Basic Information

Insect: Bombus sibiricus
Gene Symbol: -
Assembly: GCA_014737505.1
Location: JACXIM010000160.1:536802-545651[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 30 1.5e-05 0.0017 19.1 0.9 1 23 196 218 196 218 0.98

2 30 0.0082 0.92 10.5 3.7 1 23 241 264 241 264 0.96

3 30 7.6e-05 0.0085 16.9 0.8 2 23 271 293 270 293 0.96

4 30 0.005 0.56 11.1 0.1 1 21 313 333 313 334 0.95

5 30 0.0052 0.58 11.1 0.6 2 23 430 451 429 451 0.96

6 30 0.013 1.5 9.8 1.2 2 23 458 480 457 480 0.91

7 30 0.00011 0.012 16.4 0.1 1 23 547 570 547 570 0.96

8 30 0.021 2.4 9.2 0.4 1 23 576 599 576 599 0.96

9 30 0.056 6.3 7.8 0.8 1 23 612 634 612 634 0.97

10 30 3.2e-05 0.0036 18.0 0.9 3 23 678 699 677 699 0.96

11 30 0.0012 0.13 13.1 0.9 2 23 759 782 758 782 0.95

12 30 2.8 3.2e+02 2.5 0.0 2 23 791 813 791 813 0.84

13 30 0.036 4 8.4 0.1 2 23 820 842 819 842 0.95

14 30 1.2e-05 0.0013 19.4 1.2 1 23 850 872 850 872 0.98

15 30 0.92 1e+02 4.0 0.8 3 23 900 922 898 922 0.83

16 30 0.00019 0.021 15.6 3.3 1 23 925 948 925 948 0.97

17 30 0.002 0.22 12.4 0.4 2 23 955 977 954 977 0.96

18 30 0.00083 0.093 13.6 3.9 1 21 1001 1021 1001 1022 0.95

19 30 0.0024 0.27 12.1 1.8 2 23 1036 1057 1035 1058 0.93

20 30 0.4 45 5.1 1.4 1 23 1061 1084 1061 1084 0.94

21 30 0.012 1.4 9.9 0.9 2 23 1091 1114 1090 1114 0.92

22 30 2.8 3.1e+02 2.5 0.2 2 23 1122 1144 1122 1144 0.94

23 30 8.5 9.5e+02 1.0 0.0 2 23 1151 1173 1150 1173 0.88

24 30 0.21 23 6.1 2.7 2 23 1182 1204 1182 1204 0.96

25 30 1.6 1.8e+02 3.3 0.1 2 23 1210 1232 1210 1232 0.95

26 30 5.2e-05 0.0058 17.4 0.2 1 23 1295 1318 1295 1318 0.96

27 30 0.015 1.7 9.6 3.0 1 21 1343 1363 1343 1364 0.94

28 30 0.45 50 5.0 1.3 2 23 1460 1482 1459 1482 0.94

29 30 0.26 29 5.7 0.2 2 23 1489 1511 1488 1511 0.94

30 30 1.1 1.2e+02 3.8 1.9 1 23 1522 1544 1522 1544 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	30	1.5e-05	0.0017	19.1	0.9	1	23	196	218	196	218	0.98
2	30	0.0082	0.92	10.5	3.7	1	23	241	264	241	264	0.96
3	30	7.6e-05	0.0085	16.9	0.8	2	23	271	293	270	293	0.96
4	30	0.005	0.56	11.1	0.1	1	21	313	333	313	334	0.95
5	30	0.0052	0.58	11.1	0.6	2	23	430	451	429	451	0.96
6	30	0.013	1.5	9.8	1.2	2	23	458	480	457	480	0.91
7	30	0.00011	0.012	16.4	0.1	1	23	547	570	547	570	0.96
8	30	0.021	2.4	9.2	0.4	1	23	576	599	576	599	0.96
9	30	0.056	6.3	7.8	0.8	1	23	612	634	612	634	0.97
10	30	3.2e-05	0.0036	18.0	0.9	3	23	678	699	677	699	0.96
11	30	0.0012	0.13	13.1	0.9	2	23	759	782	758	782	0.95
12	30	2.8	3.2e+02	2.5	0.0	2	23	791	813	791	813	0.84
13	30	0.036	4	8.4	0.1	2	23	820	842	819	842	0.95
14	30	1.2e-05	0.0013	19.4	1.2	1	23	850	872	850	872	0.98
15	30	0.92	1e+02	4.0	0.8	3	23	900	922	898	922	0.83
16	30	0.00019	0.021	15.6	3.3	1	23	925	948	925	948	0.97
17	30	0.002	0.22	12.4	0.4	2	23	955	977	954	977	0.96
18	30	0.00083	0.093	13.6	3.9	1	21	1001	1021	1001	1022	0.95
19	30	0.0024	0.27	12.1	1.8	2	23	1036	1057	1035	1058	0.93
20	30	0.4	45	5.1	1.4	1	23	1061	1084	1061	1084	0.94
21	30	0.012	1.4	9.9	0.9	2	23	1091	1114	1090	1114	0.92
22	30	2.8	3.1e+02	2.5	0.2	2	23	1122	1144	1122	1144	0.94
23	30	8.5	9.5e+02	1.0	0.0	2	23	1151	1173	1150	1173	0.88
24	30	0.21	23	6.1	2.7	2	23	1182	1204	1182	1204	0.96
25	30	1.6	1.8e+02	3.3	0.1	2	23	1210	1232	1210	1232	0.95
26	30	5.2e-05	0.0058	17.4	0.2	1	23	1295	1318	1295	1318	0.96
27	30	0.015	1.7	9.6	3.0	1	21	1343	1363	1343	1364	0.94
28	30	0.45	50	5.0	1.3	2	23	1460	1482	1459	1482	0.94
29	30	0.26	29	5.7	0.2	2	23	1489	1511	1488	1511	0.94
30	30	1.1	1.2e+02	3.8	1.9	1	23	1522	1544	1522	1544	0.92

Sequence Information

Coding Sequence: ATGGACATCTTCGGTCAAGAGGGCAAGAACAGACAGCTCGTTGACAAGATACAAGCTTGTCTACCGTTTAAGATTGCAGAAAATGATCGACTACCAAAATGCCTCTGTTATCGGTGTATGTACAATTTGGAAAATTTCTATGATTTTAGAACAGCATGTGTTAATGCAGTGGCTCTCTTGGAAAGGTGTTTATCACCTTCAGAATTGAATGGAGATGTTACAACCATCTTGACGTGCTGTAATGATTCAGAGTTTTTCGAAGGACAGAAAAGTATACCAGTGTTAATTCCGGAAGCTCCTATCGTAAATCCAAATGCTGCTTTAGGCACACCACCCAGATTGAATTCTGACGGAGAGGCTGATCATGAGACAGAAGAAATTGATAACAGTGGGACAGACGAAGCAACAATCATGGACGACTCTGAAGATCGTCATTCAGAGGAGTATGAAATGGATATGGAGACAAATCCAAGTGATTTTTTGGAAATGACCTCGATAGTTGCAGAAGAACCTGAAGAATCAGGATTGAAACATCAGGATGTTTCCAGTAATTTATCAGAGCATACATCTCAACAACATGAAGTTTATGTTTGTTCCTTGTGCAGCAAAGCATTTAGTTCAAAGGGTCATTTGTCCTTGCACGCACGCATTCACGTTGGTGCCGGTGACGTGATTGGTGAAAAAGTTCTTACGGATGATCATACATCATATAAAAGGCCCTATCAGTGTGATCTCTGTCATAAATCATACTCCACTGCAAAACATCGTTGGGGTCATGTATCTACAACTCATAGAGGCCATCCGGCAGTGACATGCAGTTATTGTTCCCGTATCTACTCAACCCGAACAAATTTGGAAGAACATATAAAATCACGTCATGCTGGTCTTCCAGCACCTACGGTTCCACTGAACAATACCTATCGGCCAGAAAATAGGTATCAATGCAATGCTTGTGGGAAGATTTGCACGGATGCTATGGAATTAAATCTTCATGGTAGGATTTGTACCGAAGGACAGAGATTAGATTTTTCAGGAAAAAACGAGATTAGTGATAATAAAGTTGTGGATAGTTCAGAAGCTTCAAGTATTGGAAGTGATGACGATGGCAAAGATTATAGAAGTGCGGAAGCTAAATTAGCGAAAAATCCTCAATTAACAATTTTAAAACAAGCATTAACGAAAGGAGATAGTCTTAAGCGAGATTTTGAAGACAAATTTACTACAAATTGCAAACCAAAAAAATTTCCGAAAACAGAGCATACTGACATTCAACATACTAAAAAATGGTATTGTGAATCGTGTCCGCAATGTTTTACTTCAGTTAATGATTTAAAAGAACACGAAGCAACTCACGATGCGGATAAGCCATTTATTTGTATTTTGTGTAAAAAAGACTTTTTTCTTAAATCTTCTTTAAGCAGGCATATTCAAACGTTACATGGTGTTGATCCATGTCCTATGGTGGAAAGTGATAAATGTCTAAAGAAAATTGTTTCACATAATTGGAATGAATCTATGGATCTCGATTTGTATGAGGGTAAAACCTCTTCTGAATTTCCATTGTCTCCAGATACAAATGCAGAAAATGAAGACGACCATGAGAGTGGACAAGAAAATCTCATTGAAATTGAAACTGTGTTTGTTTGTGAAATTTGTACTCGTGATTTTAATGACCGTGCATCTCTTTGGCTTCATATTCGTGCTACTCACAAAGAATTTGCAGCATTTGCATGTGGTGTTTGTTTAAAAATTTGTGCAGACAACACACAACTTTTGAACCATGTAAATATGTACCACGGCGGCTCGAAATTACTACTTTCTGAACAAAGAAGGTACAGTTGTACTATTTGTGGTAGGCAACATGATTCCAGAAAAAAATTAATTGCTCATGTATCCATACATAATGTGGATCCAAATTATGATCCTGCTACCTTTGTTCAGTTAAATAGTAATTATTATGGAGAGAACATTAACGGTAACGAAACTGCAGAACAAATGCTTGACTACGAAGAGGATAGCGATAAAGTGGACTGTTATATTTGTTATAAATCGTTTCCTAATGAAGATCATTTAATACGACATCAAAGAAATGCACACAGATCGGAACAACTAGTGCCAGCAGGAGATCCTTTAAATCCTTCGAGTTTAAATGGTGGTAGTAATAGAGCTCAATATCATCTTTTTTTCGTTTGTGAACTTTGTGGGAGTTCACATCCTAGTAAATGGGAACGTTGGCTACATGTTAGTTCGTCTCATAGCAATGAATTAGCTATAAAATGTGATCGTGAAGATTGCGGTAAAATTTTTGCTACAAAATCTCTCAGAAACGAACATATTCAGCATCACGCAATTCAAGGTTCATCCCCAAATACTTGTGAAATTTGTGGTAAACTTTGGGGTAGTAGAGTTGATTATTGGAAGCATGTTATGGGCGTTCATTCGGATACTGTTCCATTAATTTGTGGTGTCTGTTTAAAAGTGTTTCCAAATGTTTTGCAACTGAGTACTCATGTAAGATCGAAACATTGGCCGTTAACGAATGGTGACTTCAGCTGTGACATTTGTGGTAGACCATATTCGAATAAATCCAAAATGTCCAGACATAGAAAAATCCATGGTTTTGAGGAAAGCTGTGAAAATGGGGCTGAAAATAGCGAGAATAAAGTAGAGGGACGAATGAGGGAAACAGAATTAAGTTGCGAGCTTTGTGCAGATTTGAAGTTTACTAGTTTAGAAAAATTATGTAATCATAGACGAATCGTTCATGGACTTTTCCCTTGTGATCTCTGTAATAAATGCTATGGAAGAACTTCACATTTATGGAAACATGTAAACAGAGTTCACAAAGGTCATGAAGATGTAACTTGCCCTTATTGTATGAAAACTAGTGCTTCAAAAGATCATTTAGCAGCACACATTTCAAAAATTCATAGATACGAACCTGATTCCAGAAAAGATGCGAAAGATAATAGACAATTTAAAACCGAAGAAGTTAGTTTACATTATTGCGAAAAATGTAATAAAGGATTTCACAAGCGGTATCTATTGCGTAGACATATGAAAGGATGTCAGAATTACAGGAAAGACCCTGGAGCATTATTAACGAGATGCAGAGCTTGTGAAAGAATATTTAAAGATCGTGCCAGTTTACAAAAGCATATCGAGAATCATCATAGCACATACACGTGTCATCTTTGTAATGAAACAATTACCTCAAAATTAGGGATTATGACACATAACAGGGTGAAGCATATGGATCATCCAGATTTAACTTGCAATTTTGGATCTTGTAGGAAATTATTCAGAACTAAAGAAGATTTAGAAGCCCATAGAAAAGATCACAGATATCATACCACTCCTAACGTTTGTGATTTCTGCGGTGATACTGTTGAAAATAAACTGAAGTTAAAAATGCACGTTTTATCTCTTCATCGCAATGAAATTGGTGTATCTTGTGGAGTGTGTTTAATACCAATGAAAGATCCAAAAGAACTTAAAAGTCACGTAGAAGAAGTTCATTCCAGTGTTCTTTCAAGACCCAATACGTGTCAAGTTTGTGGGAAACAATATGCTTCAAAATGGAAAGCGTTTGATCATACTAAAAAATGCCATGGAAAAGTATTTAGGACTTGTAAACAATGTCTAGCTGTTTTCACTGAAGATTCTGCAATTAGAGATCATTATGAAACAATACATAATATTTCCAAAGATCAACTTGCAGCATTTGAACATAGATTAGATATTGGGTCGAAAAACGAAGATTTTGGAATAGAGTCTCCTGATATAATAGTGAAAGAAGAACCAGAGGATTTAGAATACGAAGTAGATATGTGTGATGAAGATTCTAGTGACTCAAAAAGGAGAAGATCCTTAACGGATACCTACGATTGTGAAATGTGTCCAGAAATGTTTGTAAACAGCGATGCACTTTCAAAACATTATCGTAACATGCACAATACTGATCCAGAAAGAATGTTTAAAAGATTAAAACAGGATGAACAGAGAAGAATGCGTGGTAAACTGAATTTCTCTTGCAAGAATTGTAGGCGACAATTTTGCACTAAAACATTATATTGGAACCATATTGCAACTTGCAGACGAAATATACGAAAAGGAGAGGAAAATTTATCTTTACGAAATGATATGTTAAGTAGCCAAGAAGAATTTTTGAAGAATAATAATCAAATTAAGAAAGAAGAGCCTACATCAGATTTAAATATTCCTGATTTCAATCTCTTTGAAGATATAAATCTTCAACTCTCTGGTCAGAGACCTCTTCCGAATCTTATGCCACTCACTCAGAGAGCGAAATCTTCAATAAAATGTTCAAGAAAGGATTCCAGGAAAGTTTATGATGAATCAACAAATACAGAATGTGCTTGTGAAGTGTGTGGAAAACAATGGCCAGCAAAGAAACATTTATGGCAACATTTAATTCGTTTCCATCGAGCGGAAGCAGCAGTCACTTGTGGAGTATGTTTAAAACTTTGTAAAGATTACGATGATTTGGCAGAACATTTGAAAGCTGCACACGAAGCGATATTGTCAACTGAAGGAAATAATTTTACATGTAAAATTTGCGGCAGGTATCACAATGCTCGTAGTAAATTGTTATTACACACAAGTATTCACATCGGCCATCCAGGTACTAGTACTTGGTGTCCAAAATGTCGGAAAAATATTACCGATGAAGCTGCACATTCGACTACGTGTAATACGAAGACGGAAGAAGGAGAACAAATGAAAAATAATGAAAAAGCAGAGGGAAGTCTAATAGCTGATGATGCGATAATTGAAGAAGTGGAAGAAGGGGATTTTGAATCTGAAGCAGAAGAAGAAGCAGATACAGAAGAATCAGAAAGTGGTAGTAGTACCGAAGCCGAAGAGGAACATGAATCAGAGGATGAATCTAGAGCAACTGGAGAAATTACTTACAATTCAGAGAGTGAGGATTCAGAAGAACTAGATAATTTAGAAATTGATGAAAAGAACATGGAGCATTATCCTTTAAAACATCTTCCAGAATCCAAAAATACAGAAACAAAGAAACACGATGCAAATTTATCAGATGATGATGGACCTCCTGTTCTCAGTCCCATGATGCCTCTGCTTCCTGAGAATATGTCTGTAGAACAGCCGATAAGTCATAAACTAGGCCCTATAGTGCCTCTAACTGAGAAAGACATGTGTGATTTATCAGAGATTCGAAATCGATCCTCCCCGAAATCTATGAATTTATATGAAAAATACTTACCTAACAATGAATCTTTAGAGTTGGGATCTGAAACATTTGCAAATCGAAGCGATGAAGATTTTGAGGATACGAAGAACGAATCTGATGAAAACTCCACTGAAGAGAATGAGGATAATGAGGAGATTGAGGAAAACGATGAAATAGAATTAAACGAAGATATAGAAGAACTTGGAGATAACGAGGAAATTGAGAAAAATGGGGACAGTGAACAGGTTGAAGATAATGAAGAGAATGAAGAAAACGGAGATATTGAAGAAATGGAAGAGAATGAAAGAAACGAAAGGATTGATGGGTCAGAAGAACACGAAGGAAACGAAGAAATTGAAGAGACAGACGAAGAAAATGAGGAGAGAGAGGAAAACATGCAATTGGATGATCTGGAAGGTGCTGTTCTAATGGTGACTGATGGGAATCAAATATTGATTCAGCAAGGAATAATAGAAGACGAGAATGAGAATTCAAATCAAGAATATATTTATTCTGCGCTTAGGTACAGTACAGAAGAGGACAGCGACGATGCAAGGAAATGA
Protein Sequence: MDIFGQEGKNRQLVDKIQACLPFKIAENDRLPKCLCYRCMYNLENFYDFRTACVNAVALLERCLSPSELNGDVTTILTCCNDSEFFEGQKSIPVLIPEAPIVNPNAALGTPPRLNSDGEADHETEEIDNSGTDEATIMDDSEDRHSEEYEMDMETNPSDFLEMTSIVAEEPEESGLKHQDVSSNLSEHTSQQHEVYVCSLCSKAFSSKGHLSLHARIHVGAGDVIGEKVLTDDHTSYKRPYQCDLCHKSYSTAKHRWGHVSTTHRGHPAVTCSYCSRIYSTRTNLEEHIKSRHAGLPAPTVPLNNTYRPENRYQCNACGKICTDAMELNLHGRICTEGQRLDFSGKNEISDNKVVDSSEASSIGSDDDGKDYRSAEAKLAKNPQLTILKQALTKGDSLKRDFEDKFTTNCKPKKFPKTEHTDIQHTKKWYCESCPQCFTSVNDLKEHEATHDADKPFICILCKKDFFLKSSLSRHIQTLHGVDPCPMVESDKCLKKIVSHNWNESMDLDLYEGKTSSEFPLSPDTNAENEDDHESGQENLIEIETVFVCEICTRDFNDRASLWLHIRATHKEFAAFACGVCLKICADNTQLLNHVNMYHGGSKLLLSEQRRYSCTICGRQHDSRKKLIAHVSIHNVDPNYDPATFVQLNSNYYGENINGNETAEQMLDYEEDSDKVDCYICYKSFPNEDHLIRHQRNAHRSEQLVPAGDPLNPSSLNGGSNRAQYHLFFVCELCGSSHPSKWERWLHVSSSHSNELAIKCDREDCGKIFATKSLRNEHIQHHAIQGSSPNTCEICGKLWGSRVDYWKHVMGVHSDTVPLICGVCLKVFPNVLQLSTHVRSKHWPLTNGDFSCDICGRPYSNKSKMSRHRKIHGFEESCENGAENSENKVEGRMRETELSCELCADLKFTSLEKLCNHRRIVHGLFPCDLCNKCYGRTSHLWKHVNRVHKGHEDVTCPYCMKTSASKDHLAAHISKIHRYEPDSRKDAKDNRQFKTEEVSLHYCEKCNKGFHKRYLLRRHMKGCQNYRKDPGALLTRCRACERIFKDRASLQKHIENHHSTYTCHLCNETITSKLGIMTHNRVKHMDHPDLTCNFGSCRKLFRTKEDLEAHRKDHRYHTTPNVCDFCGDTVENKLKLKMHVLSLHRNEIGVSCGVCLIPMKDPKELKSHVEEVHSSVLSRPNTCQVCGKQYASKWKAFDHTKKCHGKVFRTCKQCLAVFTEDSAIRDHYETIHNISKDQLAAFEHRLDIGSKNEDFGIESPDIIVKEEPEDLEYEVDMCDEDSSDSKRRRSLTDTYDCEMCPEMFVNSDALSKHYRNMHNTDPERMFKRLKQDEQRRMRGKLNFSCKNCRRQFCTKTLYWNHIATCRRNIRKGEENLSLRNDMLSSQEEFLKNNNQIKKEEPTSDLNIPDFNLFEDINLQLSGQRPLPNLMPLTQRAKSSIKCSRKDSRKVYDESTNTECACEVCGKQWPAKKHLWQHLIRFHRAEAAVTCGVCLKLCKDYDDLAEHLKAAHEAILSTEGNNFTCKICGRYHNARSKLLLHTSIHIGHPGTSTWCPKCRKNITDEAAHSTTCNTKTEEGEQMKNNEKAEGSLIADDAIIEEVEEGDFESEAEEEADTEESESGSSTEAEEEHESEDESRATGEITYNSESEDSEELDNLEIDEKNMEHYPLKHLPESKNTETKKHDANLSDDDGPPVLSPMMPLLPENMSVEQPISHKLGPIVPLTEKDMCDLSEIRNRSSPKSMNLYEKYLPNNESLELGSETFANRSDEDFEDTKNESDENSTEENEDNEEIEENDEIELNEDIEELGDNEEIEKNGDSEQVEDNEENEENGDIEEMEENERNERIDGSEEHEGNEEIEETDEENEEREENMQLDDLEGAVLMVTDGNQILIQQGIIEDENENSNQEYIYSALRYSTEEDSDDARK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00218574;
90% Identity: iTF_00233377;
80% Identity: -