Pmec026039.1
Basic Information
- Insect
- Perdita meconis
- Gene Symbol
- -
- Assembly
- GCA_030770465.2
- Location
- JASKOS020000011.1:10891617-10903545[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 30 6.7e-06 0.0012 20.4 1.0 1 23 218 240 218 240 0.98 2 30 0.0096 1.7 10.4 3.7 1 23 263 286 263 286 0.96 3 30 0.00014 0.025 16.2 0.5 2 23 293 315 292 315 0.96 4 30 0.012 2.1 10.1 0.5 2 21 337 356 336 357 0.92 5 30 0.021 3.6 9.4 0.1 2 23 453 474 452 474 0.94 6 30 0.0026 0.45 12.2 0.6 1 23 480 503 480 503 0.94 7 30 0.00013 0.022 16.3 0.1 1 23 569 592 569 592 0.96 8 30 0.025 4.4 9.1 0.4 1 23 598 621 598 621 0.96 9 30 0.066 11 7.8 0.8 1 23 634 656 634 656 0.97 10 30 3.8e-05 0.0066 18.0 0.9 3 23 700 721 699 721 0.96 11 30 0.0044 0.77 11.5 0.9 2 23 780 803 779 803 0.95 12 30 3.3 5.8e+02 2.4 0.0 2 23 812 834 812 834 0.84 13 30 0.093 16 7.3 0.1 2 23 841 863 840 863 0.95 14 30 1.4e-05 0.0024 19.4 1.2 1 23 871 893 871 893 0.98 15 30 0.89 1.5e+02 4.2 1.6 3 23 921 943 919 943 0.90 16 30 0.00022 0.039 15.6 3.3 1 23 946 969 946 969 0.97 17 30 0.00053 0.093 14.4 0.2 2 23 976 998 975 998 0.96 18 30 0.00098 0.17 13.5 3.9 1 21 1022 1042 1022 1043 0.95 19 30 0.0029 0.5 12.1 1.8 2 23 1057 1078 1056 1079 0.93 20 30 0.052 9 8.1 1.2 1 23 1082 1105 1082 1105 0.95 21 30 0.034 5.8 8.7 0.6 3 23 1113 1135 1111 1135 0.88 22 30 3.3 5.6e+02 2.5 0.2 2 23 1143 1165 1143 1165 0.94 23 30 10 1.7e+03 0.9 0.0 2 23 1172 1194 1171 1194 0.88 24 30 0.24 42 6.0 2.7 2 23 1203 1225 1203 1225 0.96 25 30 4.1 7.1e+02 2.1 0.1 2 23 1231 1253 1231 1253 0.93 26 30 0.0012 0.2 13.3 0.2 1 23 1316 1339 1316 1339 0.96 27 30 0.0061 1.1 11.0 3.3 1 21 1364 1384 1364 1385 0.94 28 30 0.53 92 4.9 1.3 2 23 1483 1505 1482 1505 0.94 29 30 0.33 57 5.6 0.3 2 23 1512 1534 1511 1534 0.94 30 30 5.1 8.8e+02 1.8 2.6 1 23 1545 1567 1545 1567 0.92
Sequence Information
- Coding Sequence
- ATGGAGCCCCGGGAACGCTACCAGGAGCTCTGCAGACTGTGCGCATCCTACGACGCCGTCAAGATGGACATCTTCGGTCAAGAGGGCAAGAACAGACAGCTCGTTGACAAGATACAAGCCTGTTTGCCGTTTAAGATTGCAGAAAATGATCGATTACCAAAGTGTCTCTGTTACCGATGTATGtacaatttggaaaatttttacgACTTTAGAACTGCTTGCGTTAATGCAGTTGCCCTTTTGGAAAGATGTCTACCGCCTTCCGAAAAATCTGGAAACGGTATTACGACCACCTTGACATGCTACAATGATTCAGATCTGAAGAGGAAAGAGAGCATGCCAGTATTGATTCCAGAAGCTCCCATCGTGAATCCGAATGCTGCCTTAGGCACACCGCCCAGATTGAATTCCGATGGGGAAGCTGATCACGAGACGGAAGAAATGCTTGACAACAGTGGTACGGATGAAGCAACAGTTATGGACGACTCCGAGGATCGGCGTTCCGAGGAGTACGAAATGGACATGGAGACGAATCCCAGCGACTTCTTGGAGATGACTTCGATAGTCGCCGAGGAGCCAGAAGAATCGGAATCGAGGCACCAAGACGCGTCCAGCAGTGTGCCAGAGCATGCGTCTCAGCAACATGAAGTCTACGTTTGCTCTCTGTGCAACAAAGCGTTCAGTTCGAAGGGCCATTTATCTTTGCACGCGCGCATTCACGTCGGAGCCGGCGACGTGATCGGCGAGAAAGTTCTTACAGATGATCATACTTCCTACAAGCGACCTTACCAATGTGACCTCTGCCATAAGTCTTATTCGACTGCGAAGCATCGCTGGGGCCACGTTTCAACGACTCACAGAGGCCACCCGGCGGTGACATGCGGTTATTGTTCCCGAATCTACTCGACCAGAACAAATCTGGAAGAGCACATAAAATCGCGTCACGCTGGTCTTCCAGCACCCACGGAGGTTACAGTAAACAGTTCCTATCGTTCGGAAAGTAAATGTCAATGCAATACCTGCGGAAAGATATGCGCGGACGCCATGGAATTGAATCTCCATGGTAGAATCTGCGCCGAAGAACAGAAACTAGACATTTCGGGGAAAAGCGAGAATAGAGACAGTAAAACCATCGATACTTCGGAAGCGTCGAGTATTGGCAGCGACGATGATAGCAAAGACTATAGAACTGCAGAGGCGAAGCTGGCTAAAAATCCTCAGTTGACGATTTTGAAACAAGCATTGACTAAGGGAGACAGTCTTAAACGAGATTTCGAAGACAAGTTCACGTCGAACTGTAAACCAAAAAAGCTACCAAAAACTgACAATGTGGACGTGAAGAACGACAAAAAGTGGTATTGCGAATTCTGCCCCCTGTCTTTCTCCTCGGTCGAAGATTTCAAGGAGCACGAAGCGATTCACGATGCCGACAAACCATTCGTCTGTATTCTCTGCAAAAAGGATTTCGTTCTCAAGTCTTCCTTAAGCAGACACATACAAACCTTACACGGCGTCGATCCATGTCCAATCATAGAGAGTGATAAGTGCTTGAAGAAGGTCGTTTCACGGAACTGGCACGAAGCTATGAACCTTGATTACGAGAGAAAGAGTTCTTCTGAGTTCCCAATGTCGCCAGAGACTAATGCTGAAAACGAAGAAGACCGTGAGAGTGGGCAAGAAAACATGATCGAAATTGAAACTGTTTTCGTTTGCGAGATCTGCACTCGCGATTTCAACGATCGCGCGTCGCTTTGGCTTCACATTCGAGCCACTCACAAGGAGTTTGCAGCTTTTGCCTGTGGTGTTTGTTTGAAAATCTGTGCGGACAACACGCAACTTTTGAATCACGTGAACATGTACCACGGTGGTTCGAAATTATTACTTTCCGAGCAAAGAAGGTACAGCTGTACGATTTGCGGCAGACAACATGATTCGAGAAAGAAATTGATCGCGCATGTTTCTATACACAATGTGGATCCGAATTACGATCCTGCTACCTTCGTCCAATTAAATAGCAATTACTACGGGGAAAACGTTAATGGGAACGAAGCTGCCGAACAGATGCTCGATTTCGAAGAAGACGGGGACAAAGTGGACTGTTATATCTGTTACAAGTCATTTCCTAACGAGGATCATTTGATACGTCATCAGAGAAATGCGCATAGACCTGAACAATTAACGCCCACGGGAGACGCTCCGAACTCGTCCAGCTTGAATGGTGGAAACAGAGCTCAGTACCACCTTTTCTTTGTTTGCGAACTCTGCGGCAGCTCGCATCCGAGCAAATGGGAGCGTTGGTTGCACGTCAGTTCGACCCACGGCGACGAACCAGCTATAAAATGTGATCGCGAGGACTGTGGCAAAATCTTCGCGACGAAGTCTCTCAGAAACGATCACGTTCAGCATCACGCGATGCAAGGACCGTCGCCGAATACTTGTGAAATTTGTGGCAAACTTTGGGGCAGTCGAGTGGACTATTGGAAACACGTTATGGGCGTTCACTCGGACACGGTTCCATTGATTTGCGGCGTTTGCCTGAAAGTGTTCCCAAACGTGTTGCAATTAAGCACTCACGTCAAGTCGAAACACTGGCCATTAACCAACGGCGATTTTAGTTGTGATATTTGCGGGCGACCGTACTCGAACAAATCGAAGATGTCCAGGCATAGGAAGATCCACGGTTTCGAGGAGAATTACGATAACGGAGCGGAGAACAGTGAAAGCAAAGTGGACGGTCGAATCAGGGAAACCGAATTGAATTGCGAGCTTTGTACAGATTTGAAATTCACTAGTCTAGAGAAGCTGTGTAATCACAGGCGAATCGTTCACGGACTTTTCCCTTGCGACCTTTGCAATAAATGCTACGGGAGGACTTCGCACTTGTGGAAACACGTGAACAGAGTTCACAAAGGTCACGAGGACGTGACCTGTCCTTATTGCTTGAAGACGAGCGCTTCGAAAGATCATTTGGCTGCGCATATCGCCAAGATCCACAGATACGAGCCCGATTCTAGGAAGGAGGGAAAAGATGCCAGGCAATTTAAAACCGAAGAAGTGAATCTACATTATTGCGAGAAATGTAATAAAGGATTCCATAAACGGTACCTTTTGCGCAGACATATGAAGGGCTGTCAGAATTATAGGAAGGATCCTGGAGCGTTGTTAACGAGGTGCAGAGCTTgcgaaagaatatttaaagatcGTGCCAGTTTACAGAAGCATATCGAGAATCATCACAGTACATACACGTGTCATATTTGCAACGAGACGGTCACTTCGAAGTTAGGCATTATGACGCACAACAGGGTAAAACATATGGATCATCCAGATCTGACCTGCAGCTTTGGAGCTTGCAGGAAATTGTTTAGAACGAAGGAAGATTTGGAGGCCCATAGAAAAGACCATagATATCATACAAATCCAAATGTTTGCGACTTCTGCGGCGACACTGTTGAAAAcaaactgaaattaaaaatgcacGTATTGTCTCTCCACCGTAATGAAATTGGCGTTTCTTGCGGAGTTTGTTTAATCCCGATGAAGGATCCGAAAGAACTGAAAAGTCACGTAGAGGAAGTTCATTCTAGCGTTCTTTCGAAGCCCAACACGTGTCAAGTTTGTGGAAAACAATACGCGTCAAAATGGAAAGCGTTTGACCACACTAAAAAATGTCACGGAAAAGTATTCAGGACTTGCAAACAATGTTTGGCTGTATTTACGGAAGATTCCGCAATTAGGGATCATTACGAAGTGGTGCATAACGTTCCGAAAGATCAACTTGCTGCGTTCGAATATAGATTGGATATTGGATCGAAGAATGAAGATTTTGAAATAGAGTCGCCTGATATCACCGTCAAAGAAGAACCAGACGATTTAGAGTACGATGTGGATCTTTGCGACGAGGATTCGAGTGACTCGAAACGAAGGAGATCACTGACGGACACTTTCGATTGCGAAATGTGCCCCGAAATGTTCGTGAACGGCGACACGCTTTCAAAACATTACCGCAATATGCATAATACAGACCCGGAAAGAATGTTCAAGAGATTGAAACAGGAAGAGCAAAGAAGGATGCGTGGAAAAATGAGCTTCACGTGTAAGAATTGCAAGAGACAGTTTTGCACGAAGACATTGTATTGGAACCACATTGCGACTtgcaggagaaacattttacGTAAAGAAGAGGAATTTTCGCCTATGCGAAACGATGTTCTCGATAATCGggaagaaattttgaaaaataacaatCAGATTAAAAAGGAAGAGTCCACatcgaatttgaatattcctGATTTCAATCTCTTCGAAGatataaatcttcaattatcaGGACAAAGACCTCTTCCCAATCTCATGCCACTTTCTCAaagGGTGGTGAAATCGTCAGTGAAATGTTCAAGGAAGGATTCCAGGAAAGTTTACGACGAATCGACGAACACGGAATGCGCCTGCGAAGTCTGTGGAAAACAGTGGCCAGCAAAAAAACATTTATGGCAGCATCTAATTCGTTTCCATCGAGCAGAAGCTGCAGTCACTTGCGGTGTGTGCTTAAAACTTTGCAAAGATTATGACGATCTAGCGGAACATTTGAAAGCTATGCACGAAGCAATTCTTTCGAGCGAAGGAAACAATTTTACATGTAAAACATGTGGCAGGTATCACAATGCGCGTAGCAAGTTGTTACTACACACAAGTATTCACATTGGACACGTAAATAATGACACTATGTGTCCAAAAtgtcataaaaatattaccgaCGATCCTGATCATGTTAACACATGTTCTGGAAAGACGGAAGAAGAGGAACACTTGAAGAACGAAGAAAAACCAGAAGGAAGTCTGATAGCGGATGACACGATGATCGAAGAAGTAGAAGAAGGAGACTTTGAATCTGAAGCCGAGGAAGCGGATACCGAAGAGTCGGAGAGTGGCAGTAGCTCAGAAGGCGAAGAAGAAAACGATTCCGAAGGCGAATCCAGAGCCACCGGCGACATCACGTATAATTCGGACAGCGAAGACTCCGAAGAATTGGATAATTTAGAAATAGAAGAGAAAGACATGCAACACTTTGCTTTGGACCGCCTCcaaggaaataaaaatgcagCAACGGAGAAAAACGATGCAGACCTATCGGACGACGATGGTCCACCCATTCTCAGTCCCATGATGCCCCTGCATCCTGGAACTGTATCCGAAGAGCAGTCGATGAGCCGTAAACTCGGCTCGATGGTACCTTTAACTGAAAAAGACATCGGAATGTGCGACTTGTCGGAAATTCGTAATCAGTCTCCCTCGAAGTCTGTCAATTTCTATAAGAAAGGTTCGTCGAACAGTGAATCGTTCAAGTTCGAAGCGGAAACGTTTATGAATCGAAGCGACGAGGACTTCGATGATACGAAGAATGAATCCGATGAAAACTCCGTCGAGGAGAACGAGGACGAGAATGATGAAAATGACGAGAACGAGGATAACGAAGAGGAAGTCGAGGACAACGAAGAAAATATGGAAGATGGAGATTATGAAGGAACCGAAGAAATGGAAAAGAACGAAGTACGCGTGGAGAACGAGGATACTGAAGACAATGAAGATAACGAGGGGAGCGTGGAGAATGAAGAAAACGATGAGGAGATTGAAGAGAACGAGGAGAATGAAGAGATCGATGGTAGCGAGTCGAATGAAGAAAACGAGGATAACGAAATGATCGAAGAGGATGatgagaatgaagaaaacgAAGAGAATGATGATAATGAGGATAACGAAGAGAATGATGAGAACGAAGAAAACGAGGAGAAGGAGGAAAGCATGCAGTTTGATGATTTGGACGGTGCTGTTTTGATGGTGGCCGATGGGAATCAGATACTGATTCAGCAGGGCGTGTTGCAGGACGTGAATGACAACTCGAATCAGGAGTACGTTTATTCTGCGCTTAGGTACAGTTCGGAGGAGGAAAGCGACGATGCGAGGAAATGA
- Protein Sequence
- MEPRERYQELCRLCASYDAVKMDIFGQEGKNRQLVDKIQACLPFKIAENDRLPKCLCYRCMYNLENFYDFRTACVNAVALLERCLPPSEKSGNGITTTLTCYNDSDLKRKESMPVLIPEAPIVNPNAALGTPPRLNSDGEADHETEEMLDNSGTDEATVMDDSEDRRSEEYEMDMETNPSDFLEMTSIVAEEPEESESRHQDASSSVPEHASQQHEVYVCSLCNKAFSSKGHLSLHARIHVGAGDVIGEKVLTDDHTSYKRPYQCDLCHKSYSTAKHRWGHVSTTHRGHPAVTCGYCSRIYSTRTNLEEHIKSRHAGLPAPTEVTVNSSYRSESKCQCNTCGKICADAMELNLHGRICAEEQKLDISGKSENRDSKTIDTSEASSIGSDDDSKDYRTAEAKLAKNPQLTILKQALTKGDSLKRDFEDKFTSNCKPKKLPKTDNVDVKNDKKWYCEFCPLSFSSVEDFKEHEAIHDADKPFVCILCKKDFVLKSSLSRHIQTLHGVDPCPIIESDKCLKKVVSRNWHEAMNLDYERKSSSEFPMSPETNAENEEDRESGQENMIEIETVFVCEICTRDFNDRASLWLHIRATHKEFAAFACGVCLKICADNTQLLNHVNMYHGGSKLLLSEQRRYSCTICGRQHDSRKKLIAHVSIHNVDPNYDPATFVQLNSNYYGENVNGNEAAEQMLDFEEDGDKVDCYICYKSFPNEDHLIRHQRNAHRPEQLTPTGDAPNSSSLNGGNRAQYHLFFVCELCGSSHPSKWERWLHVSSTHGDEPAIKCDREDCGKIFATKSLRNDHVQHHAMQGPSPNTCEICGKLWGSRVDYWKHVMGVHSDTVPLICGVCLKVFPNVLQLSTHVKSKHWPLTNGDFSCDICGRPYSNKSKMSRHRKIHGFEENYDNGAENSESKVDGRIRETELNCELCTDLKFTSLEKLCNHRRIVHGLFPCDLCNKCYGRTSHLWKHVNRVHKGHEDVTCPYCLKTSASKDHLAAHIAKIHRYEPDSRKEGKDARQFKTEEVNLHYCEKCNKGFHKRYLLRRHMKGCQNYRKDPGALLTRCRACERIFKDRASLQKHIENHHSTYTCHICNETVTSKLGIMTHNRVKHMDHPDLTCSFGACRKLFRTKEDLEAHRKDHRYHTNPNVCDFCGDTVENKLKLKMHVLSLHRNEIGVSCGVCLIPMKDPKELKSHVEEVHSSVLSKPNTCQVCGKQYASKWKAFDHTKKCHGKVFRTCKQCLAVFTEDSAIRDHYEVVHNVPKDQLAAFEYRLDIGSKNEDFEIESPDITVKEEPDDLEYDVDLCDEDSSDSKRRRSLTDTFDCEMCPEMFVNGDTLSKHYRNMHNTDPERMFKRLKQEEQRRMRGKMSFTCKNCKRQFCTKTLYWNHIATCRRNILRKEEEFSPMRNDVLDNREEILKNNNQIKKEESTSNLNIPDFNLFEDINLQLSGQRPLPNLMPLSQRVVKSSVKCSRKDSRKVYDESTNTECACEVCGKQWPAKKHLWQHLIRFHRAEAAVTCGVCLKLCKDYDDLAEHLKAMHEAILSSEGNNFTCKTCGRYHNARSKLLLHTSIHIGHVNNDTMCPKCHKNITDDPDHVNTCSGKTEEEEHLKNEEKPEGSLIADDTMIEEVEEGDFESEAEEADTEESESGSSSEGEEENDSEGESRATGDITYNSDSEDSEELDNLEIEEKDMQHFALDRLQGNKNAATEKNDADLSDDDGPPILSPMMPLHPGTVSEEQSMSRKLGSMVPLTEKDIGMCDLSEIRNQSPSKSVNFYKKGSSNSESFKFEAETFMNRSDEDFDDTKNESDENSVEENEDENDENDENEDNEEEVEDNEENMEDGDYEGTEEMEKNEVRVENEDTEDNEDNEGSVENEENDEEIEENEENEEIDGSESNEENEDNEMIEEDDENEENEENDDNEDNEENDENEENEEKEESMQFDDLDGAVLMVADGNQILIQQGVLQDVNDNSNQEYVYSALRYSSEEESDDARK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00218574;
- 90% Identity
- -
- 80% Identity
- -