Pazu011009.1
Basic Information
- Insect
- Protocalliphora azurea
- Gene Symbol
- -
- Assembly
- GCA_932273785.1
- Location
- CAKNZW010000309.1:1506766-1519897[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 4.3e-11 8.3e-08 32.1 0.0 1 38 536 574 536 579 0.89 2 4 1.3e-13 2.6e-10 40.1 0.0 2 39 591 628 590 631 0.94 3 4 1.6e-17 3.1e-14 52.7 0.0 1 45 645 690 645 690 0.98 4 4 4.4e-19 8.6e-16 57.6 0.0 1 43 697 740 697 742 0.96
Sequence Information
- Coding Sequence
- ATGTTGGCAACTGGTCTTTTGCGCACCGCTGAACAGTTAAAAATCAAAGGTCTTTGTGAGACTGCAGAAAATGCCGATGATCTGAATGATACAGCCACAGCAACAATAACAGTTTCAGAGAATATACAACAAGCTGTCGTTGGTAATATTGTCAATGCCACAGTGGTGCCGGGTCAGCAATCTCCCCCAATACCCCACCAACAACATCAGCCACTACAACAGCAGCAGCAGCAACACCACCAACAGCATCAACATCAGCAACAACAACAAATTACCACAACAGCTGTGTTAAGTCCGGGTAGCGCTCAACAATTTGCCGCTGCTGGACAATTGGTAACATCAACACCTGCCTCAACACCTCAGCAACAACAACAGCAGCAACAACGAAAATCCAGAGTACGTAAACGTTCAAAATCGCCTGATATACAGCAGCTGCAACAACAGCAACAGAATCAACAACATCCCCAGGCAATATTAATACAAAATCAAAACCAAGCAGCTATTGTTAGTCTACAACAAACGTCGGCTGGTAATTATATACCCGTGTCGGGAGTTCAGACAGTAACCACCAGTGTAGCTGCGGGTGGCCAACAGCAGCAACAACAACAGACCACCATTGTAACGGCAGAAGATTCGGATTCGGATAAACCGTCACTGCAAAAAATTTGCAAAACTGAGGCATCCTCAGCTTCACCGGCGTCCACTTCATCGGCATCAGCATCAAATAATGCTGGTGGCGTAACTGCGGTCACAGCATCGGGTACAGCGATCGTAACACAAATTGTAGTAGCAAGAGACGGAAAAGATAATAAAAATATGACTAGTTTAGGCATGGGAATGAATGGTGGCATTCTAGGAGTCCCTATGGGCTTTTTAGATTTTGCCCCTGAACCACCGGCACCTTCAGCAACACCTGTCACCGTTACAGAACACGTAGATTTATCCTGTAACCCCAGTACGGATACCAGAGATTTATCAAATCCCTCAGAACCGCTCGATATCGACAATCATTTGGCTCAGCATATGATACAACGGCTTGATCAATCTCCAATGCATACCATACATCATCAGACCGGTGACGAATCAAATTCGAATCTGGTGCAGCATATAAAAAGCGAAGTTATCGATGCCAaacaacagcaacaacaggtccagcaacagcaacaacaacaagctgctgcagccgcccatcatcaagctcaacaacaacagttgcatgcacaacaattagcagcagcgcaaggacaaacacatcaacagcagcaacaacaggcagcccatcaacagcagcaacaacaacaacaacagcaggcacatcaacaacatcatcagcaacaagcccaccagcagcatcatgagataagcggagccacaGTTATGGAGATTGATCCAAGCCAAATAAAACATGAGCCGGGCATGATAATAACACCGGAAATTGTAAATATGATGACGACAGGACATATGGACATGTACAATTCCGATACGAGCGATGATTCAATGATGATTGCAAACGGTTCACCACATGATCAAAATGAACCCCATTACACAAATTTAGATCAGCAGCATGGCGATATGAAAGGTCAGTTTAATGGTCCCAAAACTTGGACACAAGATGATATGAATTCAGCTTTAGATGCACTGAAGAATCAAAACATGAGCCTGACGAAAGCATCCGTTACCTATGGCATCCCCTCAACCACCCTCTGGCAAAGGGCCCACCGCATGGGCATCGAAACACCCAAGAAGGAAGGAGGTACCAAATCATGGAACGAAGACTCACTTAACAATGCTCTGGAGGCTTTGCGTTCGGGACAAATATCGGCTAATAAAGCATCAAAAGCCTTTGGTATACCTTCGTCGACGTTGTATAAAATAGCACGACGTGAAGGTATACGATTGGCAGCGCCGTTTAATGCCGCCCCAACCACCTGGACGCCGGAAGATTTGGAACGAGCCTTGGAGGCAATACGTGCGGGTCATACATCGGTACAGAAGGCAAGTGCTGAATTTGGTATACCCACAGGCACTTTATATGGTCGTTGTAAACGTGAGGGCATTGAATTATCCCGTTCAAATCCTACCCCATGGTCAGAAGATGCTATGAATGAAGCTCTAAATTCTGTGCGCATCGGTCAAATGTCGATAAATCAGGCTGCTATCCATTATAATTTACCTTATAGTTCTTTATATGGTCGCTTTAAACGTGGCAAATATGATGTTACCAACACGAGCGGTACTTCCATTAATAATACATCGGGCAATACCTCTGGTAGTATTGAAATTATTGAACATAGTCAAGAGAATTCGTTGCCTATGTTTCAGCAACAATTCCAATATAGTCCATCACCGCATCAGCAACAGCACGGTGGTAGTACACCGCAACAGAGCCAAACGCCACAGCATCTACAACAACATGTTGTGCACATACAGCAACAACATCATCAGCAACAGAGCCAACATGCGCAACATATCCAACAGCAGGATGTTGTAACCTCGTCAAGCCAACAACAGCAAGTCCAACAGCAGCAACATGTCAGCAATTCGGCAGCCTCCCAACAACAACAGCAGCAGCAACAAATTCAACAAATCTATCATCATCACAGTACACCTGAGAGAAGTTGA
- Protein Sequence
- MLATGLLRTAEQLKIKGLCETAENADDLNDTATATITVSENIQQAVVGNIVNATVVPGQQSPPIPHQQHQPLQQQQQQHHQQHQHQQQQQITTTAVLSPGSAQQFAAAGQLVTSTPASTPQQQQQQQQRKSRVRKRSKSPDIQQLQQQQQNQQHPQAILIQNQNQAAIVSLQQTSAGNYIPVSGVQTVTTSVAAGGQQQQQQQTTIVTAEDSDSDKPSLQKICKTEASSASPASTSSASASNNAGGVTAVTASGTAIVTQIVVARDGKDNKNMTSLGMGMNGGILGVPMGFLDFAPEPPAPSATPVTVTEHVDLSCNPSTDTRDLSNPSEPLDIDNHLAQHMIQRLDQSPMHTIHHQTGDESNSNLVQHIKSEVIDAKQQQQQVQQQQQQQAAAAAHHQAQQQQLHAQQLAAAQGQTHQQQQQQAAHQQQQQQQQQQAHQQHHQQQAHQQHHEISGATVMEIDPSQIKHEPGMIITPEIVNMMTTGHMDMYNSDTSDDSMMIANGSPHDQNEPHYTNLDQQHGDMKGQFNGPKTWTQDDMNSALDALKNQNMSLTKASVTYGIPSTTLWQRAHRMGIETPKKEGGTKSWNEDSLNNALEALRSGQISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGHTSVQKASAEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRIGQMSINQAAIHYNLPYSSLYGRFKRGKYDVTNTSGTSINNTSGNTSGSIEIIEHSQENSLPMFQQQFQYSPSPHQQQHGGSTPQQSQTPQHLQQHVVHIQQQHHQQQSQHAQHIQQQDVVTSSSQQQQVQQQQHVSNSAASQQQQQQQQIQQIYHHHSTPERS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00979276;
- 90% Identity
- iTF_00258784;
- 80% Identity
- -