Bbre013996.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Bombus breviceps
Gene Symbol
-
Assembly
GCA_014825925.1
Location
CM026183.1:564193-574379[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 30 1.5e-05 0.0011 19.1 0.9 1 23 217 239 217 239 0.98
2 30 0.0085 0.63 10.4 3.7 1 23 262 285 262 285 0.96
3 30 0.00013 0.0094 16.2 0.5 2 23 292 314 291 314 0.96
4 30 0.0052 0.38 11.1 0.1 1 21 335 355 335 356 0.95
5 30 0.0054 0.4 11.1 0.6 2 23 452 473 451 473 0.96
6 30 0.014 1 9.8 1.2 2 23 480 502 479 502 0.91
7 30 0.00011 0.0082 16.4 0.1 1 23 569 592 569 592 0.96
8 30 0.022 1.6 9.1 0.4 1 23 598 621 598 621 0.96
9 30 0.058 4.3 7.8 0.8 1 23 634 656 634 656 0.97
10 30 3.3e-05 0.0025 18.0 0.9 3 23 700 721 699 721 0.96
11 30 0.0012 0.088 13.1 0.9 2 23 781 804 780 804 0.95
12 30 2.9 2.2e+02 2.5 0.0 2 23 813 835 813 835 0.84
13 30 0.037 2.7 8.4 0.1 2 23 842 864 841 864 0.95
14 30 1.2e-05 0.0009 19.4 1.2 1 23 872 894 872 894 0.98
15 30 0.95 70 4.0 0.8 3 23 922 944 920 944 0.83
16 30 0.0002 0.015 15.6 3.3 1 23 947 970 947 970 0.97
17 30 0.002 0.15 12.4 0.4 2 23 977 999 976 999 0.96
18 30 0.00086 0.064 13.6 3.9 1 21 1023 1043 1023 1044 0.95
19 30 0.0025 0.19 12.1 1.8 2 23 1058 1079 1057 1080 0.93
20 30 0.41 31 5.1 1.4 1 23 1083 1106 1083 1106 0.94
21 30 0.013 0.95 9.9 0.9 2 23 1113 1136 1112 1136 0.92
22 30 2.9 2.1e+02 2.5 0.2 2 23 1144 1166 1144 1166 0.94
23 30 8.8 6.5e+02 1.0 0.0 2 23 1173 1195 1172 1195 0.88
24 30 0.21 16 6.0 2.7 2 23 1204 1226 1204 1226 0.96
25 30 1.6 1.2e+02 3.3 0.1 2 23 1232 1254 1232 1254 0.95
26 30 6.6e-05 0.0049 17.1 0.2 1 23 1317 1340 1317 1340 0.96
27 30 0.016 1.2 9.6 3.0 1 21 1365 1385 1365 1386 0.94
28 30 0.47 34 5.0 1.3 2 23 1482 1504 1481 1504 0.94
29 30 0.27 20 5.7 0.2 2 23 1511 1533 1510 1533 0.94
30 30 1.1 83 3.8 1.9 1 23 1544 1566 1544 1566 0.92

Sequence Information

Coding Sequence
ATGGAGTCCAGGGAACGCTACCAGGAGCTCTGTAGACTATGCGCATCCTACGACGCCGTCAAGATGGACATCTTCGGTCAAGAGGGCAAGAACAGACAGCTCGTTGACAAGATACAAGCTTGTCTGCCGTTTAAGattGCAGAAAATGATCGACTACCAAAATGCCTCTGTTATCGGTGTATGtacaatttggaaaatttctatgattttagAACAGCATGTGTTAATGCAGTGGCTCTCTTGGAAAGGTGTTTATCACCTTCAGAAtcgAATGGAGATGTTACAACCATCTTGACGTGCTGTAATGATTCAGAGTTTTTCGAAGGACAGAAAAGTATACCAGTGTTAATTCCAGAAGCTCCTATCGTAAATCCAAATGCTGCTTTAGGCACACCACCCAGATTGAATTCTGATGGAGAGGCTGATCATGAGACAGAAGAAATTGATAACAGTGGGACAGACGAAGcAACAGTCATGGACGACTTTGAAGATCGTCATTCAGAGGAATATGAAATGGATATGGAGACAAATCCAAGTGATTTTTTGGAAATGACCTCGATAGTTGCAGAAGAACCTGAAGAATCAGGATTGAAACATCAGGATGTTTCCAGTAACTTATCAGAGCATACATCTCAACAACATGAAGTTTATGTTTGTTCCTTGTGCAGCAAAGCATTTAGTTCAAAGGGTCATTTGTCCTTGCACGCACGCATTCATGTTGGTGCCGGTGACGTGATTGGTGAAAAAGTTCTTACGGATGATCATACATCATATAAAAGGCCCTATCAGTGTGATCTTTGTCATAAATCATACTCCACTGCAAAACATCGTTGGGGTCATGTATCTACAACTCATAGAGGCCATCCGGCAGTGACATGCGGTTATTGTTCCCGTATCTACTCAACCCGAACAAATTTGGAAGAACATATAAAATCACGTCATGCTGGTCTTCCAGCACCTACGGAGGTTCCACTGAATAATACCTATCGGCCAGAAAATAGATATCAATGCAATGCTTGTGGGAAGATTTGCACGGATGCTATGGAATTGAATCTTCATGGTAGGATTTGTACTGAAGGACAGAGATTAGATCTTTCAGGAAAAAACGAGATTAGTGATAATAAAGTTGTGGATAGTTCAGAAGCTTCAAGTATTGGAAGTGATGACGATGGCAAAGATTATAGaAGTGCGGAAGCTAAATTAGCGAAAAATCCtcaattaacaattttaaaacaagCATTAACGAAAGGAGATAGTCTTAAGCGAGATTTTGAAGACAAATTTACTACAAATTGCAAACCAAAAAAATTTCCGAAAACAGAGCATACTGACTTTCAACATACTAAGAAATGGTATTGTGAATCGTGTCCGCAATGTTTTACTTCAGTTAATGATTTAAAAGAACACGAAGCAACTCACGATGCGGATAAGccatttatttgtattttgtgtaaaaaagacttttttcttaaatcttcTTTAAGCAGGCATATTCAAACGTTACATGGTGTTGATCCATGTCCTATGGTGGAAAGTGATAAATGtctaaagaaaattgtttcacatAATTGGAACGAATCTATGGATCTCGATTCGTATGAGGGTAAAACCTCTTCTGAATTTCCATTGTCTCCAGATaCAAATGCAGAAAATGAAGACGACCATGAGAGTGGACAAGAAAATCTCATCGAAATTGAAACTGTGTTTGTTTGTGAAATTTGTACTCGTGATTTTAATGACCGTGCATCTCTTTGGCTTCATATTCGTGCTACTCACAAAGAATTTGCAGCATTTGCATGTGgtgtttgtttaaaaatttgtgcAGACAACACACAACTTTTGAACCACGTAAATATGTACCACGGCGGCTCGAAATTACTACTTTCTGAACAAAGAAGGTACAGTTGTACTATTTGTGGTAGGCAACATGATTccagaaaaaaattaattgctcaTGTATCCATACATAATGTGGATCCAAATTATGATCCTGCTACCTTTGTTCaattaaatagtaattattatgGAGAGAATATTAACGGTAACGAAACTGCAGAACAAATTCTTGACTACGAAGAGGATAGCGATAAAGTGGActgttatatttgttataaatcgTTTCCTAATGAAGATCATTTAATACGACATCAAAGAAATGCACACAGATCGGAACAACTAGTGCCAGCAGGAGATCCTTTAAATCCTTCGAGTTTAAATGGTGGTGGTAATAGAGCTCAATATCATCTCTTTTTCGTTTGTGAACTTTGTGGGAGTTCACATCCTAGTAAATGGGAACGTTGGCTACATGTTAGTTCATCTCATAGCAATGAATCAGCCATAAAATGTGATCGTGAAGATTGCGGTAAAATTTTTGCTACAAAATCTCTCAGAAACGAACATATTCAGCATCATGCAATTCAAGGTTCATCCCCAAATACTTGTGAAATTTGTGGTAAACTTTGGGGTAGTAGAGTTGATTATTGGAAGCATGTTATGGGTGTTCATTCGGATACTGTTCCATTAATCTGTGGTGTCTGTTTAAAAGTGTTTCCAAATGTTTTGCAACTGAGTACTCATGTAAGATCGAAACATTGGCCGTTAACGAATGGTGACTTTAGCTGTGACATTTGTGGTAGACCATACTCGAATAAATCCAAAATGTCCAGACATAGAAAAATCCATGGTTTTGAAGAAAGCTGTGAAAATGGGGCTGAAAATAGCGAGAATAAAGTAGAGGGACGAATGAGGGAAACAGAATTAAGTTGCGAGCTTTGTGCAGATTTGAAGTTTACtagtttagaaaaattatgtaatcaTAGACGAATCGTTCATGGACTTTTCCCTTGCGATCTCTGTAATAAATGCTATGGAAGAACTTCACATTTATGGAAACATGTAAACAGAGTTCACAAAGGTCATGAAGATGTAACTTGCCCTTATTGTATGAAAACTAGTGCTTCAAAAGATCATTTAGCAGCAcacatttcaaaaattcatagaTACGAACCTGATTCCAGAAAAGATGGGAAAGATAATAGACAATTTAAAACCGAAGAAGTTAGTTTACATTATTgcgaaaaatgtaataaaggATTTCACAAGCGGTATTTATTGCGTAGACATATGAAAGGATGTCAGAATTACAGGAAAGATCCTGGAGCATTATTAACGAGATGCAGAGCTtgtgaaagaatatttaaagatcgTGCCAGTTTACAAAAGCATATCGAGAATCATCATAGTACATACACATGTCATCTTTGTAATGAAACAATTACCTCAAAATTAGGGATTATGACACATAACAGGGTGAAACACATGGATCATCCAGATTTAACTTGCAATTTTGGATCTTGTAGGAAATTATTCAGAACTAAAGAAGATTTAGAAGCCCATAGAAAAGATCACAGatATCATACCACTCCTAACGTTTGTGATTTCTGCGGTGATACTGTTGAAAATAAACTGAAGTTAAAAATGCACGTTTTATCTCTTCATCGCAATGAAATTGGTGTATCTTGTGGAGTGTGTTTAATACCAATGAAAGATCCAAAAGAACTTAAAAGTCACGTAGAAGAAGTTCATTCCAGTGTTCTTTCAAGACCCAATACGTGTCAAGTTTGTGGGAAACAATATGCTTCAAAATGGAAAGCGTTTGATCATACTAAAAAATGCCATGGAAAAGTATTTAGGACTTGTAAACAATGTCTAGCTGTTTTCACTGAAGATTCTGCAATTAGAGATCATTATGAAACAATACATAATATTCCCAAAGATCAACTTGCAGCATTTGAACATAGATTAGATATTGGGTCGAAAAATGAAGATTTTGGAATAGAGTCTCCTGATATAATAGTGAAAGAAGAACCAGAGGATTTAGAATACGAAGTAGATATGTGTGATGAAGATTCTAGTGACTCAAAAAGGAGAAGGTCCTTAACGGATACCTATGATTGTGAGATGTGTCCAGAAATGTTTATAAACAGCGATGCACTTTCAAAACATTATCGTAACATGCATAATACTGATCCagaaagaatgtttaaaagattaaaacagGATGAACAGAGAAGAATGCGTGGTAAACTGAATTTCTCTTGCAAGAATTGTAGGCGACAATTTTGCACTAAAACATTATATTGGAACCATATTGCAACTTGCAGACGGAATATACGAAAAGGAgaggaaaatttatctttacgAAATGACATGATAAGTAGCCAAGAAGAATTTTTGAagaataataatcaaattaagAAAGAAGAGCCTACAtcagatttaaatattcctgATTTCAATCTCTTTGAAGATATAAATCTTCAACTCTCTGGTCAGAGACCTCTCCCGAATCTTATGCCACTCACTCAGAgAGCGAAATCTTCAATAAAATGTTCAAGAAAGGATTCCAGGAAAGTTTATGATGAATCAACAAATACAGAATGTGCTTGTGAAGTGTGTGGAAAACAATGGCCAGCAAAGAAACATTTATGGCAACATTTAATTCGTTTCCATCGAGCGGAAGCAGCAGTCACTTGTGGAGTATGTTTAAAACTTTGTAAAGATTATGATGATTTGGCAGAACATTTGAAAGCTGCACACGAAGCAATATTGTCAACtgaaggaaataattttacatgtaAAATTTGCGGCAGGTATCACAATGCTCGTAGTAAATTGTTATTACACACAAGTATTCACATCGGCCATCCAGGTACTAGTACTTGGTGTCCAAAATGTCGGAAAAATATTACCGATGAAGCTGCACATTCGACTACGTGTAATACGAAGACGGAAGAAGgagaacaaatgaaaaataatgaaaaagcaGAGGGAAGTCTAATAGCTGATGATGCGATAATAGAAGAAGTGGAAGAAGGGGATTTTGAATCtgaagcagaagaagaagcagataCAGAAGAATCAGAAAGTGGTAGTAGTACCGAAGCTGAAGAGGAACATGAATCAGAGGATGAATCTAGAGCAACTGGAGAAATTACTTACAATTCAGAGAGTGAGGATTCAGAAGAACtagataatttagaaattgatGAAAAGAACATGGAGCATTATTCTTTGAAACATCTTTCAGAATCCAAAAATACAGaaacaaagaaacacgATGCAAATTTATCGGATGATGATGGACCTCCTGTTCTCAGTCCCATGATGCCTCTGCTTCCTGAGAATATGTCTGTAGAACAGTCGATAAGTCATAAACTAGGCCCGATAGTGCCTCTAACTGAGAAAAACATGTGCGATTTATCAGAGATTCGAAATCGATCCTCCCCGAAATCtatgaatttatatgaaaaacaCTTACCTAACAATGAATCTTTAGAGTTGGGATCTGAAACATTTGCAAATCGAAGCGATGAAGATTTCGAGGATACGAAGAACGAATCTGATGAAAACTCCActgaagaaaatgaagaagagaATGAGGATAATGAAGAGATTGAGGAAAACGATGAGATAGAATTAAAGGAAGATATAGAAGAACCTGGAGATAATgaggaaattgagaaaaatggGGATAGTGAACAGGTTGAAGATAATGAAGAGAATGAAGAAAACGGAGATattgaagaaatggaagagaatgaaagaaacgaagggaTTGATGGGTCAGAAGAAcacgaaggaaacgaagaaattgaagaaacagacgaagaaaatgaggagagagaggaaaaCATGCAATTGGATGATCTGGAAGGTGCTGTTCTAATGGTGACTGATGGGAATCAAATATTGATTCGGCAAGGAATAATAGAAGACGAGAATGAGAATTCAAATCAAGAATATGTCTATTCTGCGCTTAGGTACAGTACAGAAGAGGACAGCGACGATGCAAGGAAATGA
Protein Sequence
MESRERYQELCRLCASYDAVKMDIFGQEGKNRQLVDKIQACLPFKIAENDRLPKCLCYRCMYNLENFYDFRTACVNAVALLERCLSPSESNGDVTTILTCCNDSEFFEGQKSIPVLIPEAPIVNPNAALGTPPRLNSDGEADHETEEIDNSGTDEATVMDDFEDRHSEEYEMDMETNPSDFLEMTSIVAEEPEESGLKHQDVSSNLSEHTSQQHEVYVCSLCSKAFSSKGHLSLHARIHVGAGDVIGEKVLTDDHTSYKRPYQCDLCHKSYSTAKHRWGHVSTTHRGHPAVTCGYCSRIYSTRTNLEEHIKSRHAGLPAPTEVPLNNTYRPENRYQCNACGKICTDAMELNLHGRICTEGQRLDLSGKNEISDNKVVDSSEASSIGSDDDGKDYRSAEAKLAKNPQLTILKQALTKGDSLKRDFEDKFTTNCKPKKFPKTEHTDFQHTKKWYCESCPQCFTSVNDLKEHEATHDADKPFICILCKKDFFLKSSLSRHIQTLHGVDPCPMVESDKCLKKIVSHNWNESMDLDSYEGKTSSEFPLSPDTNAENEDDHESGQENLIEIETVFVCEICTRDFNDRASLWLHIRATHKEFAAFACGVCLKICADNTQLLNHVNMYHGGSKLLLSEQRRYSCTICGRQHDSRKKLIAHVSIHNVDPNYDPATFVQLNSNYYGENINGNETAEQILDYEEDSDKVDCYICYKSFPNEDHLIRHQRNAHRSEQLVPAGDPLNPSSLNGGGNRAQYHLFFVCELCGSSHPSKWERWLHVSSSHSNESAIKCDREDCGKIFATKSLRNEHIQHHAIQGSSPNTCEICGKLWGSRVDYWKHVMGVHSDTVPLICGVCLKVFPNVLQLSTHVRSKHWPLTNGDFSCDICGRPYSNKSKMSRHRKIHGFEESCENGAENSENKVEGRMRETELSCELCADLKFTSLEKLCNHRRIVHGLFPCDLCNKCYGRTSHLWKHVNRVHKGHEDVTCPYCMKTSASKDHLAAHISKIHRYEPDSRKDGKDNRQFKTEEVSLHYCEKCNKGFHKRYLLRRHMKGCQNYRKDPGALLTRCRACERIFKDRASLQKHIENHHSTYTCHLCNETITSKLGIMTHNRVKHMDHPDLTCNFGSCRKLFRTKEDLEAHRKDHRYHTTPNVCDFCGDTVENKLKLKMHVLSLHRNEIGVSCGVCLIPMKDPKELKSHVEEVHSSVLSRPNTCQVCGKQYASKWKAFDHTKKCHGKVFRTCKQCLAVFTEDSAIRDHYETIHNIPKDQLAAFEHRLDIGSKNEDFGIESPDIIVKEEPEDLEYEVDMCDEDSSDSKRRRSLTDTYDCEMCPEMFINSDALSKHYRNMHNTDPERMFKRLKQDEQRRMRGKLNFSCKNCRRQFCTKTLYWNHIATCRRNIRKGEENLSLRNDMISSQEEFLKNNNQIKKEEPTSDLNIPDFNLFEDINLQLSGQRPLPNLMPLTQRAKSSIKCSRKDSRKVYDESTNTECACEVCGKQWPAKKHLWQHLIRFHRAEAAVTCGVCLKLCKDYDDLAEHLKAAHEAILSTEGNNFTCKICGRYHNARSKLLLHTSIHIGHPGTSTWCPKCRKNITDEAAHSTTCNTKTEEGEQMKNNEKAEGSLIADDAIIEEVEEGDFESEAEEEADTEESESGSSTEAEEEHESEDESRATGEITYNSESEDSEELDNLEIDEKNMEHYSLKHLSESKNTETKKHDANLSDDDGPPVLSPMMPLLPENMSVEQSISHKLGPIVPLTEKNMCDLSEIRNRSSPKSMNLYEKHLPNNESLELGSETFANRSDEDFEDTKNESDENSTEENEEENEDNEEIEENDEIELKEDIEEPGDNEEIEKNGDSEQVEDNEENEENGDIEEMEENERNEGIDGSEEHEGNEEIEETDEENEEREENMQLDDLEGAVLMVTDGNQILIRQGIIEDENENSNQEYVYSALRYSTEEDSDDARK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00218574;
90% Identity
iTF_00233377;
80% Identity
-