Gvir028913.2
Basic Information
- Insect
- Gymnocheta viridis
- Gene Symbol
- -
- Assembly
- GCA_956483585.1
- Location
- OY101443.1:50579527-50611614[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 7.3e-11 1.7e-07 32.0 0.0 1 38 574 612 574 617 0.89 2 4 2.3e-13 5.3e-10 40.0 0.0 2 39 629 666 628 669 0.94 3 4 2.7e-17 6.2e-14 52.6 0.0 1 45 683 728 683 728 0.98 4 4 8.2e-19 1.9e-15 57.5 0.0 1 43 735 778 735 780 0.96
Sequence Information
- Coding Sequence
- ATGTTTCATGACTTACCTCGTTACATCAAAGACCCACAAAAGACTGCTGGAACTGTTAAATCTGGTGGTCTTGCCGTCCAGTGCAAATCGTCAAAAAGGGAAATAAAACGACCTGGAAATGCTTCCTTGAGAATTTCGGTTGTGGTTCGTGCTGGTCTTTTGCGCACCGCTGAACAGTTAAAAATCAAAGGTCTTTGTGAGACAGCAGAAAATGCCGATGATCTGAATGATACGGCCACAGCAACAATAACAGTATCAGAGAATATACAACAAGCTGTCGTTGGTAATATTGTCAATGCCACAGTAGTGCCGGGACAGCAATCTCCTCCTATACCCCACCAACAACATCAGccacaacagcagcagcaacagcagcatcagcaccagcaacaacaattaacCACTACCGCCGTTTTAAGTCCCGGAAGTGCTCAACAATTAGCAGCTGCCGGACAACTGGTAACCTCAACACCTGCCACAACACCCCAactgcaacaacagcagcaacaacgaAAATCCAGAGTACGTAAACGTTCAAAATCCCCCGACCTACAgttgcaacagcagcaacaccatcagcaacaacaaaatcaacagcACCCACAGgcaatattaatacaaaatcaaaatcaagCCGCTATTGTCAGTCTACAACAGACATCGGCTGGTAATTATATACCCGTATCAGGTGTACAAACGGTAACCACCAGTGTAGCGGGTGGCCATCAGCAACAACAGACCACCATTGTAACAGCGGACGATTCGGATTCGGATAAACCTTCGCTGCAAAAGATTTGCAAAACTGAAGCGTCTTCAGCTTCACCGGCGTCCTCTTCATCGGTATCAGCATCAAATAATGCTGGTGGCGTAACTGCGGTCACAGCATCGGGAACAGCGATCGTAACACAAATTGTAGTAGCAAGAGACGGCAAAGATAAAAATATGACTAGTTTAGGCATGGGAATGaatgGTGGCATTCTAGGAGTCCCTATGGGCTTCTTAGATTTTGCCCCCGAACCACCGGCACCCTCCGCAACACCTGTTACAGTTACAGAACATGTCGATTTATCCTGTCACCCCAGTACGGATACCCGAGATTTATCAAatCCCTCAGAACCGCTCGATATTGACAATCATTTGGCTCAACACATGATACAACGGCTCGATCAATCTCCCATGCATACCATACATCATCAGACAGGCGATGAATCAAATTCGAATCTGGTTCAGCATATAAAAAGCGAAGTTATTGATGccaaacaacagcaacaggcccaacagcagcagcaacaagcCGCTGCAGTAGCTCACCATCAAGCTCAGCAGCAACAGTTGCATGCACAACAATTAGCAGCGCAGGGACAAACAcatcagcaacaacagcagGCGGCCcaccagcaacagcagcagcaacaacaacagcaggcACATCAACATCACCAGCAACAGGCCCATCAGCAGCATCATCAAGAGATTACGGGAGCCACCGTCATGGAGATTGATCCGAGCCAAATAAAACATGAACCGGGCATGATAATAACACCGGAAATTGTAAATATGATGACGACAGGGCATATGGACATGTACAACTCCGATACGAGCGATGATTCAATGATGATTGCCAACGGTTCACCACATGATCAAAATGAACCCCATTACACAAATTTAGATCAACAGCATGGCGATATGAAAGGTCAGTTTAATGGTCCCAAAACTTGGACACAAGATGATATGAATTCAGCTTTAGATGCATTGAAGAATCAAAACATGAGCCTGACGAAAGCATCCGTTACCTATGGCATCCCCTCAACCACACTATGGCAAAGGGCCCACCGCATGGGCATCGAAACACCGAAGAAGGAAGGAGGTACGAAATCATGGAACGAGGACTCGCTAAACAATGCACTGGAGGCTTTGCGTTCGGGACAAATATCGGCCAACAAGGCATCAAAAGCCTTTGGTATACCTTCGTCGACGTTGTATAAGATAGCACGACGTGAAGGTATACGATTGGCAGCGCCGTTCAATGCCGCCCCCACCACCTGGACACCAGAAGACTTGGAAAGGGCTTTGGAAGCAATACGAGCGGGTCATACATCCGTACAGAAGGCAAGTGCAGAATTTGGTATTCCCACAGGAACATTATACGGCCGTTGTAAACGTGAGGGCATTGAATTATCCCGCTCGAATCCAACACCCTGGTCTGAAGATGCTATGAACGAAGCTTTAAATTCTGTGCGaATTGGCCAAATGTCTATTAATCAAGCTGCTATCCATTATAATCTACCGTATAGTTCTTTATATGGTCGCTTTAAACGAGGCAAATATGATGTGGCCAATACAAGCGGTACTTCCATAAATAATACATCGGGCAATACCTCCGGTAGTATTGAAATTATTGAACATAGTCAAGAGAATTCGttGCCTATGTTTCAGCAACAATTCCAATATAGTCCATCGCCGCATCAGCAACAACATGGCGGTAGTAGTACACCGCAACAAAGTCAAACGCCACAGCATCTACAGCAACATGTTGTGCATATACAGCAACATCATCAGCAACAGACCCAACATACGCAACATATCCAACAGCAAGATGTTGTAACATCGTCAAGTCAACAGCAAgtccaacagcaacaacatgtCAGCAATGTGGCAGCCTCCCAACAACagcaaattcaacaaatttatcATCATCACAGTACACCCGAGAGAAGTTGA
- Protein Sequence
- MFHDLPRYIKDPQKTAGTVKSGGLAVQCKSSKREIKRPGNASLRISVVVRAGLLRTAEQLKIKGLCETAENADDLNDTATATITVSENIQQAVVGNIVNATVVPGQQSPPIPHQQHQPQQQQQQQHQHQQQQLTTTAVLSPGSAQQLAAAGQLVTSTPATTPQLQQQQQQRKSRVRKRSKSPDLQLQQQQHHQQQQNQQHPQAILIQNQNQAAIVSLQQTSAGNYIPVSGVQTVTTSVAGGHQQQQTTIVTADDSDSDKPSLQKICKTEASSASPASSSSVSASNNAGGVTAVTASGTAIVTQIVVARDGKDKNMTSLGMGMNGGILGVPMGFLDFAPEPPAPSATPVTVTEHVDLSCHPSTDTRDLSNPSEPLDIDNHLAQHMIQRLDQSPMHTIHHQTGDESNSNLVQHIKSEVIDAKQQQQAQQQQQQAAAVAHHQAQQQQLHAQQLAAQGQTHQQQQQAAHQQQQQQQQQQAHQHHQQQAHQQHHQEITGATVMEIDPSQIKHEPGMIITPEIVNMMTTGHMDMYNSDTSDDSMMIANGSPHDQNEPHYTNLDQQHGDMKGQFNGPKTWTQDDMNSALDALKNQNMSLTKASVTYGIPSTTLWQRAHRMGIETPKKEGGTKSWNEDSLNNALEALRSGQISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGHTSVQKASAEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRIGQMSINQAAIHYNLPYSSLYGRFKRGKYDVANTSGTSINNTSGNTSGSIEIIEHSQENSLPMFQQQFQYSPSPHQQQHGGSSTPQQSQTPQHLQQHVVHIQQHHQQQTQHTQHIQQQDVVTSSSQQQVQQQQHVSNVAASQQQQIQQIYHHHSTPERS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00979276;
- 90% Identity
- iTF_00258784;
- 80% Identity
- -