Basic Information

Insect: Bombus cullumanus
Gene Symbol: -
Assembly: GCA_014737535.1
Location: JACXIX010000020.1:566239-575103[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 30 1.4e-05 0.0013 19.1 0.9 1 23 196 218 196 218 0.98

2 30 0.0078 0.73 10.5 3.7 1 23 241 264 241 264 0.96

3 30 7.2e-05 0.0067 16.9 0.8 2 23 271 293 270 293 0.96

4 30 0.0047 0.44 11.1 0.1 1 21 314 334 314 335 0.95

5 30 0.0049 0.46 11.1 0.6 2 23 431 452 430 452 0.96

6 30 0.013 1.2 9.8 1.2 2 23 459 481 458 481 0.91

7 30 0.0001 0.0096 16.4 0.1 1 23 548 571 548 571 0.96

8 30 0.02 1.9 9.1 0.4 1 23 577 600 577 600 0.96

9 30 0.053 5 7.8 0.8 1 23 613 635 613 635 0.97

10 30 3.1e-05 0.0029 18.0 0.9 3 23 679 700 678 700 0.96

11 30 0.0011 0.1 13.1 0.9 2 23 760 783 759 783 0.95

12 30 2.7 2.5e+02 2.5 0.0 2 23 792 814 792 814 0.84

13 30 0.034 3.2 8.4 0.1 2 23 821 843 820 843 0.95

14 30 1.1e-05 0.0011 19.4 1.2 1 23 851 873 851 873 0.98

15 30 0.88 82 4.0 0.8 3 23 901 923 899 923 0.83

16 30 0.00018 0.017 15.6 3.3 1 23 926 949 926 949 0.97

17 30 0.0019 0.18 12.4 0.4 2 23 956 978 955 978 0.96

18 30 0.00079 0.074 13.6 3.9 1 21 1002 1022 1002 1023 0.95

19 30 0.0023 0.22 12.1 1.8 2 23 1037 1058 1036 1059 0.93

20 30 0.38 36 5.1 1.4 1 23 1062 1085 1062 1085 0.94

21 30 0.012 1.1 9.9 0.9 2 23 1092 1115 1091 1115 0.92

22 30 2.6 2.5e+02 2.5 0.2 2 23 1123 1145 1123 1145 0.94

23 30 3.3 3.1e+02 2.2 0.0 2 23 1152 1174 1151 1174 0.91

24 30 0.2 18 6.1 2.7 2 23 1183 1205 1183 1205 0.96

25 30 1.5 1.4e+02 3.3 0.1 2 23 1211 1233 1211 1233 0.95

26 30 4.9e-05 0.0046 17.4 0.2 1 23 1296 1319 1296 1319 0.96

27 30 0.029 2.8 8.6 4.0 1 21 1344 1364 1344 1365 0.94

28 30 0.43 40 5.0 1.3 2 23 1461 1483 1460 1483 0.94

29 30 0.25 23 5.7 0.2 2 23 1490 1512 1489 1512 0.94

30 30 1 96 3.8 1.9 1 23 1523 1545 1523 1545 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	30	1.4e-05	0.0013	19.1	0.9	1	23	196	218	196	218	0.98
2	30	0.0078	0.73	10.5	3.7	1	23	241	264	241	264	0.96
3	30	7.2e-05	0.0067	16.9	0.8	2	23	271	293	270	293	0.96
4	30	0.0047	0.44	11.1	0.1	1	21	314	334	314	335	0.95
5	30	0.0049	0.46	11.1	0.6	2	23	431	452	430	452	0.96
6	30	0.013	1.2	9.8	1.2	2	23	459	481	458	481	0.91
7	30	0.0001	0.0096	16.4	0.1	1	23	548	571	548	571	0.96
8	30	0.02	1.9	9.1	0.4	1	23	577	600	577	600	0.96
9	30	0.053	5	7.8	0.8	1	23	613	635	613	635	0.97
10	30	3.1e-05	0.0029	18.0	0.9	3	23	679	700	678	700	0.96
11	30	0.0011	0.1	13.1	0.9	2	23	760	783	759	783	0.95
12	30	2.7	2.5e+02	2.5	0.0	2	23	792	814	792	814	0.84
13	30	0.034	3.2	8.4	0.1	2	23	821	843	820	843	0.95
14	30	1.1e-05	0.0011	19.4	1.2	1	23	851	873	851	873	0.98
15	30	0.88	82	4.0	0.8	3	23	901	923	899	923	0.83
16	30	0.00018	0.017	15.6	3.3	1	23	926	949	926	949	0.97
17	30	0.0019	0.18	12.4	0.4	2	23	956	978	955	978	0.96
18	30	0.00079	0.074	13.6	3.9	1	21	1002	1022	1002	1023	0.95
19	30	0.0023	0.22	12.1	1.8	2	23	1037	1058	1036	1059	0.93
20	30	0.38	36	5.1	1.4	1	23	1062	1085	1062	1085	0.94
21	30	0.012	1.1	9.9	0.9	2	23	1092	1115	1091	1115	0.92
22	30	2.6	2.5e+02	2.5	0.2	2	23	1123	1145	1123	1145	0.94
23	30	3.3	3.1e+02	2.2	0.0	2	23	1152	1174	1151	1174	0.91
24	30	0.2	18	6.1	2.7	2	23	1183	1205	1183	1205	0.96
25	30	1.5	1.4e+02	3.3	0.1	2	23	1211	1233	1211	1233	0.95
26	30	4.9e-05	0.0046	17.4	0.2	1	23	1296	1319	1296	1319	0.96
27	30	0.029	2.8	8.6	4.0	1	21	1344	1364	1344	1365	0.94
28	30	0.43	40	5.0	1.3	2	23	1461	1483	1460	1483	0.94
29	30	0.25	23	5.7	0.2	2	23	1490	1512	1489	1512	0.94
30	30	1	96	3.8	1.9	1	23	1523	1545	1523	1545	0.92

Sequence Information

Coding Sequence: ATGGACATCTTCGGTCAAGAGGGCAAGAACAGACAGCTCGTTGACAAGATACAAGCTTGTCTGCCGTTTAAGATTGCAGAAAATGATCGACTACCAAAATGCCTCTGTTATCGGTGTATGTACAATTTGGAAAATTTCTATGATTTTAGAACAGCATGTGTTAATGCAGTGGCACTCTTGGAAAGGTGTTTATCACCTTCAGAATTGAATGGAGATGTTACAACCATCTTGACGTGCTGTAGTGATTCAGAGTTTTTTGAAGGACAGAAAAATATACCAGTGTTAATTCCGGAAGCTCCTATCGTAAATCCAAATGCTGCTTTAGGCACACCACCCAGATTAAATTCTGATGGAGAGGCTGATCATGAGACAGAAGAAATTGATAACAGTGGGACAGACGAAGCAACAGTCATGGACGACTCTGAAGATCGTCATTCAGAGGAGTATGAAATGGATATGGAGACAAATCCAAGTGATTTTTTGGAAATGACCTCGATAGTTGCAGAAGAACCTGAAGAATCAGGATTGAAACATCAGGATGTTTCCAGTAACTTATCAGAGCATACATCTCAACAACATGAAGTTTATGTTTGTTCCTTGTGCAGCAAAGCATTTAGTTCAAAGGGTCATTTGTCCTTGCACGCACGCATTCACGTTGGTGCCGGTAACGTGATTGGTGAAAAAGTTCTTACGGATGATCATACATCATATAAAAGGCCCTATCAGTGTGATCTCTGTCATAAATCATACTCCACTGCAAAACATCGTTGGGGTCACGTATCTACAACTCATAGAGGCCATCCGGCAGTGACATGCAGTTATTGTTCCCGTATCTACTCAACCCGAACAAATTTGGAAGAACATATAAAATCACGTCATGCTGGTCTTCCAGCACCTACGGAGGTTCCACTGAACAATACCTATCGGCCAGAAAATAGGTATCAATGCAATGCTTGTGGGAAGATTTGTACGGATGCTATGGAATTGAATCTTCATGGTAGGATTTGTACCGAAGGACAGAGATTAGATCTTTCAGGAAAAAACGAGATTAGTGATAATAAAGTTGTGGATAGTTCAGAAGCTTCAAGTATTGGAAGTGATGACGATGGCAAAGATTATAGAAGTGCGGAAGCTAAATTAGCGAAAAATCCTCAATTAACAATTTTAAAACAAGCATTAACGAAAGGAGATAGTCTTAAGCGAGATTTTGAAGACAAATTTACTACAAATTGCAAGCCAAAAAAATTTCCGAAAACAGAGCATACTGACTTTCAACATACTAAGAAATGGTATTGTGAATCGTGTCCACAATGTTTTACTTCAGTTAATGATTTAAAAGAACACGAAGCAACTCACAATGCGGATAAGCCATTTATTTGTATTTTGTGTAAAAAAGACTTTTTTCTTAAATCTTCTTTAAGCAGGCATATTCAAACGTTACATGGTGTTGATCCATGTCCTATGGTGGAAAGTGACAAATGTCTAAAGAAAATTGTTTCACATAATTGGAATGAATCTATGGATCTTGATTCGTATGAGGGTAAAACCTCTTCTGAATTTCCATTGTCTCCAGATACAAATGCAGAAAATGAAGATGACCATGAGAGTGGACAAGAAAATCTCATTGAAATTGAAACTGTGTTTGTTTGTGAAATTTGTACTCGTGATTTTAATGACCGTGCATCTCTTTGGCTTCATATTCGTGCTACTCACAAAGAATTTGCAGCATTTGCATGTGGTGTTTGTTTAAAAATTTGTGCAGACAACACACAACTTTTGAACCATGTAAATATGTACCACGGCGGCTCGAAATTACTACTTTCTGAACAAAGAAGGTACAGTTGTACTATTTGTGGTAGGCAACATGATTCCAGAAAAAAATTAATTGCTCATGTATCCATACATAATGTGGATTCAAATTATGATCCTGCTACCTTTGTTCAGTTAAATAGTAATTATTATGGAGAGAACATTAACGGTAACGAAACTGCAGAACAAATGCTTGACTATGAAGAGGATAGCGATAAAGTGGACTGTTATATTTGTTATAAATCGTTTCCTAATGAAGATCATTTAATACGACATCAAAGAAATGCACACAGATCGGAACAACTAGTGCCAGCAGGAGATCCTTTAAATCCTTCAAGTTTAAATGGTGGTGGTAATAGAGCTCAATATCATCTCTTTTTCGTTTGTGAACTTTGTGGGAGTTCACATCCTAGTAAATGGGAACGTTGGCTACATGTTAGTTCGTCTCATAGCAATGAATCAGCCATAAAATGTGATCGTGAAGATTGCGGTAAAATTTTTGCTACAAAATCTCTCAGAAACGAACATATTCAGCATCACGCAATTCAAGGTTCATCCCCAAATACTTGTGAAATTTGTGGTAAACTTTGGGGTAGTAGAGTTGATTATTGGAAGCATGTTATGGGCGTTCATTCGGATACTGTTCCATTAATTTGTGGTGTCTGTTTAAAAGTGTTTCCAAATGTTTTGCAATTGAGTACTCATGTAAGATCGAAACATTGGCCGTTAACGAATGGTGACTTTAGCTGTGACATTTGTGGTAGACCATATTCGAATAAATCCAAAATGTCCAGACATAGAAAAATCCATGGTTTTGAAGAAAACTGTGAAAATGGGGCTGAAAATAGCGAGAATAAAATAGAGGGACGAATGAGGGAAACAGAATTAAGTTGCGAGCTTTGTGCAGATTTGAAGTTTACTAGTTTAGAAAAATTATGTAATCATAGACGAATCATTCATGGACTTTTCCCTTGTGATCTCTGTAATAAATGCTATGGAAGAACTTCACATTTATGGAAACATGTAAACAGAGTTCACAAAGGTCATGAAGATGTAACTTGCCCTTATTGTATGAAAACTAGTGCTTCAAAAGATCATTTAGCAGCACACATTTCAAAAATTCATAGATACGAACCTGATTCCAGAAAAGATGCGAAAGATAATAGACAATTTAAAACCGAAGAAGTTAGTTTACATTATTGCGAAAAATGTAATAAAGGATTTCACAAGCGGTATCTATTGCGTAGACATATGAAAGGATGTCAGAATTACAGGAAAGACCCTGGAGCATTATTAACGAGGTGCAGAGCTTGTGAAAGAATATTTAAAGATCGTGCCAGTTTACAAAAACATATCGAGAATCATCATAGCACATACACGTGTCATCTTTGTAATGAAACAATTACCTCAAAATTAGGGATTATGACACATAACAGGGTGAAGCATATGGATCATCCAGATTTAACTTGCAATTTTGGATCTTGTAGGAAATTATTCAGAACTAAAGAAGATTTAGAAGCCCATAGGAAAGATCACAGATATCATACCACTCCTAACGTTTGTGATTTCTGCGGTGATACTGTTGAAAATAAACTGAAGTTAAAAATGCACGTCTTATCTCTTCATCGCAATGAAATTGGTGTATCTTGTGGAGTGTGTTTAATACCAATGAAAGATCCAAAAGAACTTAAAAGTCACGTAGAAAAAGTTCATTTCAGTGTTCTTTCAAGACCCAATACGTGTCAAGTTTGTGGAAAACAATATGCTTCAAAATGGAAAGCGTTTGATCATACTAAAAAATGCCATGGAAAAGTATTTAGGACTTGTAAACAATGTCTAGCTGTTTTCACTGAAGATTCTGCAATTAGAGATCATTATGAAACAATACATAATATTCCCAAAGATCAACTTGCAGCATTTGAACATAGATTAGATATTGGGTCAAAAAACGAAGATTTTGGAATAGAGTCTCCTGATATAATAGTGAAAGAAGAACCAGAGGATTTGGAATACGAAGTAGATATGTGTGATGAAGATTCTAGTGACTCAAAAAGGAGAAGGTGCTTAACGGATACCTACGATTGTGAAATGTGTCCAGAAATGTTTGTAAACAGTGATGCACTTTCAAAACATTATCGTAATATGCACAATACTGATCCAGAAAGAATGTTTAAAAGATTAAAACAGGATGAACAGAGAAGAATGCGTGGTAAATTGAATTTCTCTTGCAAGAATTGTAGGCGACAATTTTGCACTAAAACATTATATTGGAACCATATTACAACTTGCAGACGAAATATACGAAAAGGAGAGGAGAATTTATCTTTACGAAATGACATGTTAAGTAGCCAAGAAGAATTTTTGAAGAATAATAATCAAATTAAGAAAGAAGAGCCTACATCAGATTTAAATATTCCTGATTTCAATCTCTTTGAAGATATAAATCTTCAACTCTCTGGTCAGAGACCTCTCCCGAATCTTATGCCACTCACTCAGAGAGCGAAATCTTCAATAAAATGTTCAAGAAAGGATTCTAGGAAAGTTTATGATGAATCAACAAATACAGAATGTGCTTGTGAAGTGTGTGGAAAACAATGGCCAGCAAAGAAACATTTATGGCAACATTTAATTCGTTTCCATCGAGCGGAAGCAGCAGTCACTTGTGGAGTATGTTTAAAACTTTGTAAAGATTATGATGATTTGGCAGAACATTTGAAAGCTGCACACGAAGCGATATTGTCAACTGAAGGAAATAATTTTACATGTAAAATTTGCGGCAGGTATCACAATGCTCGTAGTAAATTGTTATTGCACACAAGTATTCACATCGGCCATCCAGGTACTAGTACTTGGTGTCCAAAATGTCGGAAAAATATTACCGATGAAGCTGCACATTCGACTATGTGTAATACGAAGATGGAAGAAGGAGAACAAATGAAAAATAATGAAAAGGCAGAGGGAAGTCTAATAGCTGATGATGCGATAATTGAAGAAGTGGAAGAAGGGGATTTTGAATCTGAAGCAGAAGAAGAAGCAGATACAGAAGAATCAGAAAGTGGTAGTAGTACCGAAGCGGAAGAGGAACATGAATCAGAGGATGAATCTAGAGCAACTGGAGAAATTACTTACAATTCAGAGAGTGAGGATTCAGAAGAACTAGATAATTTAGAAATTGATGAAAAGAACATGGAGCATTATCCTTTAAAACATCTTCCAGAATCCAAAAATACAGAAACAAAGAAACACGATGCAAATTTATCGGATGATGATGGACCTCCTGTTCTCAGTCCCATGATGCCTCTGCTTCCTGAGAATATGTCTGTAGAACAGCCGATAGGTCATAAACTAGGCCCTATAGTGTCTCTAACTGAGAAAGACATGTGTGATTTATCAGAGATTCGAAATCGATCCTCCCCGAAATCTATGAATTTATATGAAAAACACTTACCTAACAATGAATCATTAGAGTTGGGATCTGAAACATTTGCAAATCGAAGCGATGAAGATTTTGAGGATACGAAGAACGAATCTGATGAAAACTCCACTGAAGAAAATGAGGAAGAGAATGAGGATAATGAGGGGATTGAGGAAAACGATGAAATAGAATTAAACGAAGATATAGAAGAACCTGGAGTTAACGAGGAAATTGAGAAAAATGGGGATAGTGAACATGTTGAAGATAATGAAGAGAATGAAGAAAACGGGGATATTGAAGAAATGGAAGAAAATGAAAGAAACGAAGGGATTGATGGGTCAGAAGAACACGAAGGAAACGAAGAAATTGAAGAGACAGACGAAGAAAATGAGGAGAGAGAGGAAAACATGCAATTGGATGATCTGGAAGGTGCTGTTCTAATGGTGACTGATGGGAATCAAATATTGATTCAGCAAGGAATAATAGAAGACGAGAATGAGAATTCAAATCAAGAATATGTTTATTCTGCGCTTAGGTACAGTACAGAAGAGGACAGCGACGATGCAAGGAAATGA
Protein Sequence: MDIFGQEGKNRQLVDKIQACLPFKIAENDRLPKCLCYRCMYNLENFYDFRTACVNAVALLERCLSPSELNGDVTTILTCCSDSEFFEGQKNIPVLIPEAPIVNPNAALGTPPRLNSDGEADHETEEIDNSGTDEATVMDDSEDRHSEEYEMDMETNPSDFLEMTSIVAEEPEESGLKHQDVSSNLSEHTSQQHEVYVCSLCSKAFSSKGHLSLHARIHVGAGNVIGEKVLTDDHTSYKRPYQCDLCHKSYSTAKHRWGHVSTTHRGHPAVTCSYCSRIYSTRTNLEEHIKSRHAGLPAPTEVPLNNTYRPENRYQCNACGKICTDAMELNLHGRICTEGQRLDLSGKNEISDNKVVDSSEASSIGSDDDGKDYRSAEAKLAKNPQLTILKQALTKGDSLKRDFEDKFTTNCKPKKFPKTEHTDFQHTKKWYCESCPQCFTSVNDLKEHEATHNADKPFICILCKKDFFLKSSLSRHIQTLHGVDPCPMVESDKCLKKIVSHNWNESMDLDSYEGKTSSEFPLSPDTNAENEDDHESGQENLIEIETVFVCEICTRDFNDRASLWLHIRATHKEFAAFACGVCLKICADNTQLLNHVNMYHGGSKLLLSEQRRYSCTICGRQHDSRKKLIAHVSIHNVDSNYDPATFVQLNSNYYGENINGNETAEQMLDYEEDSDKVDCYICYKSFPNEDHLIRHQRNAHRSEQLVPAGDPLNPSSLNGGGNRAQYHLFFVCELCGSSHPSKWERWLHVSSSHSNESAIKCDREDCGKIFATKSLRNEHIQHHAIQGSSPNTCEICGKLWGSRVDYWKHVMGVHSDTVPLICGVCLKVFPNVLQLSTHVRSKHWPLTNGDFSCDICGRPYSNKSKMSRHRKIHGFEENCENGAENSENKIEGRMRETELSCELCADLKFTSLEKLCNHRRIIHGLFPCDLCNKCYGRTSHLWKHVNRVHKGHEDVTCPYCMKTSASKDHLAAHISKIHRYEPDSRKDAKDNRQFKTEEVSLHYCEKCNKGFHKRYLLRRHMKGCQNYRKDPGALLTRCRACERIFKDRASLQKHIENHHSTYTCHLCNETITSKLGIMTHNRVKHMDHPDLTCNFGSCRKLFRTKEDLEAHRKDHRYHTTPNVCDFCGDTVENKLKLKMHVLSLHRNEIGVSCGVCLIPMKDPKELKSHVEKVHFSVLSRPNTCQVCGKQYASKWKAFDHTKKCHGKVFRTCKQCLAVFTEDSAIRDHYETIHNIPKDQLAAFEHRLDIGSKNEDFGIESPDIIVKEEPEDLEYEVDMCDEDSSDSKRRRCLTDTYDCEMCPEMFVNSDALSKHYRNMHNTDPERMFKRLKQDEQRRMRGKLNFSCKNCRRQFCTKTLYWNHITTCRRNIRKGEENLSLRNDMLSSQEEFLKNNNQIKKEEPTSDLNIPDFNLFEDINLQLSGQRPLPNLMPLTQRAKSSIKCSRKDSRKVYDESTNTECACEVCGKQWPAKKHLWQHLIRFHRAEAAVTCGVCLKLCKDYDDLAEHLKAAHEAILSTEGNNFTCKICGRYHNARSKLLLHTSIHIGHPGTSTWCPKCRKNITDEAAHSTMCNTKMEEGEQMKNNEKAEGSLIADDAIIEEVEEGDFESEAEEEADTEESESGSSTEAEEEHESEDESRATGEITYNSESEDSEELDNLEIDEKNMEHYPLKHLPESKNTETKKHDANLSDDDGPPVLSPMMPLLPENMSVEQPIGHKLGPIVSLTEKDMCDLSEIRNRSSPKSMNLYEKHLPNNESLELGSETFANRSDEDFEDTKNESDENSTEENEEENEDNEGIEENDEIELNEDIEEPGVNEEIEKNGDSEHVEDNEENEENGDIEEMEENERNEGIDGSEEHEGNEEIEETDEENEEREENMQLDDLEGAVLMVTDGNQILIQQGIIEDENENSNQEYVYSALRYSTEEDSDDARK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00218574;
90% Identity: iTF_00233377;
80% Identity: -