Slun018539.1
Basic Information
- Insect
- Stomorhina lunata
- Gene Symbol
- -
- Assembly
- GCA_933228635.1
- Location
- CAKOFY010003594.1:26540-35861[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 8.5e-11 1e-07 32.1 0.0 1 38 542 580 542 585 0.89 2 4 2.6e-13 3.1e-10 40.1 0.0 2 39 597 634 596 637 0.94 3 4 3.1e-17 3.7e-14 52.7 0.0 1 45 651 696 651 696 0.98 4 4 9.6e-19 1.1e-15 57.5 0.0 1 43 703 746 703 748 0.96
Sequence Information
- Coding Sequence
- ATGAATAGGGGGGGGGGAATAGTATTTTGGATGGGTCTTTTACGCACCGCCGAACAGTTAAAAATCAAAGGTCTTTGTGAGACAGCAGAGAATGCCGATGATCTGAGCGATACAGCCACAGCAACAATAACAGTATCCGAGAATATACAGCAAGCTGTAGTGGGTAATATTGTTAATGCTACAGTAGTTCCAGGTCCACAatcccctcctataccccaccaacatcatcaggcccaacagcaacaacagccacaacagcagacgcaacagcagcagcaacaacagcatcaacagcaccagcaacagcagcagcaacaacaacagcagcaattaaccacaaccgccgtattaagtccgggcagtgctcaacaattagcagccgctggacaattgattacatccacacctgccacaacaccccaacaacaacagcagcaacaacgaaagtcacgtgttcgcaaacgttcaaaatcaccggacctacagttgcaacaacagcaacatcaacaggcaattttaatacaaaatcaaaatcaagcggcaattgttagcctacaacaaacatcggccggtaattatatacccgtatcaggagtacaaacagtaaccaccagtatagcaggcggccaacaacaacagcagcagcaacagaccaccatagtaacagcagACGATTCAGATTCGGATAAACCTTCGCTACAAAAGATTTGTAAAACAGAAGCATCTGCAGCTTCGCCAGCGTCCACTTCTTCGGCCTCAGCTTCAAATAATGCTGGTGGCGTAACTGCGGTCACAGCATCGGGTACAGCTATCGTAACACAAATTGTAGTAGCAAGAGACGGCAAAGATAAAAATATGACTAGTTTAGGCATGGGAATGAATGGTGGCATGTTGGGTGTTCCGATGAGCTTTTTAGAATTTGCTCCTGAACCACCGGCACCATCAGCCACTCCAGTTACGGTTGCAGAACATGTAGATTTATCCTGTAATCCCAGCACGGACACCAGAGATTTATCAAATCCCTCAGAACCGCTCGATATCGATAATCACTTGGCTCAGCACATGATACAAAGGCTCGATCAATCTCCTATGCACAGCATTCACCATCAGACCGGAGACGAATCAAATTCAAATCTGGTCCAGCATATAAAAAGTGAAGTTATTGATGCCAaacaacagcaacaagtgcagcagcaacaggcggcggcagctgctcatcatcaagctcaacaacaacaattacatgcccaacaattagcagcagcgcaaggacaaacacatcagcaacagcaggttgcccatcagcagcaacaacagcagcaggcacatcaacagcatcaccagcagcaacaggcccaccaacaacatcatcaggaaATAACTGGTGCCACCGTCATGGAGATTGATCCGAGCCAAATAAAACATGAACCGGGCATGATAATTACACCGGAAATTGTAAATATGATGACGACAGGACATATGGACATGTACAACTCCGATACGAGCGATGATTCAATGATGATTGCCAATGGTTCACCACATGATCAAAATGAACCCCACTACACGAATCTAGATCAACAGCATGGCGATATGAAAGGTCAGTTTAATGGTCCCAAAACTTGGACACAAGATGATATGAATTCAGCTTTAGATGCATTGAAGAATCAAAACATGAGCCTGACGAAAGCATCCGTTACCTATGGCATCCCCTCAACCACCCTCTGGCAAAGGGCCCACCGCATGGGCATCGAAACACCCAAGAAGGAAGGAGGTACCAAATCATGGAACGAAGACTCACTCAACAATGCCCTGGAAGCTTTGCGTTCGGGACAAATATCGGCTAATAAAGCCTCAAAAGCCTTTGGTATACCTTCGTCGACGTTGTATAAGATAGCTCGACGTGAAGGTATACGATTGGCAGCGCCGTTTAATGCCGCCCCCACAACCTGGACGCCGGAAGATTTGGAAAGGGCCTTGGAGGCAATAAGGGCTGGGCATACATCGGTACAGAAGGCAAGTGCAGAATTTGGTATACCCACAGGCACTTTATACGGTCGTTGTAAACGCGAAGGCATCGAGTTATCCCGTTCAAATCCCACACCCTGGTCGGAAGATGCTATGAATGAAGCTTTAAATTCAGTGCGCATTGGCCAAATGTCCATCAATCAAGCGGCTATTCATTATAATTTGCCCTATAGTTCGTTATATGGTCGCTTTAAGCGCGGCAAATACGATGTGGCCAATACGAGCGGTACTTCCATTAATAATACATCGGGCAATACCTCTGGTAGTATTGAAATTATTGAACATAGTCAAGAGAATTCGTTGCCTATGTTTCAGCAACAATTCCAATATAGtccatcgccgcatcagcaacagcacggtggcagtagtacaccgcaacaaagtcaaacgccacagcatctacagcaacatttggtgcatatacaacagcagcagcaacatcagcagcatagccagcatgcacagcatatccaacagcaagatgttgtaacctcatcaagtcaacaacaacaacaacaacaacaacagcagcagcaacaacaaattcaacagatctatcatcatcacagtacacccgagagaagttga
- Protein Sequence
- MNRGGGIVFWMGLLRTAEQLKIKGLCETAENADDLSDTATATITVSENIQQAVVGNIVNATVVPGPQSPPIPHQHHQAQQQQQPQQQTQQQQQQQHQQHQQQQQQQQQQQLTTTAVLSPGSAQQLAAAGQLITSTPATTPQQQQQQQRKSRVRKRSKSPDLQLQQQQHQQAILIQNQNQAAIVSLQQTSAGNYIPVSGVQTVTTSIAGGQQQQQQQQTTIVTADDSDSDKPSLQKICKTEASAASPASTSSASASNNAGGVTAVTASGTAIVTQIVVARDGKDKNMTSLGMGMNGGMLGVPMSFLEFAPEPPAPSATPVTVAEHVDLSCNPSTDTRDLSNPSEPLDIDNHLAQHMIQRLDQSPMHSIHHQTGDESNSNLVQHIKSEVIDAKQQQQVQQQQAAAAAHHQAQQQQLHAQQLAAAQGQTHQQQQVAHQQQQQQQAHQQHHQQQQAHQQHHQEITGATVMEIDPSQIKHEPGMIITPEIVNMMTTGHMDMYNSDTSDDSMMIANGSPHDQNEPHYTNLDQQHGDMKGQFNGPKTWTQDDMNSALDALKNQNMSLTKASVTYGIPSTTLWQRAHRMGIETPKKEGGTKSWNEDSLNNALEALRSGQISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGHTSVQKASAEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRIGQMSINQAAIHYNLPYSSLYGRFKRGKYDVANTSGTSINNTSGNTSGSIEIIEHSQENSLPMFQQQFQYSPSPHQQQHGGSSTPQQSQTPQHLQQHLVHIQQQQQHQQHSQHAQHIQQQDVVTSSSQQQQQQQQQQQQQQIQQIYHHHSTPERS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00979276;
- 90% Identity
- iTF_00258784;
- 80% Identity
- -