52.6 0.0 1 45 676 721 676 721 0.98 4 4 5.5e-19 9.6e-16 57.4 0.0 1 43 728 771 728 773 0.96
Sequence Information
- Coding Sequence
- ATGCAGTTTCAAAAAGTTTTGCTGCAAATATTTCACAGTGTTTACCGAGGCTATCTTAAAGAATATTTGGCAACTGAAGGTCTTTTACGCACCGCTGAACAGTTAAAAATCAAAGGTCTTTGTGAGACAGCAGAAAATGCCGATGATCTGAATGATACGGCCACAGCAACAATAACAGTATCAGAGAATATACAGCAAGCGGTCGTTGGTAATATTGTCAATGCCACAGTATTGCCGGGTCAGCAGTCTCCTCCTATACCCCACCAACAACATCAGCCACAACAGCAGCAGCAGCAGCAACAACAACAGCAGCATCAACACCAACAGCAGCAGCAGCAACAACAATTAACAACTACCGCCGTATTAAGTCCGGGAAGTGCTCAACAGTTAGCAGCTACAGGACAATTGGTAACATCAACACCTGCCACAACACCCCAGCAACAGCAGCAACAACAACGAAAATCCAGAGTCCGCAAACGTTCAAAATCCCCCGACTTACAGCTGCAACAACAGCAGCACCAGCACCAACAGCAACAGAATCAACAGCAACATCCACAGGCAATATTAATACAAAATCAAAATCAAGCTGCTATTGTCAGTCTACAACAGACGTCGGCCGGTAATTATATACCCGTATCAGGTGTTCAAACGGTAACCACCAGTGTAGCGGGTGGCCAACAGCAGCAGCAGCAACAACAACACACCACCATCGTAACAGCGGACGATTCAGATTCGGATAAGCCGTCACTGCAAAAGATTTGCAAAACTGAAGCGTCCTCAGCTTCACCGGCGTCCACTTCATCGGCATCAGCATCAAATAATGCTGGTGGTGTAACTGCGGTCACAGCATCGGGAACAGCGATCGTAACACAAATTGTAGTAGCAAGAGACGGAAAAGATAAAAATATGACTAGTTTAGGCATGGGAATGAATGGTGGCATTCTAGGAGTCCCTATGGGCTTTTTAGATTTTGCCCCCGAACCACCGGCACCCTCAGCAACACCTGTCACGGTTACAGAACACGTAGATTTATCCTGTAACCCCAGCACGGATACCAGAGATTTATCAAATCCCTCAGAACCGCTCGATATCGACAATCATTTGGCTCAGCACATGATACAACGGCTCGATCAATCTCCCATGCACACCATACATCATCAGACCGGTGACGAATCAAATTCGAATCTAGTTCAGCATATAAAAAGCGAAGTAATCGATGCCAAACAGCAGCAGGCCCAGCAGCAGCAACAACAAGCCGCCGCTGTAGCCGCTCACCATCAAGCTCAGCAGCAACAGTTGCATGCACAACAATTAGCAGCAGCGCAAGGACAAACACATCAGCAACAACAACAGCAGGCAGCCCATCAGCAACAGCAGCAGCAGCAACAACAACAGCAGCAGGCACATCAACAACATCACCAGCAACAGGCCCACCAGCAGCATCATCAGGAAATAACCGGAGCCACCGTTATGGAGATTGATCCGAGCCAAATAAAACATGAGCCGGGCATGATAATAACACCGGAAATTGTAAATATGATGACGACAGGACATATGGACATGTACAATTCCGATACGAGCGATGATTCAATGATGATTGCCAACGGTTCACCACATGATCAAAATGAACCCCATTACACGAATTTAGATCAACAGCATGGCGATATGAAAGGTCAGTTTAATGGTCCCAAAACTTGGACACAAGATGATATGAATTCAGCTTTAGATGCATTGAAGAATCAAAACATGAGCCTGACGAAAGCATCCGTTACCTATGGCATCCCCTCAACCACCCTCTGGCAAAGGGCCCACCGCATGGGCATCGAAACACCGAAGAAGGAAGGAGGTACCAAATCATGGAACGAAGACTCGCTCAACAATGCACTGGAGGCTTTGCGCTCGGGACAAATATCGGCCAACAAAGCATCGAAAGCCTTTGGTATACCTTCGTCGACGTTGTATAAAATAGCACGACGTGAAGGTATACGATTGGCAGCGCCGTTTAATGCCGCCCCAACCACCTGGACGCCGGAAGATTTGGAACGGGCCTTGGAAGCAATACGTGCGGGCCATACATCGGTACAGAAGGCAAGTGCAGAATTTGGTATACCCACAGGCACATTATATGGTCGTTGTAAACGTGAGGGCATCGAATTATCCCGTTCAAATCCTACACCCTGGTCTGAAGATGCTATGAATGAAGCTTTAAATTCAGTGCGCATTGGCCAAATGTCTATAAATCAAGCTGCTATCCATTATAATTTACCGTATAGTTCTTTATATGGTCGCTTTAAGCGCGGCAAATATGATGTGGCCAATACGAGCGGTACTTCCATTAATAATACATCGGGCAATACCTCCGGTAGTATTGAAATCATTGAGCATAGTCAAGAGAATTCGTTGCCTATGTTTCAGCAACAATTCCAATATAGTCCATCGCCGCATCAACAACAACACGGTGGCAGTAGTACACCGCAGCAAAGTCAAACGCCACAGCATCTACAGCAGCATGTTGTGCATATACAGCAACAGCATCATCAGCAACAGCCCCAACATGCGCAACATATCCAACAGCAAGATGTTGTAACCTCGTCAAGTCAACAACAAGTCCAACAGCAACAACATGCCAGCAATACGGCAGCCTCCCAACAACAACAACAGCAGCAGCAGCAACAACAACAACAAATTCAACAGATTTATCATCATCACAGTACACCCGAGAGAAGTTGA
- Protein Sequence
- MQFQKVLLQIFHSVYRGYLKEYLATEGLLRTAEQLKIKGLCETAENADDLNDTATATITVSENIQQAVVGNIVNATVLPGQQSPPIPHQQHQPQQQQQQQQQQQHQHQQQQQQQQLTTTAVLSPGSAQQLAATGQLVTSTPATTPQQQQQQQRKSRVRKRSKSPDLQLQQQQHQHQQQQNQQQHPQAILIQNQNQAAIVSLQQTSAGNYIPVSGVQTVTTSVAGGQQQQQQQQHTTIVTADDSDSDKPSLQKICKTEASSASPASTSSASASNNAGGVTAVTASGTAIVTQIVVARDGKDKNMTSLGMGMNGGILGVPMGFLDFAPEPPAPSATPVTVTEHVDLSCNPSTDTRDLSNPSEPLDIDNHLAQHMIQRLDQSPMHTIHHQTGDESNSNLVQHIKSEVIDAKQQQAQQQQQQAAAVAAHHQAQQQQLHAQQLAAAQGQTHQQQQQQAAHQQQQQQQQQQQQAHQQHHQQQAHQQHHQEITGATVMEIDPSQIKHEPGMIITPEIVNMMTTGHMDMYNSDTSDDSMMIANGSPHDQNEPHYTNLDQQHGDMKGQFNGPKTWTQDDMNSALDALKNQNMSLTKASVTYGIPSTTLWQRAHRMGIETPKKEGGTKSWNEDSLNNALEALRSGQISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGHTSVQKASAEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRIGQMSINQAAIHYNLPYSSLYGRFKRGKYDVANTSGTSINNTSGNTSGSIEIIEHSQENSLPMFQQQFQYSPSPHQQQHGGSSTPQQSQTPQHLQQHVVHIQQQHHQQQPQHAQHIQQQDVVTSSSQQQVQQQQHASNTAASQQQQQQQQQQQQQIQQIYHHHSTPERS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00979276;
- 90% Identity
- iTF_00258784;
- 80% Identity
- -