Lser010130.1
Basic Information
- Insect
- Lucilia sericata
- Gene Symbol
- lolal
- Assembly
- GCA_015586225.1
- Location
- NW:36792-205537[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 4.5e-11 6.5e-08 31.9 0.0 1 38 646 684 646 689 0.89 2 4 1.4e-13 2e-10 39.9 0.0 2 39 701 738 700 741 0.94 3 4 1.7e-17 2.4e-14 52.4 0.0 1 45 755 800 755 800 0.98 4 4 5.1e-19 7.3e-16 57.3 0.0 1 43 807 850 807 852 0.96
Sequence Information
- Coding Sequence
- ATGGCTCAACGAAGTCATCAATATTTTAGTTTGCGATGGAATAACTATCAAAACACCATGACTTCGGTGTTTCAGCAATTGCGTGAAGATTTATCATTTGTTGATGTAACCCTATCATGTGAACATGGTTCTCTTAAGGCCCACAagGTGGTGCTTTCAGCCTGTTCatcatattttcaaaaattattattggaGAATCCCTGCAAACATCCAACCATAATATTGCCAGGCGATATTATATTTACAGATTTAAAAACCATCATTGATTTTGTTTATCGTGGTGAAATTGATGTAACCGAATCAGAACTACAGGGTCTTCTACGCACCGCTGAACAGTTAAAAATTAAAGGTCTTTGTGAGACAGCAGAAAATGCCGATGATCTGAACGATACGGCCacagcaacaataacagtaTCTGAGAATATACAGCAAGCTGTCGTTGGTAATATTGTCAATGCTACAGTAGTACCAGGTCCGCAATCACCACCTATACCCCACCAACAACATCAGCAGCCACAACAGCAAACGtcacagcagcagcagcaacaacagcagcaacagcatcaacaccagcaacaacaattaacCACAACCGCCGTTTTAAGTCCGGGAAGTGCTCAACAGTTAGCCGCCACAGGACAATTGGTAACATCAACACCTGCCACAACAccccagcagcagcaacagcagcagcaacaacaacgaaaatCCCGCGTACGCAAACGTTCAAAATCCCCCGATTTACAattgcaacagcagcaacaacaccatcaacagcaacaaaatcaaCAGCATCCACAGgcaatattaatacaaaatcaaaatCAGGCTGCTATTGTCAGTCTACAACAGACATCGGCTGGTAATTATATACCCGTGTCGGGAGTACAAACGGTAACCACCAGTGTAGCGGGTGGtccacagcagcaacaacaacagaccACCATTGTAACAGCGGACGATTCTGATTCGGATAAACCGTCGCTGCAAAAGATTTGTAAAACTGAAGCATCATCCGCTTCACCGGCGTCCACTTCATCGGCATCGGCATCAAATAATGCTGGTGGCGTAACTGCGGTCACAGCATCGGGCACAGCGATCGTAACACAAATTGTAGTAGCAAGAGACGGAAAAGATAAAAATATGACTAGTTTAGGCATGGGAATGaatGGTGGCATTCTAGGAGTCCCTATGGGCTTTTTAGATTTTGCCCCCGAACCACCGGCACCATCGGCAACACCAGTTACGGTTACAGAACACGTTGATTTATCCTGTAACCCCAGTACGGATACCAGAGATTTATCAAATCCCTCAGAACCGCTCGATATCGACAATCATTTGGCTCAACACATGATACAACGGCTCGATCAATCTCCCATGCACACGATTCACCATCAGACCGGTGAAGAATCAAATTCGAATCTGGTACAGCATATAAAGAGTGAAGTAATCGATGccaaacaacagcagcagcagcaacaacagcagcaacaacaagctGCTGCTGTAGCCGCCGCTCATCATCAAGCTCAACAGCAGCAGTTGCATGCACAACAATTAGCAGCAGCGCAAGGACAAAcacatcagcagcaacaacagcaggcAGCCcaccaacagcagcaacaacagcagcaggcACATCAACAACATCACCAGCAGCAACAGGCCCACCAGCAGCATCATCAGGAAATAACCGGAGCCACCGTTATGGAGATTGATCCGAGCCAAATAAAACATGAGCCGGGCATGATAATAACACCGGAAATTGTAAATATGATGACGACAGGGCATATGGACATGTACAATTCCGATACGAGCGATGATTCAATGATGATTGCCAACGGTTCACCACATGATCAAAATGAACCCCATTACACGAATTTAGATCAACAGCATGGCGATATGAAAGGTCAGTTTAATGGTCCCAAAACTTGGACACAAGATGATATGAATTCAGCTTTAGATGCACTGAAGAATCAAAACATGAGCCTGACGAAAGCATCCGTTACCTATGGCATCCCCTCAACCACCCTCTGGCAAAGGGCCCACCGCATGGGCATTGAAACACCGAAGAAGGAAGGAGGTACAAAATCATGGAACGAAGACTCACTCAACAATGCACTGGAGGCTTTGCGTTCGGGACAAATATCGGCGAATAAAGCATCGAAAGCCTTTGGTATACCTTCGTCAACGTTGTATAAAATAGCACGACGTGAAGGTATACGATTGGCAGCGCCGTTTAATGCCGCCCCCACCACCTGGACGCCGGAAGATTTGGAACGGGCCTTGGAGGCAATACGTGCTGGGCATACATCGGTACAGAAGGCAAGTGCAGAATTTGGTATACCCACAGGCACATTATATGGTCGTTGTAAACGTGAGGGCATCGAATTATCCCGTTCAAATCCTACACCCTGGTCTGAAGATGCTATGAATGAAGCTTTAAATTCTGTGCGCATTGGCCAAATGTCTATAAATCAAGCTGCTATCCATTATAATTTACCCTATAGTTCTTTATATGGTCGCTTTAAGCGCGGTAAATACGATGTGGCCAATACAAGTGGTACTTCCATCAATAATACATCGGGCAATACCTCTGGTAGTATTGAAATTATTGAACATAGTCAAGAGAATTCGttgcCTATGTTTCAGCAACAATTCCAATATAGTCCATCGCCGCATCAGCAACAGCACGGTGGCAGTAGTACACCGCAGCAAAGTCAAACGCCACAGCATCTACAGCAACATGTTGTGCACATACAGCAACAGCATCATCAGCAACAGACTCAACATGCCCAACATATCCAACAGCAAGATGTTGTAACATCGTCAagtcaacaacagcagcaacaacaacaagtccaacagcaacaacatgcCAGCAATTCGGCAGCCtcccaacagcaacaacaacaacagcagcaacaacaaattcaACAGATTTATCATCATCACAGTACACCCGAGAGAAGTTGA
- Protein Sequence
- MAQRSHQYFSLRWNNYQNTMTSVFQQLREDLSFVDVTLSCEHGSLKAHKVVLSACSSYFQKLLLENPCKHPTIILPGDIIFTDLKTIIDFVYRGEIDVTESELQGLLRTAEQLKIKGLCETAENADDLNDTATATITVSENIQQAVVGNIVNATVVPGPQSPPIPHQQHQQPQQQTSQQQQQQQQQQHQHQQQQLTTTAVLSPGSAQQLAATGQLVTSTPATTPQQQQQQQQQQRKSRVRKRSKSPDLQLQQQQQHHQQQQNQQHPQAILIQNQNQAAIVSLQQTSAGNYIPVSGVQTVTTSVAGGPQQQQQQTTIVTADDSDSDKPSLQKICKTEASSASPASTSSASASNNAGGVTAVTASGTAIVTQIVVARDGKDKNMTSLGMGMNGGILGVPMGFLDFAPEPPAPSATPVTVTEHVDLSCNPSTDTRDLSNPSEPLDIDNHLAQHMIQRLDQSPMHTIHHQTGEESNSNLVQHIKSEVIDAKQQQQQQQQQQQQAAAVAAAHHQAQQQQLHAQQLAAAQGQTHQQQQQQAAHQQQQQQQQAHQQHHQQQQAHQQHHQEITGATVMEIDPSQIKHEPGMIITPEIVNMMTTGHMDMYNSDTSDDSMMIANGSPHDQNEPHYTNLDQQHGDMKGQFNGPKTWTQDDMNSALDALKNQNMSLTKASVTYGIPSTTLWQRAHRMGIETPKKEGGTKSWNEDSLNNALEALRSGQISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGHTSVQKASAEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRIGQMSINQAAIHYNLPYSSLYGRFKRGKYDVANTSGTSINNTSGNTSGSIEIIEHSQENSLPMFQQQFQYSPSPHQQQHGGSSTPQQSQTPQHLQQHVVHIQQQHHQQQTQHAQHIQQQDVVTSSSQQQQQQQQVQQQQHASNSAASQQQQQQQQQQQIQQIYHHHSTPERS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00979276;
- 90% Identity
- iTF_00258784;
- 80% Identity
- iTF_00922207;