Pmel006273.1
Basic Information
- Insect
- Phyto melanocephala
- Gene Symbol
- -
- Assembly
- GCA_941918875.1
- Location
- CALNXE010000604.1:352555-388639[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 8.6e-11 1.1e-07 32.1 0.0 1 38 545 583 545 588 0.89 2 4 2.7e-13 3.4e-10 40.1 0.0 2 39 600 637 599 640 0.94 3 4 3.2e-17 4e-14 52.7 0.0 1 45 654 699 654 699 0.98 4 4 8.9e-19 1.1e-15 57.6 0.0 1 43 706 749 706 751 0.96
Sequence Information
- Coding Sequence
- ATGACAGCAGAAAAGAGAGTGGATACATGTTTAAGGGAAGAGATAGACAGACAATCTTCTAACAACATTATCTTAAGGGGTCTTCTACGCACCGCTGAACAGTTGAAAATTAAGGGTCTTTGTGAGACAGCAGAAAACGCCGATGATCTGAATGATACGGCCACAGCAACAATAACAGTATCAGAGAATATCCAGCAGGCAGTCGTTGGCAATATTGTGAATGCTACAGTAGTGTCCGGTCAGCAATCTCCGCCTATACCCCACCAACAGCATCAGCAACAACAGCAGCAGCAGCAACAACAGCATCAGCAACAGCAAATAACGACAACTGCCGTTTTAAGTCCCGGAAGTGCACAGCAGTTAGCTGTCGCCGCACAATTGGTAACATCAACACCTGCCACAACACCGCAACAACAGCAGCAACAGCAACGAAAATCCAGAGTACGCAAACGTTCAAAATCACCCGATTTACAGCTGCAACAACAGCAACAGAATCAACAACAACAGACAATAGTAATACAAAATCAAAATCAAACTTCTATTGTCAGTCTACAACAGACATCGGCCGGGAACTATATACCCGTATCAGGAGTACAAACGGTAACCACCAGTGCAGCGATTGGGCAACAGCACCAGCATCAGCAACAACAACAGACCACCACGATTGTAACGGCGGACGATTCGGATTCGGATAAACCGTCATTGCAAAAGATTTGCAAAACTGAAGCGTCCTCAGCTTCACCGGCGTCCACATCATCGGCATCAAATAATGCTGGTGGCGTAACTGCGGTCACAGCATCTGGCACAGCGATCGTAACACAAATTGTAGTAGCAAGAGACGGCAAAGATAAAAATATGACTAGTTTAGGCATGGGCATGAACGGTGGCATTCTAGGAGTCCCTATGGGCTTTTTAGATTTTGCCCCTGAACCACCGGCACCCTCAGCAACACCTGTCACGGTTACAGAACACGTAGATTTATCCTGTAACCCCAGCACGGATACCAGAGATTTATCAAATCCCTCAGAACCGCTCGATATCGATAATCATTTGGCTCAGCACATGATACAACGGCTCGATCAATCTCCCATGCATACCATACATCATCAAACCGGCGACGAATCAAATTCGAATCTGGTGCAGCATATAAAAAGTGAAGTTATCGATGTTAAACAGCAACAGGTCCAACATCAGCAACAGCAAGCCGCAGCAGTTGCCCATCATCAAGCTCAACAGCAACAGTTGCATGCCCAACAATTAGCGGCAGCGCAAGGGCAAGCACATCAACAGCAGCAACAACAGGCAGCCCATCAGCAGCAACAACATCAACATCAGGCACACCAACAACACCACCAGCAACAGGCCCACCAGCAACATCATCAGGAGATAACCGGAGCCACCGTCATGGAGATTGATCCGAGCCAAATAAAACATGAGCCGGGCATGATAATAACACCGGAAATTGTAAATATGATGACGACAGGACATATGGACATGTACAATTCCGATACGAGCGATGATTCAATGATGATTGCCAACGGTTCACCACATGATCAAAGTGAACCCCATTACACGAATTTAGATCAACAGCATGGCGATATGAAAGGTCAGTTTAATGGTCCCAAAACTTGGACACAAGATGATATGAATTCAGCTTTAGATGCACTGAAGAATCAAAACATGAGTCTGACGAAAGCATCCGTTACCTATGGCATCCCCTCAACCACCCTTTGGCAAAGGGCCCATCGCATGGGCATCGAAACACCGAAGAAGGAAGGAGGCACAAAATCATGGAACGAAGACTCGCTCAACAATGCACTGGAGGCTTTGCGTTCGGGACAAATATCGGCCAACAAAGCATCGAAAGCCTTTGGTATACCTTCGTCGACGTTGTATAAAATAGCACGACGTGAAGGTATACGATTGGCAGCACCATTTAATGCCGCCCCCACCACCTGGACACCAGAAGATTTGGAAAGGGCCTTGGAAGCAATACGGGCTGGCCATACGTCCGTACAGAAGGCAAGTGCAGAATTTGGTATACCCACAGGTACATTATACGGTCGTTGTAAACGTGAGGGCATTGAATTATCCCGTTCAAATCCTACACCCTGGTCTGAAGACGCCATGAACGAAGCTTTAAATTCTGTGCGCATTGGCCAAATGTCTATAAATCAAGCAGCTATACACTACAATCTACCGTATAGCTCTTTGTATGGTCGCTTTAAACGTGGCAAATACGATGTGACCAATACGAGTGGTACATCCATAAATAATACATCTGGCAATACCTCTGGTAGTATTGAAATTATTGAACATAGTCAAGAGAATTCGTTGCCTATGTTTCAGCAACAATTCCAATATAGTCCATCGCCGCATCAGCAACAGCACGGTGGTAGTAGTACACCGCAAACGCCACAGCATCTACAGCAACATGTTGTGCACATACAGCAACATCATCAGCAACAGAGCCAACATGCCCAACATATCCAACAGCAGGATGTTGTAACCTCGTCAAGTCAACAACAGCAAGTCCAACAGCAACAACATGCCAGCAATTCGGCAGCCTCCCAACAGCAGCAACAAATTCAGCAAATCTACCATCACCACAGTACACCCGAAAGAAGTTGA
- Protein Sequence
- MTAEKRVDTCLREEIDRQSSNNIILRGLLRTAEQLKIKGLCETAENADDLNDTATATITVSENIQQAVVGNIVNATVVSGQQSPPIPHQQHQQQQQQQQQQHQQQQITTTAVLSPGSAQQLAVAAQLVTSTPATTPQQQQQQQRKSRVRKRSKSPDLQLQQQQQNQQQQTIVIQNQNQTSIVSLQQTSAGNYIPVSGVQTVTTSAAIGQQHQHQQQQQTTTIVTADDSDSDKPSLQKICKTEASSASPASTSSASNNAGGVTAVTASGTAIVTQIVVARDGKDKNMTSLGMGMNGGILGVPMGFLDFAPEPPAPSATPVTVTEHVDLSCNPSTDTRDLSNPSEPLDIDNHLAQHMIQRLDQSPMHTIHHQTGDESNSNLVQHIKSEVIDVKQQQVQHQQQQAAAVAHHQAQQQQLHAQQLAAAQGQAHQQQQQQAAHQQQQHQHQAHQQHHQQQAHQQHHQEITGATVMEIDPSQIKHEPGMIITPEIVNMMTTGHMDMYNSDTSDDSMMIANGSPHDQSEPHYTNLDQQHGDMKGQFNGPKTWTQDDMNSALDALKNQNMSLTKASVTYGIPSTTLWQRAHRMGIETPKKEGGTKSWNEDSLNNALEALRSGQISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGHTSVQKASAEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRIGQMSINQAAIHYNLPYSSLYGRFKRGKYDVTNTSGTSINNTSGNTSGSIEIIEHSQENSLPMFQQQFQYSPSPHQQQHGGSSTPQTPQHLQQHVVHIQQHHQQQSQHAQHIQQQDVVTSSSQQQQVQQQQHASNSAASQQQQQIQQIYHHHSTPERS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00979276;
- 90% Identity
- iTF_00258784;
- 80% Identity
- -