Basic Information

Insect: Colletes collaris
Gene Symbol: -
Assembly: GCA_030068185.1
Location: JASGYR010000370.1:5092467-5100995[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 29 7.5e-06 0.00089 20.4 1.0 1 23 218 240 218 240 0.98

2 29 0.011 1.3 10.4 3.7 1 23 263 286 263 286 0.96

3 29 0.00016 0.019 16.2 0.5 2 23 293 315 292 315 0.96

4 29 0.13 16 7.0 0.9 2 21 337 356 336 357 0.92

5 29 0.04 4.8 8.6 0.0 2 23 453 474 452 474 0.94

6 29 0.0027 0.33 12.3 0.6 1 23 480 503 480 503 0.94

7 29 0.00014 0.017 16.3 0.1 1 23 570 593 570 593 0.96

8 29 0.028 3.4 9.1 0.4 1 23 599 622 599 622 0.96

9 29 0.074 8.9 7.8 0.8 1 23 635 657 635 657 0.97

10 29 4.3e-05 0.0051 18.0 0.9 3 23 698 719 697 719 0.96

11 29 0.0016 0.19 13.1 1.0 2 23 779 802 778 802 0.95

12 29 3.7 4.5e+02 2.4 0.0 2 23 811 833 811 833 0.84

13 29 0.1 12 7.3 0.1 2 23 840 862 839 862 0.95

14 29 1.6e-05 0.0019 19.4 1.2 1 23 870 892 870 892 0.98

15 29 1.3 1.6e+02 3.9 0.8 8 23 926 942 918 942 0.83

16 29 0.00025 0.03 15.6 3.3 1 23 945 968 945 968 0.97

17 29 0.0005 0.06 14.6 0.3 2 23 975 997 974 997 0.96

18 29 0.0011 0.13 13.6 3.9 1 21 1021 1041 1021 1042 0.95

19 29 0.0032 0.39 12.1 1.8 2 23 1056 1077 1055 1078 0.93

20 29 0.53 63 5.1 1.4 1 23 1081 1104 1081 1104 0.94

21 29 0.0034 0.41 12.0 0.6 2 23 1111 1134 1110 1134 0.94

22 29 3.6 4.4e+02 2.5 0.2 2 23 1142 1164 1142 1164 0.94

23 29 0.27 32 6.0 2.7 2 23 1202 1224 1202 1224 0.96

24 29 3.7 4.4e+02 2.4 0.1 2 23 1230 1252 1230 1252 0.94

25 29 0.00011 0.013 16.7 0.2 1 23 1315 1338 1315 1338 0.96

26 29 0.021 2.5 9.5 2.5 1 21 1363 1383 1363 1384 0.93

27 29 0.59 71 4.9 1.3 2 23 1481 1503 1480 1503 0.94

28 29 0.38 46 5.5 0.3 2 23 1510 1532 1509 1532 0.94

29 29 5.7 6.8e+02 1.9 2.6 1 23 1543 1565 1543 1565 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	29	7.5e-06	0.00089	20.4	1.0	1	23	218	240	218	240	0.98
2	29	0.011	1.3	10.4	3.7	1	23	263	286	263	286	0.96
3	29	0.00016	0.019	16.2	0.5	2	23	293	315	292	315	0.96
4	29	0.13	16	7.0	0.9	2	21	337	356	336	357	0.92
5	29	0.04	4.8	8.6	0.0	2	23	453	474	452	474	0.94
6	29	0.0027	0.33	12.3	0.6	1	23	480	503	480	503	0.94
7	29	0.00014	0.017	16.3	0.1	1	23	570	593	570	593	0.96
8	29	0.028	3.4	9.1	0.4	1	23	599	622	599	622	0.96
9	29	0.074	8.9	7.8	0.8	1	23	635	657	635	657	0.97
10	29	4.3e-05	0.0051	18.0	0.9	3	23	698	719	697	719	0.96
11	29	0.0016	0.19	13.1	1.0	2	23	779	802	778	802	0.95
12	29	3.7	4.5e+02	2.4	0.0	2	23	811	833	811	833	0.84
13	29	0.1	12	7.3	0.1	2	23	840	862	839	862	0.95
14	29	1.6e-05	0.0019	19.4	1.2	1	23	870	892	870	892	0.98
15	29	1.3	1.6e+02	3.9	0.8	8	23	926	942	918	942	0.83
16	29	0.00025	0.03	15.6	3.3	1	23	945	968	945	968	0.97
17	29	0.0005	0.06	14.6	0.3	2	23	975	997	974	997	0.96
18	29	0.0011	0.13	13.6	3.9	1	21	1021	1041	1021	1042	0.95
19	29	0.0032	0.39	12.1	1.8	2	23	1056	1077	1055	1078	0.93
20	29	0.53	63	5.1	1.4	1	23	1081	1104	1081	1104	0.94
21	29	0.0034	0.41	12.0	0.6	2	23	1111	1134	1110	1134	0.94
22	29	3.6	4.4e+02	2.5	0.2	2	23	1142	1164	1142	1164	0.94
23	29	0.27	32	6.0	2.7	2	23	1202	1224	1202	1224	0.96
24	29	3.7	4.4e+02	2.4	0.1	2	23	1230	1252	1230	1252	0.94
25	29	0.00011	0.013	16.7	0.2	1	23	1315	1338	1315	1338	0.96
26	29	0.021	2.5	9.5	2.5	1	21	1363	1383	1363	1384	0.93
27	29	0.59	71	4.9	1.3	2	23	1481	1503	1480	1503	0.94
28	29	0.38	46	5.5	0.3	2	23	1510	1532	1509	1532	0.94
29	29	5.7	6.8e+02	1.9	2.6	1	23	1543	1565	1543	1565	0.92

Sequence Information

Coding Sequence: ATGGAGCCCAGGGAACGCTATCAGGAGCTCTGCAGACTTTGCGCATCCTACGACGCCGTCAAGATGGACATCTTCGGTCAAGAGGGCAAGAATAGACAGCTCGTTGACAAAATTCAAGCCTGTCTGCCGTTTCAGatTGCAGAAGATGATCGTCTACCAAAATGCCTCTGTTACCGGTGCATGTACAATTTGGAAAATTTCTATGATTTTAGAACAGCATGTGTCAATGCAGTGGCCCTCTTGGAAAGATGTTTACCACCCTCAGAATTGGTTGGAGGTGTTGCGACCACCCTAACATGTGGCAATGATTTACAGCTGTCAAAGAGAAAGGAAAGTATACCAATGTTGATTCCAGAGGCTCCTATTGTCAATCCAAATGCTGCCTTAGGCACACCGCCTAGATTAAATTTCGACGAGGAGGCTGATCATGAGGCAGAAGACATTGTTGACAACAGTGGCACGGATGAAGCAACGCTGGTAGATGATTCTGAGGATCGCCGTTCAGAGGAGTATGAAATGGATATGGAAACAAATCCGAGTGATTTTTTGGAAATGACTTCGATAGTTACGGAAGAACCCGCAGAATCAGAGTCGCGACATCAAGAACTTTCTAACAGCTTGCCGGAGCATGCATCTCAACAACATGAAGTTTACGTTTGTTCTTTGTGTAACAAAGCATTCAGTTCAAAGGGCCATTTATCTCTGCATGCGCGCATTCACGTTGGGGCTGGCGATGTGATCGGTGAAAAAGTTCTTACAGACGATCATACTTCCTACAAGAGACCCTATCAGTGTGATCTTTGTCACAAATCTTATTCAACTGCAAAGCATCGTTGGGGCCATGTTTCAACGACTCATAGAGGCCACCCGGCAGTGACATGCGGTTATTGTTCCCGGATCTACTCGACCCGTACAAATTTGGAAGAACATATAAAATCACGTCATGCTGGTCTTCCAGCGCCCACGGAGGTTCCAGTGAACAATTCCTATCGTCCGGAAAATAGATGTCAGTGCAATGCTTGCGGAAAGATTTGCACGGATACTATGGAATTGAATCTTCATGGAAGGATCTGCGTTGAAGAACGGAGATTAGATCATTTGGGGAAAAATGAGAGTAGAGATAATAAAATCGTGGATAGTTCCGAAGCGTCGAGTATTGGTAGCGACGAGGACAGCAAAGATTATAGGAGCGTAGAAGCAAAGCTAGCTAAAAATCCTCAATTGACGATCTTGAAACAAGCATTAACGAAAGGAGACAGCCTTAAACGTGATTTCGAGGACAAGTTCACAACGAATTGCAAACCAAAAAAGCTACCAAAAACAGAAAATACAGACATGAGAAACGACAAAAAATGGTACTGTGAAACCTGTCCTCAACTTTTCACGTCAGTTGATGATCTGAAAGAGCACGAAGCGATACACAACACAGATAAGCCATTTGTCTGTATTCTCTGTAAAAAAGATTTTGCTCTCAAGTCTTCCTTAAGCAGACACATTCAAACTTTGCACGGCGTTGACCCGTGCCCTATCATAGAAAGCGACAAGTGTTTGAAAAAGATCGTTTCACGGAATTGGAACGAATCTATGGATCTCGATTTCGAGGGCAAAGCTTCTTCCGAGTTTCCATTATCCCCGGAGATAAACGCTGAAAATGAGGAAGAGGATCGCGAGAGCGGGCAAGAGAACCTCATTGAAATTGAAACGGTATTCGTTTGCGAGATCTGTACCCGTGATTTCAATGACCGCGCGTCTCTTTGGCTTCACATTCGAGCCACTCACAAAGAATTTGCAGCGTTCGCGTGCGGTGTTTGTTTGAAGATCTGTGCGGACAATACGCAACTTCTGAATCACGTGAACATGTATCACGGTGGTTCGAAATTGTTACTTTCCGAGCAGAGAAGGTACAGCTGTACGATTTGCGGTAGACAGCACGACTCTAGAAAGAAGTTAATCGCACACGTATCTATACATAACGTAGATCCAAATTACGACCCTGCAACCTTCGTCCAGTTGAATAGCAATTACTACGGGGAAAATATAAACGGTAATGAGCATATACTTGATTACGAAGAAGACGGAGATAAAGTAGATTGTTACATTTGTTATAAATCATTTCCCAACGAGGATCATTTGATACGGCATCAAAGAAATGCACACAGGTCTGAACAGCTAATGTCCACAGGGGACTCTTTAAATCCATCCAATTTAAATGGCGGTGGAAACAGAGCTCAGTATCATCTTTTCTTTGTCTGTGAACTTTGTGGTAGCTCGCATCCCAGTAAATGGGAACGTTGGTTACACGTCAGCTCTTCCCACTGCAACGAGCCAGCTATAAAATGCGACCGCGAAGATTGCGGTAAAATCTTTGCGACGAAGTCGCTTAGAAACGATCACATTCAGCATCATGCGATTCAGGGCTCGTCTCCGAATACTTGCGAGATTTGTGGTAAACTTTGGGGCAGCAGAGTCGATTACTGGAAGCACGTTATGGGTGTTCATTCGGACACGGTTCCGTTGATATGTGGCGTGTGCCTGAAAGTGTTCCCGAACGTGTTACAATTAAGTACTCACGTGAAATCGAAACATTGGCCGTTGACGAACGGCGATTTCAGTTGCGATATATGCGGAAGGCCGTACTCGAACAAATCGAAAATGTCCAGACATAGAAAAATTCACGGTTTCGAGGAAGCTTGCAACAACGGAATGGAAAACAACGATCATAAAGCAGATGGACGGATCAGGGAGACAGAATTAAATTGCGAGCTCTGTGCGGATTTGAAATTCACTAGTTTAGAGAAATTATGTAATCATAGACGAATCGTTCATGGACTTTTCCCTTGCGATCTCTGTAATAAATGCTACGGGAGAACATCACACTTATGGAAACACGTAAATAGGGTTCATAAAGGTCACGAGGATGTGACGTGTCCTTACTGCTTGAAAACTAGCGCTTCGAAGGATCACTTGGCCGCtcatatttcaaaaattcataGATACGAACCTGATTCCAGAAAAGATGGGAAAAATAATAGGCAATTTAAAACCGAGGAAGTCAGTTTACATTATTGCGAAAAATGTAATAAGGGATTTCATAAACGGTACCTTTTGCGTAGACATATGAAAGGATGTCAGAATTATAGAAAAGATCCTGGAGCATTACTGACAAGATGCAGAGCCTGCGAAAGAATATTCAAGGATCGTGCCAGTTTACAAAAGCATATTGAGAATCACCATAGTACATATACATGTCATCTTTGCAATGAAACCATCACCTCAAAATTGGGCATCATGACACACAATAGAGTGAAACATATGGATCATCCGGATTTAACTTGTAATTTTGGAGTTTGTAGAAAGTTGTTCAGAACAAAGGAAGATTTAGAAGCCCACAGGAAAGATCACAGGTATCATACGAACCCCAATGTCTGTGACTTTTGTGGCGACACGGTTGAGAATAAACTGAAATTAAAGATGCACGTGTTGTCGCTTCACCGTAATGAAATTGGCGTTTCTTGCGGAGTATGTTTGATCCCGATGAAGGATCCCAAAGAGCTTAAAAGTCATGTGGAGGAAGTTCATTCCAGTGTTCTTTCAAGACCAAACACCTGTCAGGTCTGTGGGAAACAATATGCTTCAAAATGGAAAGCTTTTGATCATACTAAAAAATGTCACGGGAAAGTATTCCGGACTTGTAAGCAGTGTTTAGCTGTTTTTACGGAAGATTCCGCTATTAGAGATCATTATGAAATGGTACATAACGTTCCAAAAGATCAGCTTGCTGCGTTTGAATATAGATTGGACATTGGATCGAAGAACGAAGATTTTGAAATGGAATCTCCTGACATTATTGTCAAAGAGGAGCCAGATGATCTAGAGTACGATGTAGATCTTTGCGACGAGGATTCCAGTGATTCAAAACGGAGAAGATCTTTAACAGACACCTTTGATTGCGAAATGTGTCCGGAAATGTTTATAAACAGTGACGCCCTTTCGAAACACTATCGTAATATGCACAATACTGATCCAGAAAGAATGTTCAAGAGATTAAAGCAAGAGGAACAGAGAAGGATGCGAGGAAAAATGAGTTTTGTTTGCAAGAATTGTAAGAGACAATTCTGTACGAAAACACTGTATTGGAGCCATGTGGCGACTTGCAGAAGAAATATTTTGCGAAAAGAAgTAGAACTTTTGCCTCTGCGAAATGATATTTTGGATAATCGGgaagaaattttgaaaaataataatcaGATTAAAAAGGAAGAACCTACGTCGAATTTGAATATTCCTGACTTCAATCTTTTCGAAGATATAAATCTTCAGTTGTCAGGTCAGAGACCACTTCCAAATCTCATGCCGCTTTCTCAGagGGTGAAACCCTCGATAAAGTGTTCGAGGAAGGACTCTAGAAAAGTTTACGATGAATCGACGAATACAGAATGTGCCTGCGAAGTGTGTGGAAAACAGTGGCCAGCGAAGAAACATTTATGGCAACATTTAATTCGCTTTCATCGAGCAGAGGCTGCGGTTACTTGCGGAGTGTGTCTGAAACTTTGCAAAGATTACGATGATTTAGCAGAGCATTTGAAAGCCACGCACGAAGCAATCCTATCATGCGAGGGGAACAATTTTACGTGTAAAACGTGTGGCAGGTATCATAATGCACGCAGTAAGCTATTACTGCATACGAGTATCCACATTGGGCATTCGAGTAATGGAACTTCGTGTCCAAAATGCCACAAAAATATCACCGACGAAACTGATCATCCTAATACCTGTTCTGGCAAGACAGAAGAGGAAGAGGATgaggaggaagaagaggaagaggaacaTTTGAAGAACGAGCAAAAACCGGAAgGAAGCCTAATAGCGGATGATGCGATAATTGAGGAAGTAGAGGAAGGAGACTTTGAATCTGAAGCTGAAGAAGTAGACACGGAAGAATCGGACAGTGGCAGTAGTACCGAAGGCGAAGAGGAAAACGATTCCGAAGGTGAATCCAGAGCCACTGGGGAAATCACTTACAATTCAGAGAGCGAAGATTCTGAAGAATTAGATCATTTAGAAATGGAGGAAAAGGACATACAGTGTTTCGCTATAGAACATCTTCAAGAAACCAAAGACACAGAAACAGGGAAAAATGACGCGGATCTGTCGGATGACGACGGGCCTCCAATTCTCAGTCCCATAATGCCCATCCTTCAAGAAAACATATCCGAGGAACAGTCGGGAGGACACAAGCTCGACACAATAGTAACTCCGACTGAGAAAAGAATAGAATTATGTAATTCGTCGGAAATTCGAAATCAGTCTTCTCCAAAGTCAGTGAATTTCTATGGGAAAAGCATGTCTGCTGATGAACCTTTGACCTTTGAGTCCGAAACATTTATAAATCAAAGCGATGAAGACTTTGAAGATACAAAACACGAATATGACGAAAATTCTATTGAAGAAAATAAGGATCACGATGAAATTGAAGAGAATGAAGAGAATGAAGAGAATGAAGAGAATGAAGAGAATGAAGAGAATGAAGAGAATGAAGAGAATGAAGAGAATGAAGAGAATGAAGAGAACGAAGAGAATgaagaaaatgaggaaaacgaGGAAAACGAAGAAAATGAGGAGAATGAGAGCAACGAGGTAAACGAAGAAATCGAAGATAATGATGAGAGTAATGAGATGGAGGAAAATGCAGATAACGAGGAGAGCGAAGATAGTGAAAATGAAGAGATCGAGGAGAGCGGCGAAGATAGTGAAAATGAAGAGGAGGATAAAGAAGAAACAATGCAGTTGGATGATTTGGAAGGTGCGGTTTTGATGATGACCGAAGGAAATCAAATACTGATTCAACAGAATGTGTTAGATGACGATAACGAAAATACAAATCAGGAGTACGTTTATTCTGCGTTCGCGTACAGTTCGGAGGAGGACAGTGATGATGCAAGGAAGTGA
Protein Sequence: MEPRERYQELCRLCASYDAVKMDIFGQEGKNRQLVDKIQACLPFQIAEDDRLPKCLCYRCMYNLENFYDFRTACVNAVALLERCLPPSELVGGVATTLTCGNDLQLSKRKESIPMLIPEAPIVNPNAALGTPPRLNFDEEADHEAEDIVDNSGTDEATLVDDSEDRRSEEYEMDMETNPSDFLEMTSIVTEEPAESESRHQELSNSLPEHASQQHEVYVCSLCNKAFSSKGHLSLHARIHVGAGDVIGEKVLTDDHTSYKRPYQCDLCHKSYSTAKHRWGHVSTTHRGHPAVTCGYCSRIYSTRTNLEEHIKSRHAGLPAPTEVPVNNSYRPENRCQCNACGKICTDTMELNLHGRICVEERRLDHLGKNESRDNKIVDSSEASSIGSDEDSKDYRSVEAKLAKNPQLTILKQALTKGDSLKRDFEDKFTTNCKPKKLPKTENTDMRNDKKWYCETCPQLFTSVDDLKEHEAIHNTDKPFVCILCKKDFALKSSLSRHIQTLHGVDPCPIIESDKCLKKIVSRNWNESMDLDFEGKASSEFPLSPEINAENEEEDRESGQENLIEIETVFVCEICTRDFNDRASLWLHIRATHKEFAAFACGVCLKICADNTQLLNHVNMYHGGSKLLLSEQRRYSCTICGRQHDSRKKLIAHVSIHNVDPNYDPATFVQLNSNYYGENINGNEHILDYEEDGDKVDCYICYKSFPNEDHLIRHQRNAHRSEQLMSTGDSLNPSNLNGGGNRAQYHLFFVCELCGSSHPSKWERWLHVSSSHCNEPAIKCDREDCGKIFATKSLRNDHIQHHAIQGSSPNTCEICGKLWGSRVDYWKHVMGVHSDTVPLICGVCLKVFPNVLQLSTHVKSKHWPLTNGDFSCDICGRPYSNKSKMSRHRKIHGFEEACNNGMENNDHKADGRIRETELNCELCADLKFTSLEKLCNHRRIVHGLFPCDLCNKCYGRTSHLWKHVNRVHKGHEDVTCPYCLKTSASKDHLAAHISKIHRYEPDSRKDGKNNRQFKTEEVSLHYCEKCNKGFHKRYLLRRHMKGCQNYRKDPGALLTRCRACERIFKDRASLQKHIENHHSTYTCHLCNETITSKLGIMTHNRVKHMDHPDLTCNFGVCRKLFRTKEDLEAHRKDHRYHTNPNVCDFCGDTVENKLKLKMHVLSLHRNEIGVSCGVCLIPMKDPKELKSHVEEVHSSVLSRPNTCQVCGKQYASKWKAFDHTKKCHGKVFRTCKQCLAVFTEDSAIRDHYEMVHNVPKDQLAAFEYRLDIGSKNEDFEMESPDIIVKEEPDDLEYDVDLCDEDSSDSKRRRSLTDTFDCEMCPEMFINSDALSKHYRNMHNTDPERMFKRLKQEEQRRMRGKMSFVCKNCKRQFCTKTLYWSHVATCRRNILRKEVELLPLRNDILDNREEILKNNNQIKKEEPTSNLNIPDFNLFEDINLQLSGQRPLPNLMPLSQRVKPSIKCSRKDSRKVYDESTNTECACEVCGKQWPAKKHLWQHLIRFHRAEAAVTCGVCLKLCKDYDDLAEHLKATHEAILSCEGNNFTCKTCGRYHNARSKLLLHTSIHIGHSSNGTSCPKCHKNITDETDHPNTCSGKTEEEEDEEEEEEEEHLKNEQKPEGSLIADDAIIEEVEEGDFESEAEEVDTEESDSGSSTEGEEENDSEGESRATGEITYNSESEDSEELDHLEMEEKDIQCFAIEHLQETKDTETGKNDADLSDDDGPPILSPIMPILQENISEEQSGGHKLDTIVTPTEKRIELCNSSEIRNQSSPKSVNFYGKSMSADEPLTFESETFINQSDEDFEDTKHEYDENSIEENKDHDEIEENEENEENEENEENEENEENEENEENEENEENEENEENEENEENEENEENESNEVNEEIEDNDESNEMEENADNEESEDSENEEIEESGEDSENEEEDKEETMQLDDLEGAVLMMTEGNQILIQQNVLDDDNENTNQEYVYSAFAYSSEEDSDDARK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00218574;
90% Identity: iTF_00361069;
80% Identity: -