Scar028479.2
Basic Information
- Insect
- Sarcophaga carnaria
- Gene Symbol
- -
- Assembly
- GCA_958299815.1
- Location
- OY283153.1:33875253-33889085[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 5.5e-11 1.5e-07 32.0 0.0 1 38 547 585 547 590 0.89 2 4 1.7e-13 4.6e-10 40.1 0.0 2 39 602 639 601 642 0.94 3 4 2e-17 5.5e-14 52.6 0.0 1 45 656 701 656 701 0.98 4 4 6.2e-19 1.7e-15 57.5 0.0 1 43 708 751 708 753 0.96
Sequence Information
- Coding Sequence
- atggcCAACACGACAACTACTTCATCATCTTCGTGTGTCTATTTGTATGGTCTATTGCGTACCGCTGAACAGTTAAAGATTAAAGGTCTGTGCGAGACAGCAGAGAACGCCGACGATCTGAATGATACGGCCACAGCTACAATAACAGTATCCGAAAATATACAGCAAGCAGTCGTTGGTAATATTGTGAATGCAACAGTAGTGCCGGGACAACAATCACCTCCAATACCCCACCAACAGCATCAGACGCCACAGCAGCATCAACAGCAATTAACAAATACCGCCGTCTTAAGTCCGAGTAGTGCTCAACAGTTAGCCGCTGCTGGACAATTGGTCACATCCACACCTGCCACAACGccccaacaacaacagcagcagcaacaacagcagctggGCCGTAAATCGCGGGTACGTAAACGTTCGAAATCACCCGATTTacaattgcaacaacagcaacagcagcatcatcaacagcaacaacaacatccgcAGGCAATActaatacaaaatcaaaatcaagcTGCCATTGTAAGTTTGCAACAGACATCAGCCGGTAATTATATACCCGTGTCGGGCGTGCAAACGGTAACCACGAGTATAGCGGGCGGtcaacagcaacagcaccaGCAACAGACCACCATTGTTACGGCAGACGATTCGGATTCGGATAAGCCGTTGACGAAAATCTGTAAAACTGAAGCATCGTCAGCTTCACCGGCGTCTACATCATCGGCATCGGCCTCAAATAATGCTGGTGGCGTAACTGCGGTCACAGCTTCGGGTACAGCGATCGTAACACAAATTGTAGTAGCAAGAGACggaaaagataaaaatatgACTAGTTTAGGCATGGGAATGAATGGCGGCATACTTGGAGTCCCTATGGGATTTTTAGATTTCGCTCCTGAACCACCGGCACCATCAGCAACACCAGTTACGGTTACAGAACACGTTGATCTATCCTGTAACCCCAGCACGGATACACGAGATTTATCAAATCCCTCAGAACCGCTCGATATCGACAATCACTTGGCTCAGCATATGATACAACGGCTCGATCAATCTCCAATGCATTCGATACATCATCAAACCGGTGACGAATCAAATTCGAATCTGGTTCAACACATAAAAAGCGAAGTTATTGACGCCAAACAGCAGgcccaacaacagcagcaacaacagcaagcaGCTGCAGCGGCACATCATCAAgcccaacagcagcagcaacagttgCATGCTCAGCAGTTGGCAGCAGCGCAAGGACAAGCacatcagcaacagcagcaacaacaacaacaggccgcccatcaacaacaacaacagcaggctgcacatcagcagcaacaacaacagcaccacCAACAGCAGGCCCACCAGCAACATCATCAGGAAATAACAGGAGCCACCGTAATGGAGATTGATCCGAGCCAAATAAAACATGAGCCGGGCATGATAATAACACCGGAAATTGTAAATATGATGACGACAGGGCATATGGAGATGTACAATTCCGATACGAGCGATGATTCAATGATGATTGCCAATGGTTCACCCCATGATCAAAATGAACCCCATTATACGAATTTAGATCAACAGCATGGCGATATGAAAGGTCAGTTTAATGGTCCCAAAACTTGGACACAAGATGATATGAATTCAGCTTTAGATGCACTGAAGAATCAAAACATGAGCCTGACGAAAGCATCCGTTACCTATGGCATCCCCTCAACAACCCTATGGCAAAGGGCCCATCGCATGGGCATCGAAACACCGAAGAAGGAAGGAGGTACCAAATCATGGAACGAAGACTCACTCAACAATGCATTGGAGGCGTTACGTTCGGGACAAATATCGGCTAATAAAGCATCGAAAGCCTTTGGTATACCTTCGTCGACGTTGTATAAAATAGCACGACGTGAAGGTATACGATTGGCAGCGCCGTTTAATGCCGCCCCCACCACCTGGACACCAGAAGATCTGGAGCGAGCCTTAGAGGCCATACGAGCTGGTCACACATCCGTACAGAAGGCAAGTGCTGAATTTGGTATACCAACAGGCACATTATATGGTCGCTGTAAACGTGAAGGTATTGAATTGTCACGTTCAAATCCCACACCCTGGTCGGAAGATGCTATGAATGAAGCTTTAAATTCTGTGCGCATTGGCCAAATGTCTATCAATCAGGCGGCTATACACTATAATCTACCCTATAGCTCCTTATATGGCCGCTTTAAACGGGGCAAATACGATGTGGCCAACACAAGTGGTACTTCCATTAATAATACGTCGGGAAATACGTCCGGTAGTATTGAAATTATTGAACATAGTCAAGAGAATTCGTTGCCTATGTTTCAGCAACAATTCCAATATAGTCCATCGCCGCATCAGCAACAGCACGGCGGCAGTAGTACACCACAGCAAAGTCAAACGCCACAGCATCTACAACAGCATGTGGTGCATAttcaacagcaacatcatcaaCAGTCGCAACATGCGCAACATATCCAACAGCAGGATGTTGTAACCTCATCGAGTCAACAGCAAGTACAGCAACATGCCAGCAATTCGGCAGCctcccaacaacaacagcaacaacaacaaattcaacaaatttatcATCATCACAACACACCTGAGAGAAGTTGA
- Protein Sequence
- MANTTTTSSSSCVYLYGLLRTAEQLKIKGLCETAENADDLNDTATATITVSENIQQAVVGNIVNATVVPGQQSPPIPHQQHQTPQQHQQQLTNTAVLSPSSAQQLAAAGQLVTSTPATTPQQQQQQQQQQLGRKSRVRKRSKSPDLQLQQQQQQHHQQQQQHPQAILIQNQNQAAIVSLQQTSAGNYIPVSGVQTVTTSIAGGQQQQHQQQTTIVTADDSDSDKPLTKICKTEASSASPASTSSASASNNAGGVTAVTASGTAIVTQIVVARDGKDKNMTSLGMGMNGGILGVPMGFLDFAPEPPAPSATPVTVTEHVDLSCNPSTDTRDLSNPSEPLDIDNHLAQHMIQRLDQSPMHSIHHQTGDESNSNLVQHIKSEVIDAKQQAQQQQQQQQAAAAAHHQAQQQQQQLHAQQLAAAQGQAHQQQQQQQQQAAHQQQQQQAAHQQQQQQHHQQQAHQQHHQEITGATVMEIDPSQIKHEPGMIITPEIVNMMTTGHMEMYNSDTSDDSMMIANGSPHDQNEPHYTNLDQQHGDMKGQFNGPKTWTQDDMNSALDALKNQNMSLTKASVTYGIPSTTLWQRAHRMGIETPKKEGGTKSWNEDSLNNALEALRSGQISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGHTSVQKASAEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRIGQMSINQAAIHYNLPYSSLYGRFKRGKYDVANTSGTSINNTSGNTSGSIEIIEHSQENSLPMFQQQFQYSPSPHQQQHGGSSTPQQSQTPQHLQQHVVHIQQQHHQQSQHAQHIQQQDVVTSSSQQQVQQHASNSAASQQQQQQQQIQQIYHHHNTPERS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00979276;
- 90% Identity
- iTF_00258784;
- 80% Identity
- -