Chom014176.1
Basic Information
- Insect
- Cochliomyia hominivorax
- Gene Symbol
- -
- Assembly
- GCA_004302925.1
- Location
- PYHX01001906.1:119094-127411[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 3.1e-11 6.6e-08 32.1 0.0 1 38 537 575 537 580 0.89 2 4 9.7e-14 2.1e-10 40.1 0.0 2 39 592 629 591 632 0.94 3 4 1.2e-17 2.4e-14 52.7 0.0 1 45 646 691 646 691 0.98 4 4 3.2e-19 6.9e-16 57.6 0.0 1 43 698 741 698 743 0.96
Sequence Information
- Coding Sequence
- atgacaGCCggTCTTTTGCGCACCGCTGAACAGTTAAAAATCAAAGGACTTTGTGAGACAGCAGAAAATGCCGATGATTTGAGTGATACGGCCACAGCAACAATAACCGTTTCAGAGAATATCCAACAAGCTGTCGTTGGTAATATTGTTAATGCCACAGTAGTGCCGGGTCAACAGTCGCCTCCTATACCCCACCAACAACATCAGCCACCgcagcagcaacatcaacaccagcaacagcagcaacaacaacagcaacaccaacagcagcaacaacagcaacaaataacCACAACTGCTGTATTAAGTCCGGGTGGTGCACAACAATTTGCCGCTGCCGGACAATTGGTAACATCTACACCTGCCTCCACaccccaacaacaacaacgaaaatcCAGAGTACGTAAACGTTCAAAATCACCGGATCTTCAACAGCAACTGCAGCAACAGAATCAACAACATCCCCAGgcaatattaatacaaaatcaaaatcaagcTGCTATTGTTAGTCTACAACAGACATCGGCTGGTAATTATATACCCGTGTCTGGTGTACAAACAGTAACCACAAGTGTAGCGGCGGGTGGAGCacaacatcagcagcaacaacaacagaccACCATTGTTACAGCCGACGATTCGGATTCGGATAAACCTTCTTTGCAAAAGATTTGTAAAACTGAAGCCGTGTCTTCAGCTTCACCGGCGTCCACTTCATCGGCATCAGCATCAAATAATGCTGGTGGCGTAACTGCGGTCACAGCTTCGGGTACAGCGATCGTAACACAAATTGTAGTAGCAAGAGACggaaaagataataaaaatatgactaGTTTAGGCATGGGAATGAATGGTGGCATTCTAGGAGTCCCTATGGGCTTTTTAGATTTTGCCCCTGAACCACCGGCACCCTCAGCAACACCTGTCACCGTTACAGAACATGTAGATTTATCCTGTAACCCCAGCACGGATACCAGAGATTTATCAAATCCCTCAGAACCGCTCGATATCGACAATCATTTGGCTCAGCATATGATACAACGGCTCGATCAATCTCCCATGCATACCATACATCATCAGACTGGCGACGAATCAAATTCGAATCTAGTACAACATATAAAAAGTGAAGTTATTGATGCCAAACAGCAACAGgtccaacaacagcaacaacaacaagcagCTGCTGCAGCCGCCGCCCATCATCAAGCTCAGCAACAACAGTTGCATGCACAACAATTAGCAGCAGCGCAAGGACAAACacatcagcagcaacagcaacaggccgctcatcagcagcaacaacagcaacagcaggcACATCAACAGCATCATCAGCAACAAGCCCACCAGCAGCATCACGAGATAAGCGGAGCCACCGTTATGGAGATTGATCCAAGCCAAATAAAACATGAGCCGGGCATGATAATAACACCGGAAATTGTAAATATGATGACGACAGGACATATGGACATGTACAATTCCGATACGAGCGATGATTCAATGATGATTGCCAATGGTTCACCACATGATCAAAATGAACCCCATTACACAAATCTAGATCAGCAGCATGGCGATATGAAAGGTCAGTTTAATGGTCCCAAAACTTGGACACAAGATGATATGAATTCAGCTTTAGATGCACTGAAGAATCAAAACATGAGCCTGACGAAAGCATCCGTTACCTATGGCATCCCCTCAACCACCCTCTGGCAAAGGGCCCACCGCATGGGCATTGAAACACCCAAGAAGGAAGGAGGTACCAAATCATGGAATGAAGACTCACTCAACAATGCACTGGAGGCTTTACGCTCAGGACAAATATCAGCGAATAAAGCATCAAAAGCCTTTGGTATACCTTCGTCGACGTTGTATAAAATAGCACGACGTGAAGGTATACGATTGGCAGCGCCGTTTAATGCCGCCCCCACCACTTGGACACCAGAAGATTTGGAACGTGCCTTGGAGGCAATACGTGCGGGTCATACATCGGTACAGAAGGCAAGTGCAGAATTTGGTATACCAACAGGCACTTTATATGGTCGTTGTAAACGTGAGGGTATTGAATTATCTCGTTCAAATCCTACACCATGGTCAGAAGATGCTATGAATGAAGCTTTAAATTCTGTACGcATTGGCCAAATGTCTATAAATCAAGCTgctattcattataatttaccGTACAGCTCTTTATATGGTCGCTTTAAACGTGGCAAATATGATGTTACCAATACAAGTGGTACTTCCATTAATAATACATCGGGCAATACCTCTGGTAGTATTGAAATTATCGAACATAGTCAAGAGAATTCGttGCCTATGTTTCAGCAACAATTCCAATATAGTCCATCACCGCATCAGCAACAACACGGTGGCAGTAGTACACCGCAACAGAGTCAAACGCCACAACATCTACAGCAACATGTTGTGCAtatacaacaacatcatcaacaacagaGCCAACATGCGCAACATATCCAACAACAGGATGTTGTAACCTCATCAAGTCAGCAGCAAgtccaacagcaacaacatgcTAGCAATTCGGCAGCctcccaacaacaacaacagcagcaacaacaacaaattcaacAGATCTATCATCATCACAGTACACCCGAGAGAAGTTGA
- Protein Sequence
- MTAGLLRTAEQLKIKGLCETAENADDLSDTATATITVSENIQQAVVGNIVNATVVPGQQSPPIPHQQHQPPQQQHQHQQQQQQQQQHQQQQQQQQITTTAVLSPGGAQQFAAAGQLVTSTPASTPQQQQRKSRVRKRSKSPDLQQQLQQQNQQHPQAILIQNQNQAAIVSLQQTSAGNYIPVSGVQTVTTSVAAGGAQHQQQQQQTTIVTADDSDSDKPSLQKICKTEAVSSASPASTSSASASNNAGGVTAVTASGTAIVTQIVVARDGKDNKNMTSLGMGMNGGILGVPMGFLDFAPEPPAPSATPVTVTEHVDLSCNPSTDTRDLSNPSEPLDIDNHLAQHMIQRLDQSPMHTIHHQTGDESNSNLVQHIKSEVIDAKQQQVQQQQQQQAAAAAAAHHQAQQQQLHAQQLAAAQGQTHQQQQQQAAHQQQQQQQQAHQQHHQQQAHQQHHEISGATVMEIDPSQIKHEPGMIITPEIVNMMTTGHMDMYNSDTSDDSMMIANGSPHDQNEPHYTNLDQQHGDMKGQFNGPKTWTQDDMNSALDALKNQNMSLTKASVTYGIPSTTLWQRAHRMGIETPKKEGGTKSWNEDSLNNALEALRSGQISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGHTSVQKASAEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRIGQMSINQAAIHYNLPYSSLYGRFKRGKYDVTNTSGTSINNTSGNTSGSIEIIEHSQENSLPMFQQQFQYSPSPHQQQHGGSSTPQQSQTPQHLQQHVVHIQQHHQQQSQHAQHIQQQDVVTSSSQQQVQQQQHASNSAASQQQQQQQQQQIQQIYHHHSTPERS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00979276;
- 90% Identity
- iTF_00258784;
- 80% Identity
- -