Basic Information

Insect: Linnaemya vulpina
Gene Symbol: -
Assembly: GCA_963675445.1
Location: OY776279.1:30158365-30168919[-]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 7.2e-11 1.6e-07 32.1 0.0 1 38 518 556 518 561 0.89

2 4 2.2e-13 5.1e-10 40.1 0.0 2 39 573 610 572 613 0.94

3 4 2.6e-17 6e-14 52.7 0.0 1 45 627 672 627 672 0.98

4 4 8e-19 1.8e-15 57.6 0.0 1 43 679 722 679 724 0.96

#	of	c-Evalue	i-Evalue	score	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	7.2e-11	1.6e-07	32.1	1	38	518	556	518	561	0.89
2	4	2.2e-13	5.1e-10	40.1	2	39	573	610	572	613	0.94
3	4	2.6e-17	6e-14	52.7	1	45	627	672	627	672	0.98
4	4	8e-19	1.8e-15	57.6	1	43	679	722	679	724	0.96

Sequence Information

Coding Sequence: atgtcaAAGAAAAGAAATGATTGGGGTCTATTGCGTACCGCTGAACAGTTAAAAATTAAAGGTCTTTGTGAGACAGCAGAAAATGCCGATGATCTCAACGATACGGCCACAGCAACAATAACAGTATCAGAGAATATACAACAAGCTGTCGTTGGTAATATTGTCAATGCTACAGTAGTGCCGGGACAGCAATCTCCTCCTATACCCCACCAACAACATCAGccgcaacagcagcagcatcaacaccagcaacaacaattaaccACTACCGCCGTTTTAAGTCCCGGAAGTGCTCAGCAGCTAGCAATTGCCGGACAATTGGTAACCTCAACGCCTGCCACAACAccgcaacagcaacagcagcagcaacaacgaaAATCCAGAGTACGGAAACGTTCAAAATCCCCCGATCTGCAGTTGCAACAGCAGCAccatcaacagcaacaaagtCAACAACACCCACAGGCAATACtaattcaaaatcaaaatcaagCTGCTATTGTCAGTCTACAACAGACATCGGCTGGCAACTATATACCAGTATCAGGTGTGCAAACGGTAACTACTAGTGTAGCGGGtggacagcaacaacaaaccaCTATTGTAACAGCGGACGATTCGGATTCAGATAAACCCTCCCTACAAAAGATTTGCAAAACTGAAGCATCTTCAGGATCACCGGCGTCCACTTCATCGATATCAGCATCAAATAATGCTGGTGGCGTAACTGCTGTCACAGCATCGGGTACAGCGATCGTAACACAAATTGTAGTAGCAAGAGAcggaaaagataaaaatatgaCTAGTTTAGGCATGGGAATGaatGGTGGCATTCTAGGAGTCCCTATGGGCTTTTTAGATTTTGCCCCCGAACCACCGGCACCCTCAGCAACACCTGTCACAGTTACAGAACATGTTGATTTATCATGTCACCCCAGCTCGGATACTCGGGATTTATCAAATCCTTCAGAACCGCTCGATATCGACAATCATTTGGCTCAGCACATGATACAGCGGCTCGATCAATCTCCCATGCATACCATACATCATCAGACTGGCGACGAATCAAATTCGAATCTGGTTCAACATATAAAGAGTGAAGTACTTGATgccaaacaacagcaacaagccCAACAGCAGCATCAGCAAGCTGCAGCCGCTCATCATCAAGCTCAACAACAACAGTTGCATGCCCAGCAATTGGCAGCGGCGCAAGGACAGAcacatcagcaacaacagcaagcaGCCCACCAGCAGCAGGcacatcatcatcagcaacagGCCCACCAGCAGCATCATCAAGAGATTACCGGTGCCACCGTTATGGAGATTGATCCGAGCCAAATAAAACATGAACCGGGCATGATAATAACACCGGAAATTGTAAATATGATGACGACAGGGCATATGGACATGTACAACTCCGATACGAGCGATGATTCAATGATGATTGCCAACGGTTCACCACATGATCAAAATGAACCCCATTACACAAATTTAGATCAACAGCATGGCGATATGAAAGGTCAGTTTAATGGTCCCAAAACTTGGACACAAGATGATATGAATTCAGCTTTAGATGCATTGAAGAATCAAAACATGAGCCTGACGAAAGCATCCGTTACCTATGGCATCCCCTCAACCACACTCTGGCAAAGGGCCCACCGCATGGGCATCGAAACACCGAAGAAGGAAGGAGGTACGAAATCTTGGAATGAGGACTCGCTAAACAATGCTCTGGAAGCTTTGCGTTCGGGACAAATATCGGCCAACAAAGCATCAAAAGCCTTTGGTATACCTTCGTCGACGTTGTATAAAATAGCACGACGTGAAGGTATACGATTGGCGGCGCCGTTCAATGCCGCTCCCACCACTTGGACACCAGAAGATTTGGAAAGGGCATTGGAAGCAATACGTGCGGGTCATACATCGGTACAGAAGGCAAGTGCAGAATTTGGTATTCCCACAGGCACATTATACGGCCGTTGTAAACGTGAGGGCATTGAACTATCCCGCTCGAATCCAACACCTTGGTCTGAGGATGCCATGAATGAAGCTTTAAATTCTGTGCGcaTTGGCCAAATGTCTATTAATCAAGCTGCTATCCATTACAATCTACCGTATAGTTCTTTATATGGTCGCTTTAAACGGGGCAAATATGATGTGGCCAACACAAGTGGTACTTCCATAAATAATACATCGGGCAATACTTCCGGTAGTATTGAAATCATAGAACATAGTCAAGAGAATTCGTTGCCTATGTTTCAGCAACAATTCCAATATAGTCCATCGCCGCATCAGCAACAGCACGGTGGCAGTAGTACACCGCAACAAAGTCAAACGCCACAGCATCTACAACAACATGTTGTGCACATACAGCATCATCAGCAACAGACCCAACATGCGCAACATATCCAACAGCAAGATGTTGTAACATCGTCCAGTCAACAGCAAgtccaacagcaacaacatgccAGCAATTCGGCAGCctcccaacaacaacaaattcaacaaatttATCATCATCACAGTACACCCGAGAGAAGTTGA
Protein Sequence: MSKKRNDWGLLRTAEQLKIKGLCETAENADDLNDTATATITVSENIQQAVVGNIVNATVVPGQQSPPIPHQQHQPQQQQHQHQQQQLTTTAVLSPGSAQQLAIAGQLVTSTPATTPQQQQQQQQRKSRVRKRSKSPDLQLQQQHHQQQQSQQHPQAILIQNQNQAAIVSLQQTSAGNYIPVSGVQTVTTSVAGGQQQQTTIVTADDSDSDKPSLQKICKTEASSGSPASTSSISASNNAGGVTAVTASGTAIVTQIVVARDGKDKNMTSLGMGMNGGILGVPMGFLDFAPEPPAPSATPVTVTEHVDLSCHPSSDTRDLSNPSEPLDIDNHLAQHMIQRLDQSPMHTIHHQTGDESNSNLVQHIKSEVLDAKQQQQAQQQHQQAAAAHHQAQQQQLHAQQLAAAQGQTHQQQQQAAHQQQAHHHQQQAHQQHHQEITGATVMEIDPSQIKHEPGMIITPEIVNMMTTGHMDMYNSDTSDDSMMIANGSPHDQNEPHYTNLDQQHGDMKGQFNGPKTWTQDDMNSALDALKNQNMSLTKASVTYGIPSTTLWQRAHRMGIETPKKEGGTKSWNEDSLNNALEALRSGQISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGHTSVQKASAEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRIGQMSINQAAIHYNLPYSSLYGRFKRGKYDVANTSGTSINNTSGNTSGSIEIIEHSQENSLPMFQQQFQYSPSPHQQQHGGSSTPQQSQTPQHLQQHVVHIQHHQQQTQHAQHIQQQDVVTSSSQQQVQQQQHASNSAASQQQQIQQIYHHHSTPERS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00979276;
90% Identity: iTF_00258784;
80% Identity: -