Bdah018283.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Bombus dahlbomii
Gene Symbol
-
Assembly
GCA_037178635.1
Location
CM074115.1:11500014-11509554[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 29 1.8e-05 0.0017 19.0 0.9 1 23 217 239 217 239 0.98
2 29 0.0098 0.91 10.4 3.7 1 23 262 285 262 285 0.96
3 29 0.00015 0.014 16.2 0.5 2 23 292 314 291 314 0.96
4 29 0.0073 0.68 10.8 0.0 1 21 335 355 335 356 0.94
5 29 0.0062 0.57 11.1 0.6 2 23 452 473 451 473 0.96
6 29 0.00097 0.09 13.6 1.4 1 23 479 502 479 502 0.97
7 29 0.00013 0.012 16.4 0.1 1 23 572 595 572 595 0.96
8 29 0.026 2.4 9.1 0.4 1 23 601 624 601 624 0.96
9 29 0.067 6.2 7.8 0.8 1 23 637 659 637 659 0.97
10 29 3.9e-05 0.0036 18.0 0.9 3 23 703 724 702 724 0.96
11 29 0.0014 0.13 13.1 0.9 2 23 784 807 783 807 0.95
12 29 3.4 3.1e+02 2.4 0.0 2 23 816 838 816 838 0.84
13 29 0.043 4 8.4 0.1 2 23 845 867 844 867 0.95
14 29 1.4e-05 0.0013 19.4 1.2 1 23 875 897 875 897 0.98
15 29 1 95 4.1 0.5 8 23 931 947 923 947 0.83
16 29 0.00023 0.021 15.6 3.3 1 23 950 973 950 973 0.97
17 29 0.0023 0.22 12.4 0.4 2 23 980 1002 979 1002 0.96
18 29 0.00099 0.092 13.6 3.9 1 21 1026 1046 1026 1047 0.95
19 29 0.0029 0.27 12.1 1.8 2 23 1061 1082 1060 1083 0.93
20 29 0.48 44 5.1 1.4 1 23 1086 1109 1086 1109 0.94
21 29 0.045 4.2 8.3 0.8 2 23 1116 1139 1115 1139 0.91
22 29 3.3 3.1e+02 2.5 0.2 2 23 1147 1169 1147 1169 0.94
23 29 0.24 23 6.0 2.7 2 23 1207 1229 1207 1229 0.96
24 29 0.31 29 5.7 0.1 2 23 1235 1257 1235 1257 0.96
25 29 6.1e-05 0.0057 17.4 0.2 1 23 1320 1343 1320 1343 0.96
26 29 0.048 4.5 8.2 3.0 1 21 1368 1388 1368 1389 0.93
27 29 0.54 50 5.0 1.3 2 23 1485 1507 1484 1507 0.94
28 29 0.31 29 5.7 0.2 2 23 1514 1536 1513 1536 0.94
29 29 2.3 2.2e+02 3.0 1.9 1 23 1547 1569 1547 1569 0.92

Sequence Information

Coding Sequence
ATGGAGCCCAGGGAACGCTACCAGGAGCTCTGCAGACTATGCGCATCCTACGACGCCGTCAAGATGGACATCTTCGGTCAAGAGGGCAAGAACAGACAGCTCGTTGACAAGATACAAGCTTGTCTGCCGTTTAAGATTGCAGAGAATGATCGACTACCGAAATGCCTCTGTTATCGGTGTATGtacaatttggaaaatttctatgattttAGAACAGCATGTGTTAATGCAGTGGCTCTCTTGGAAAGGTGTTTATCACCTTCGGAAtcgAATGGAGATGTTACAACCATCTTGACGTGCTGTAACGATTCAGAGTTTTTCGAAGGACGAAAAAGTATACCAGTGCTAATTCCAGAAGCTCCTATCGTAAATCCAAATGCTGCTTTAGGCACGCCACCCAGATTGAATTCTGACGGAGAGGCTGATCATGAGACAGAAGAAATTGATAACAGCGGGACAGACGAAGCAACAGTCATGGACGACTCTGAAGATCGTCATTCAGAGGAATATGAAATGGATATGGAGACAAATCCAAGTGATTTTTTGGAAATGACCTCGATAGTTGCGGAAGAACCTGAAGAATCAGGATCGAAACATCAGGATGTTCCTAGTAACTTATCAGAGCATACATCTCAACAACATGAAGTTTATGTTTGTTCCTTGTGCAGCAAAGCATTTAGTTCAAAGGGTCATTTGTCCTTGCATGCACGCATTCACGTTGGTGCCGGTGATGTGATTGGTGAAAAAGTTCTTACGGATGATCATACATCATATAAAAGGCCCTATCAGTGCGATCTCTGTCATAAATCATACTCCACTGCAAAACATCGTTGGGGTCATGTATCTACAACTCATAGAGGCCATCCGGCAGTGACATGCGGTTATTGTTCCCGTATCTACTCAACTCGAACAAATTTGGAAGAGCATATAAAGTCACGTCATGCTGGTCTTCCAGCACCTACGGAGGTTCCGCTGAACAATGCCTATCGGCCAGAAAGTAGATATCAATGCAATGCTTGTGGAAAGGTTTGCATCGATGCCATGGAATTGAATCTTCATGGTAGGATTTGTACCGAAGGACAGAGATTAGATCTTTCAGGAAAAAACGAGATTAGTGATAATAAAGTTGCGGATAGTTCAGAAGCTTCAAGTATTGGAAGTGATGACGATGGCAAAGATTATAGaagtGCGGAAGCTAAATTAGCGAAAAATCCtcaattaacaattttaaaacaagCATTAACGAAAGGAGATAGCCTTAAGCGAGATTTTGAAGACAAATTTACTACAAATTGCAAACCGAAAAAATTACCGAGAACAGAGCATACTGACTTTCAACATACTAAGAAATGGTATTGTGAATCGTGTCCTCAATGTTTTACTTCAGTTAATGATTTAAAAGAACACGAAGCAACTCACGATGCGGATAAGCCATTTATTTGTcttttatgtaaaaaagaCTTTTTTCTGAAATCTTCTTTAAGCAGGCATATTCAAACATTACATGGTGTTGATCCATGTCCTATGGTGGAAAGTGATAAGTGtctaaagaaaattgtttcttcaCATAATTGGAACGAATCTATGGATCTCGATTCGTACGAGGGTAAAACCTCTTCTGAATTTCCATTGTCTCCAGATACAAATGCAGAAAATGAGGACGACCACGACCATGAGAGTGGACAAGAGAATCTcattgaaattgaaactgtGTTTGTTTGTGAAATTTGTACTCGCGACTTTAATGACCGTGCGTCTCTTTGGCTTCATATTCGTGCTACTCACAAAGAATTTGCAGCATTTGCATGTGgtgtttgtttaaaaatttgtgcAGACAACACGCAACTTTTGAATCATGTAAATATGTACCACGGCGGCTCGAAATTACTACTCTCTGAACAGAGAAGGTACAGTTGTACCATTTGCGGTAGGCAACATGATtccagaaaaaaattaattgctcaTGTATCCATACATAATGTGGATCCAAATTATGATCCTGCTACCTTTGTTCagttaaatagtaattattaCGGAGAGAACATCAACGGTAACGAAACTGCAGAACAGATGCTTGACTACGAAGAGGATAGCGATAAAGTGGActgttatatttgttataaatcgTTTCCAAACGAAGATCATTTAATACGACATCAAAGAAATGCGCACAGATCGGAACAATTAGTGCTAGCAGGAGATCCTTTAAATCCTTCGAGTTTAAATGGTGGTGGTAATAGAGCTCAATATCATCTCTTTTTCGTTTGTGAACTTTGTGGGAGTTCACATCCTAGTAAATGGGAACGTTGGCTACATGTTAGTTCGTCTCATAGCAATGAATCAGCCATAAAATGTGATCGTGAAGATTGCGGTAAAATTTTTGCTACAAAATCTCTAAGAAACGAGCATATTCAGCATCACGCGATTCAAGGTTCATCCCCAAATACTTGTGAAATTTGCGGTAAACTTTGGGGTAGTAGGGTCGATTATTGGAAACATGTTATGGGCGTTCATTCAGATACTGTTCCATTAATTTGTGGCGTCTGTTTAAAAGTGTTTCCAAATGTTTTGCAACTGAGTACTCATGTAAGATCGAAACATTGGCCATTAACGAATGGTGACTTTAGCTGTGACATTTGCGGTAGACCATATTCGAATAAATCTAAAATGTCCAGACATAGAAAGATCCATGGTTTTGAGGAAAGCTGTGAGAATGGGGCTGAAAATAGCGAGAATAAAGTAGAGGGACGAATGAGGGAAACAGAATTAATTTGCGAGCTTTGTGCAGATTTGAAGTTCACtagtttagaaaaattatgtaatcaTAGACGAATCGTTCATGGACTTTTCCCTTGCGATCTCTGTAATAAATGCTATGGAAGAACTTCACATTTATGGAAACATGTAAACAGAGTTCACAAAGGTCACGAAGATGTAACTTGCCCTTATTGTATGAAAACTAGCGCATCAAAAGATCATTTAGCAGCGcacatttcaaaaattcatagaTACGAACCTGATTCTAGAAAAGATGGGAAAGATAATAGACAATTTAAAACCGAAGAAGTTAGTTTACATTATtgtgaaaaatgtaataaaggTTTTCACAAGCGGTATCTATTGCGTAGACATATGAAAGGATGCCAGAATTACAGGAAAGACCCTGGAGCATTATTAACGAGATGCAGAGCTTgcgaaagaatatttaaagatcgTGCCAGTTTACAAAAGCATATCGAGAATCATCATAGTACATACACGTGTCATCTTTGTAATGAAACAATTACCTCAAAATTAGGCATTATGACGCATAACAGGGTGAAGCATATGGATCATCCAGATTTAACATGCAATTTTGGATCTTGTAGGAAATTATTCAGAACTAAAGAAGATTTAGAAGCCCATAGAACAGATCACAAaTACCATACCACTCCTAACGTTTGTGATTTCTGCGGTGATACTGTTGAAAATAAACTGAAGTTAAAAATGCACGTTTTATCTCTTCATCGCAATGAAATTGGTGTATCTTGTGGAGTGTGTTTAATACCAATGAAAGATCCGAAAGAACTTAAAAGTCACGTAGAAGAAGTTCATTCCGGTGTTCTTTCAAGACCCAATACGTGTCAAGTTTGTGGGAAACAATATGCTTCAAAATGGAAAGCGTTTGATCATACGAAAAAATGCCATGGAAAAGTATTTAGGACTTGCAAACAATGTCTAGCCGTTTTCACTGATGATTCTGCAATTAGAGATCATTATGAAACAATACATAATATCCCTAAAGATCAACTTGCGGCATTTGAACATAGATTAGATATTGGGTCGAAAAACGAAGATTTTGGAATAGAGTCTCCTGATATAATAGTGAAAGAGGAACCAGAGGATTTAGAATATGAAATAGATATGTGCGATGAAGATTCTAGTGACTCGAAAAGGAGAAGGTCCTTAACGGATACCTACGATTGTGAAATGTGTCCAGAAATGTTTGTAAACAGCGATGCACTTTCAAAACATTATCGTAACATGCACAATACCGATCCAGAAAGAAtgtttaaaagattaaaacagGATGAACAGAGAAGAATGCGTGGTAAACTGAATTTCTCTTGCAAGAATTGTAGGCGACAATTTTGCACTAAAACATTATATTGGAATCATGTTGCAACTTGCAGacgaaatatacgaaaagGAGAGGAAAATTTATCTTTACGAAATGACATGTTAAGCAGCCAACaagaatttttgaagaataacaatcaaataaagaaagaggagCCTACATCAGATTTAAATATTCCTGATTTCAATCTTTTTGAAGATATAAATCTTCAACTGTCTGGTCAGAGACCTCTCCCGAATCTTATGCCACTCACTCAGAGGGCGAAATCTTCAATAAAATGTTCAAGAAAGGATTCCAGGAAAGTTTATGATGAATCAACAAATACTGAATGTGCTTGTGAAGTGTGTGGAAAACAATGGCCAGCAAAGAAACATTTATGGCAACATTTAATTCGTTTCCATCGAGCGGAAGCAGCAGTCACTTGTGGAGTATGTTTGAAACTTTGTAAAGATTATGATGATTTGGCAGAACATTTGAAAGCTGCACACGAAGCGATATTATCAACcgaaggaaataattttacatgtaAAGTTTGCGGCAGGTATCACAATGCTCGTAGTAAATTGTTATTACACACAAGTATTCACATCGGTCATCCGGGTACTAGTACTTGGTGTCCAAAATGTCGGAAAAATATTACCGACGAAGCTGCACATTCGACTACGTGTAACACGAAGACGGAAGAAGgagaacaaatgaaaaataatgaaaaaacaGAGGGAAGTCTAATGGCTGATGATGCGATAATTGAAGAGGTGGAAGAAGGAGATTTTGAATCTGAAGcggaagaagaagcagaagaagaagcagaagaagaagcagaagaagaagcagataCGGAAGAATCAGAAAGTGGCAGTAGTACCGAAGCCGAAGAAGAACACGAAACGGAAGATGAATCTAGAGCAACCGGAGAAATTACTTACAATTCAGAGAGTGAGGATTCAGAGGAACTGGATAATTTGGAAATTGATGAAAAGAACATGGAGCATTATCCTTCAAAAAATCTTCCAGAATCCAAAAGTACAGaaacaaagaaacacGATGCAAATTTATCGGATGATGATGGACCTCCTGTTCTCAGTCCCATGATGCCTCTGCTTCCTGAGAATATGTCTGTAGAACAGCCGATAAGTCACAAACTAGGCCCTATAGTGCCTCTAACTGAGAAAGACATGTGCGATTTATCAGAGATTCGAAATCGATCCTGCCCGAAATCTATGACTCTATATGAAAAACGCTTATCCAATAACGAATCTCTAGAGTTGGAGTCTGAAACATTTGCAAATCGAAGCGACGAAGACTTTGAGGATACGAAGAACGAATCTGATGAAAACACCACTGAGGAAAATGAGGAAGAGAACGAGGATAACGAGGAGATCGAGGAGAACGATGGAATGGAATTAAACGAAGATGAAGATGTAGAACACGGAGATAACGAGGAAATTGAGAAAAACGGCGGGGACAGTGAACAGGTTGAAGACAACGAAGAGAATGAAGAAAACGGAGATATCGAAGAAATGgaagagaatgaaagaaacgaaggaattgATGAGTCAGAAGAacacgaagaaaacgaagatattGAAGAGACAGACGAAGAAAATGAGGAGAGAGAGGAGAACATGCAGTTGGATGATCTGGAGGGTGCTGTTCTAATGGTGACCGATGGGAATCAAATATTGATTCAGCAAGGAATATTAGAGGACGTGAATGAGAATTCAAACCAAGAATATGTTTATTCCGCGCTTAGGTACAGTACAGAGGAGGACAGCGACGATGCAAGGAAATGA
Protein Sequence
MEPRERYQELCRLCASYDAVKMDIFGQEGKNRQLVDKIQACLPFKIAENDRLPKCLCYRCMYNLENFYDFRTACVNAVALLERCLSPSESNGDVTTILTCCNDSEFFEGRKSIPVLIPEAPIVNPNAALGTPPRLNSDGEADHETEEIDNSGTDEATVMDDSEDRHSEEYEMDMETNPSDFLEMTSIVAEEPEESGSKHQDVPSNLSEHTSQQHEVYVCSLCSKAFSSKGHLSLHARIHVGAGDVIGEKVLTDDHTSYKRPYQCDLCHKSYSTAKHRWGHVSTTHRGHPAVTCGYCSRIYSTRTNLEEHIKSRHAGLPAPTEVPLNNAYRPESRYQCNACGKVCIDAMELNLHGRICTEGQRLDLSGKNEISDNKVADSSEASSIGSDDDGKDYRSAEAKLAKNPQLTILKQALTKGDSLKRDFEDKFTTNCKPKKLPRTEHTDFQHTKKWYCESCPQCFTSVNDLKEHEATHDADKPFICLLCKKDFFLKSSLSRHIQTLHGVDPCPMVESDKCLKKIVSSHNWNESMDLDSYEGKTSSEFPLSPDTNAENEDDHDHESGQENLIEIETVFVCEICTRDFNDRASLWLHIRATHKEFAAFACGVCLKICADNTQLLNHVNMYHGGSKLLLSEQRRYSCTICGRQHDSRKKLIAHVSIHNVDPNYDPATFVQLNSNYYGENINGNETAEQMLDYEEDSDKVDCYICYKSFPNEDHLIRHQRNAHRSEQLVLAGDPLNPSSLNGGGNRAQYHLFFVCELCGSSHPSKWERWLHVSSSHSNESAIKCDREDCGKIFATKSLRNEHIQHHAIQGSSPNTCEICGKLWGSRVDYWKHVMGVHSDTVPLICGVCLKVFPNVLQLSTHVRSKHWPLTNGDFSCDICGRPYSNKSKMSRHRKIHGFEESCENGAENSENKVEGRMRETELICELCADLKFTSLEKLCNHRRIVHGLFPCDLCNKCYGRTSHLWKHVNRVHKGHEDVTCPYCMKTSASKDHLAAHISKIHRYEPDSRKDGKDNRQFKTEEVSLHYCEKCNKGFHKRYLLRRHMKGCQNYRKDPGALLTRCRACERIFKDRASLQKHIENHHSTYTCHLCNETITSKLGIMTHNRVKHMDHPDLTCNFGSCRKLFRTKEDLEAHRTDHKYHTTPNVCDFCGDTVENKLKLKMHVLSLHRNEIGVSCGVCLIPMKDPKELKSHVEEVHSGVLSRPNTCQVCGKQYASKWKAFDHTKKCHGKVFRTCKQCLAVFTDDSAIRDHYETIHNIPKDQLAAFEHRLDIGSKNEDFGIESPDIIVKEEPEDLEYEIDMCDEDSSDSKRRRSLTDTYDCEMCPEMFVNSDALSKHYRNMHNTDPERMFKRLKQDEQRRMRGKLNFSCKNCRRQFCTKTLYWNHVATCRRNIRKGEENLSLRNDMLSSQQEFLKNNNQIKKEEPTSDLNIPDFNLFEDINLQLSGQRPLPNLMPLTQRAKSSIKCSRKDSRKVYDESTNTECACEVCGKQWPAKKHLWQHLIRFHRAEAAVTCGVCLKLCKDYDDLAEHLKAAHEAILSTEGNNFTCKVCGRYHNARSKLLLHTSIHIGHPGTSTWCPKCRKNITDEAAHSTTCNTKTEEGEQMKNNEKTEGSLMADDAIIEEVEEGDFESEAEEEAEEEAEEEAEEEADTEESESGSSTEAEEEHETEDESRATGEITYNSESEDSEELDNLEIDEKNMEHYPSKNLPESKSTETKKHDANLSDDDGPPVLSPMMPLLPENMSVEQPISHKLGPIVPLTEKDMCDLSEIRNRSCPKSMTLYEKRLSNNESLELESETFANRSDEDFEDTKNESDENTTEENEEENEDNEEIEENDGMELNEDEDVEHGDNEEIEKNGGDSEQVEDNEENEENGDIEEMEENERNEGIDESEEHEENEDIEETDEENEEREENMQLDDLEGAVLMVTDGNQILIQQGILEDVNENSNQEYVYSALRYSTEEDSDDARK