Tfer040926.2
Basic Information
- Insect
- Tachina fera
- Gene Symbol
- -
- Assembly
- GCA_905220375.1
- Location
- LR999967.1:102452475-102470577[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 7e-11 2e-07 32.0 0.0 1 38 582 620 582 625 0.89 2 4 2.2e-13 6.1e-10 40.0 0.0 2 39 637 674 636 677 0.94 3 4 2.6e-17 7.2e-14 52.6 0.0 1 45 691 736 691 736 0.98 4 4 7.9e-19 2.2e-15 57.4 0.0 1 43 743 786 743 788 0.96
Sequence Information
- Coding Sequence
- ATGGGCTGGCGTCATCATTGGGCCGTATTTTTCCGAAATGAAGCCGGTCAGGCAGTTACTGTGAATGGTGTTCGCTATCGTGAGATGATAACGAACTTTTTATGGCCCGAATTGGAAGATATGGATGTTGCTAACGAAACAATGGCTCTTTTGCGCGACAAATTCAATGTCCCTGTTATTTCACGTGGTGGCGATGGTCTTTTGCGCACCGCtgaacagttaaaaattaaaggtctTTGCGAGACAGCAGAAAATGCCGATGATCTTAACGATACGGCCACAGCAACAATAACAGTATCAGAGAATATACAACAAGCTGTCGTTGGTAATATTGTCAATGCCACAGTAGTGCCGGGACAGCAATCTCCTCCAATACCCCACCAACAACATCAGccacaacagcagcagcaacaacagcagcaccaacaccaacaccagcaacagcaacaattaACAACTACCGCCGTTTTAAGTCCCGGAAGTGCTCAACAGTTAGCAGTTGCCGGACAATTGGTAACCTCAACGCCTGCCACAACAccccagcagcagcagcaacagcagcaacaacgaAAATCCAGAGTACGCAAACGTTCAAAATCCCCGGACCTACAgttgcaacagcaacagcaccaTCAGCAACAGAATCAACAGCACCCACAGGCAATATTaatacaaaatcaaaatcaagCTGCCATTGTCAGTCTACAACAGACATCGGCTGGTAACTATATACCCGTATCGGGCGTACAAACGGTAACCACCAGCGTAGCGGGTGGCCAACAGCAACAACATACCACCATCGTAACAGCGGACGACTCGGATTCGGATAAACCCTCCCTGCAAAAGATCTGCAAAACTGAGGCGTCTTCAGCTTCACCGGCGTCCACTTCATCGGTATCGGCAACAAATAATGCTGGTGGCGTAACTGCAGTGACAGCATCGGGCACAGCGATCGTAACACAAATTGTAGTAGCAAGAGACggaaaagataaaaatatgaCTAGTTTAGGCATGGGAATGaaTGGTGGCATTCTAGGAGTCCCTATGGGCTTTTTAGATTTTGCCCCCGAACCACCGGCACCCTCAGCAACACCTGTCACGGTTACAGAACATGTAGATTTATCTTGTAACCCCAGCACGGACACCCGAGATCTATCAAATCCATCAGAACCGCTCGATATCGACAATCATTTGGCTCAGCACATGATACAACGGCTCGATCAATCTCCCATGCATACCATACATCATCAGACTGGCGACGAATCAAATTCGAATCTGGTCCAGCATATAAAAAGCGAAGTAATTGATGccaaacaacagcaacaggTTCAACAGCATCAACAAGCCGTTGCCCATCATCAGGCTCAGCAGCAACAGTTGCATGCACAACAATTAGCAGCGCAGGGGCAATCACATCAACAGCAGCAGGCAGCCCATCAGCAGCAGCAGGCACATCAACATCACCAACAGCAGGCCCACCAGCAGCATCACCAAGAGATAACCGGAGCCACCGTTATGGAGATTGATCCGAGCCAAATAAAACATGAACCGGGAATGATAATAACACCGGAAATTGTAAATATGATGACGACAGGGCATATGGACATGTACAATTCCGATACGAGCGATGATTCAATGATGATTGCCAACGGTTCACCACACGATCAAAATGAACCCCATTACACAAATTTAGATCAACAGCATGGCGATATGAAAGGTCAGTTTAATGGTCCCAAAACTTGGACACAAGATGATATGAATTCAGCTTTAGATGCATTGAAGAATCAAAATATGAGCCTGACGAAAGCATCCGTTACCTATGGCATCCCCTCAACCACGCTCTGGCAAAGGGCCCACCGCATGGGCATCGAAACACCGAAGAAGGAAGGAGGCACGAAATCATGGAACGAAGACTCGCTAAACAATGCTCTGGAGGCTCTGCGTTCTGGACAAATATCGGCCAACAAGGCATCGAAGGCCTTTGGTATACCTTCGTCGACGTTGTATAAAATAGCACGACGTGAGGGTATACGATTGGCAGCGCCGTTCAACGCCGCCCCCACCACCTGGACTCCTGAAGATTTGGAAAGGGCCTTGGAAGCAATACGTGCGGGTCATACATCGGTACAGAAGGCAAGTGCAGAATTTGGTATACCCACAGgcaCATTGTACGGTCGTTGCAAACGTGAGGGCATTGAATTATCTCGTTCGAATCCAACGCCTTGGTCTGAAGATGCTATGAATGAAGCGTTAAATTCTGTGCGCATTGGCCAAATGTCTATTAATCAAGCTGCTATCCATTATAATCTACCCTACAGTTCTTTATATGGTCGCTTTAAACGTGGCAAATATGATGTGGCCAATACAAGCGGTACTTCCATAAATAATACATCGGGAAATACCTCCGGTAGTATTGAAATCATTGAACATAGTCAAGAGAATTCGTTGCCTATGTTTCAGCAACAATTCCAATATAGTCCATCGCCGCATCAGCAACAGCACGGCGGCAGTAGTACACCGCAACAAAGTCAAACGCCACAGCATCTACAGCAACATGTTGTGCACATACAGCAACACCATCAGCAACAGACCCAACATGCGCAACATATCCAACAGCAAGATGTTGTAACATCGTCAAGCCAACAGCAAGTCCAACAGCAGCAACATGCCAGCAATGCGGCAGCCTCCCAACAACAGCAAATTCAACAAATCTATCATCATCACAGTACACCCGAAAGAAGTTGA
- Protein Sequence
- MGWRHHWAVFFRNEAGQAVTVNGVRYREMITNFLWPELEDMDVANETMALLRDKFNVPVISRGGDGLLRTAEQLKIKGLCETAENADDLNDTATATITVSENIQQAVVGNIVNATVVPGQQSPPIPHQQHQPQQQQQQQQHQHQHQQQQQLTTTAVLSPGSAQQLAVAGQLVTSTPATTPQQQQQQQQQRKSRVRKRSKSPDLQLQQQQHHQQQNQQHPQAILIQNQNQAAIVSLQQTSAGNYIPVSGVQTVTTSVAGGQQQQHTTIVTADDSDSDKPSLQKICKTEASSASPASTSSVSATNNAGGVTAVTASGTAIVTQIVVARDGKDKNMTSLGMGMNGGILGVPMGFLDFAPEPPAPSATPVTVTEHVDLSCNPSTDTRDLSNPSEPLDIDNHLAQHMIQRLDQSPMHTIHHQTGDESNSNLVQHIKSEVIDAKQQQQVQQHQQAVAHHQAQQQQLHAQQLAAQGQSHQQQQAAHQQQQAHQHHQQQAHQQHHQEITGATVMEIDPSQIKHEPGMIITPEIVNMMTTGHMDMYNSDTSDDSMMIANGSPHDQNEPHYTNLDQQHGDMKGQFNGPKTWTQDDMNSALDALKNQNMSLTKASVTYGIPSTTLWQRAHRMGIETPKKEGGTKSWNEDSLNNALEALRSGQISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGHTSVQKASAEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRIGQMSINQAAIHYNLPYSSLYGRFKRGKYDVANTSGTSINNTSGNTSGSIEIIEHSQENSLPMFQQQFQYSPSPHQQQHGGSSTPQQSQTPQHLQQHVVHIQQHHQQQTQHAQHIQQQDVVTSSSQQQVQQQQHASNAAASQQQQIQQIYHHHSTPERS*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00979276;
- 90% Identity
- iTF_00258784;
- 80% Identity
- -