Basic Information

Insect: Melipona bicolor
Gene Symbol: -
Assembly: GCA_030673865.1
Location: JAHYIQ010000004.1:4335928-4345889[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 29 1.9e-05 0.002 19.0 0.9 1 23 282 304 282 304 0.98

2 29 0.01 1.1 10.4 3.7 1 23 327 350 327 350 0.96

3 29 0.00015 0.017 16.1 0.5 2 23 357 379 356 379 0.96

4 29 0.032 3.6 8.8 0.0 1 21 400 420 400 421 0.94

5 29 0.013 1.5 10.0 0.2 2 23 517 538 516 538 0.96

6 29 0.016 1.8 9.7 1.2 2 23 545 567 544 567 0.91

7 29 0.00013 0.015 16.3 0.1 1 23 633 656 633 656 0.96

8 29 0.027 2.9 9.1 0.4 1 23 662 685 662 685 0.96

9 29 0.07 7.7 7.8 0.8 1 23 698 720 698 720 0.97

10 29 4e-05 0.0044 18.0 0.9 3 23 764 785 763 785 0.96

11 29 0.0014 0.16 13.1 0.9 2 23 845 868 844 868 0.95

12 29 3.5 3.9e+02 2.4 0.0 2 23 877 899 877 899 0.84

13 29 0.044 4.9 8.4 0.1 2 23 906 928 905 928 0.95

14 29 1.5e-05 0.0016 19.3 1.2 1 23 936 958 936 958 0.98

15 29 1.1 1.3e+02 3.9 0.8 3 23 986 1008 984 1008 0.83

16 29 0.00024 0.026 15.5 3.3 1 23 1011 1034 1011 1034 0.97

17 29 0.0007 0.078 14.0 0.6 2 23 1041 1063 1040 1063 0.96

18 29 0.001 0.11 13.5 3.9 1 21 1087 1107 1087 1108 0.95

19 29 0.003 0.33 12.0 1.8 2 23 1122 1143 1121 1144 0.93

20 29 0.5 55 5.1 1.4 1 23 1147 1170 1147 1170 0.94

21 29 0.03 3.3 8.9 1.3 2 23 1177 1200 1176 1200 0.92

22 29 3.4 3.8e+02 2.4 0.2 2 23 1208 1230 1208 1230 0.94

23 29 0.25 28 6.0 2.7 2 23 1268 1290 1268 1290 0.96

24 29 1.9 2.1e+02 3.2 0.1 2 23 1296 1318 1296 1318 0.95

25 29 6.4e-05 0.007 17.3 0.2 1 23 1381 1404 1381 1404 0.96

26 29 0.056 6.2 8.1 3.4 1 21 1429 1449 1429 1450 0.93

27 29 0.32 35 5.7 1.3 2 23 1541 1563 1540 1563 0.94

28 29 0.77 85 4.5 0.3 2 23 1570 1592 1569 1592 0.94

29 29 5.4 5.9e+02 1.8 2.6 1 23 1603 1625 1603 1625 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	29	1.9e-05	0.002	19.0	0.9	1	23	282	304	282	304	0.98
2	29	0.01	1.1	10.4	3.7	1	23	327	350	327	350	0.96
3	29	0.00015	0.017	16.1	0.5	2	23	357	379	356	379	0.96
4	29	0.032	3.6	8.8	0.0	1	21	400	420	400	421	0.94
5	29	0.013	1.5	10.0	0.2	2	23	517	538	516	538	0.96
6	29	0.016	1.8	9.7	1.2	2	23	545	567	544	567	0.91
7	29	0.00013	0.015	16.3	0.1	1	23	633	656	633	656	0.96
8	29	0.027	2.9	9.1	0.4	1	23	662	685	662	685	0.96
9	29	0.07	7.7	7.8	0.8	1	23	698	720	698	720	0.97
10	29	4e-05	0.0044	18.0	0.9	3	23	764	785	763	785	0.96
11	29	0.0014	0.16	13.1	0.9	2	23	845	868	844	868	0.95
12	29	3.5	3.9e+02	2.4	0.0	2	23	877	899	877	899	0.84
13	29	0.044	4.9	8.4	0.1	2	23	906	928	905	928	0.95
14	29	1.5e-05	0.0016	19.3	1.2	1	23	936	958	936	958	0.98
15	29	1.1	1.3e+02	3.9	0.8	3	23	986	1008	984	1008	0.83
16	29	0.00024	0.026	15.5	3.3	1	23	1011	1034	1011	1034	0.97
17	29	0.0007	0.078	14.0	0.6	2	23	1041	1063	1040	1063	0.96
18	29	0.001	0.11	13.5	3.9	1	21	1087	1107	1087	1108	0.95
19	29	0.003	0.33	12.0	1.8	2	23	1122	1143	1121	1144	0.93
20	29	0.5	55	5.1	1.4	1	23	1147	1170	1147	1170	0.94
21	29	0.03	3.3	8.9	1.3	2	23	1177	1200	1176	1200	0.92
22	29	3.4	3.8e+02	2.4	0.2	2	23	1208	1230	1208	1230	0.94
23	29	0.25	28	6.0	2.7	2	23	1268	1290	1268	1290	0.96
24	29	1.9	2.1e+02	3.2	0.1	2	23	1296	1318	1296	1318	0.95
25	29	6.4e-05	0.007	17.3	0.2	1	23	1381	1404	1381	1404	0.96
26	29	0.056	6.2	8.1	3.4	1	21	1429	1449	1429	1450	0.93
27	29	0.32	35	5.7	1.3	2	23	1541	1563	1540	1563	0.94
28	29	0.77	85	4.5	0.3	2	23	1570	1592	1569	1592	0.94
29	29	5.4	5.9e+02	1.8	2.6	1	23	1603	1625	1603	1625	0.92

Sequence Information

Coding Sequence: ATGGAGGAGGTCATGCTCGTCAGTGGTGACGGAACAAGTCGAGCCGCGGATCCCCGCTCCGAAGGATGTGATccgaggaagaagagaagaaggcCGAGTCCGGGCCAGAGGAGCCTTTTTCTACACTGCCACGAGGGAATCCGGATTATCCAACTTCCTCGGACCAGTATCGTGATCGTCTTCGTGGCCATGCCGACGATGGAGCCCAAGGAACGCTACCAGGAGCTCTGTCGACTTTGCGCATCCTACGACGCCGTCAAGATGGACATCTTCGGCCAAGAGGGCAAGAGCAGACAGCTCGTTGACAAGATACAAGCCTGTCTGCCGTTTAAGattGCAGAAAATGATCGACTACCAAAATGCCTGTGTTATAGGTGTATGtacaatttggaaaatttctatGATTTTAGAACAGCATGTGTTAATGCAGTTGCTCTCTTGGAAAGATGTTTATCACCTTTAGGAccgaatGGAGATGTTACTACCATCTTGACATGTAATGATTCAGAGTTCTTTAAAGGAAGGAAAAGTATACCAGTCCTTATTCCAGAAGCTCCTATTGTAAATCCAAATGCTGCTTTAGGCACACCACCCAGATTAAATTCTGATGGAGAGGCTGACCATGAGATAGAAGAAATTGATAATAGTGGCACAGATGAAGCAACAATCATGGATGATTCTGAAGATCATCATTCAGAGGAGTATGAAATGGATATGGAAACAAATCCTAGTGATTTTTTGGAAATGACTTCAATAGTTACAGAAGAACCTGAAGAATCAGAATTGAAACATCAGGATATTTCCAGTAACTTACCAGAGcACACATCTCAACAACATGAAGTTTATGTTTGTTCTTTGTGCAGCAAAGCATTTAGTTCAAAAGGTCATTTGTCTTTACATGCACGCATTCACGTTGGTGCGGGTGACGTGATTGGCGAAAAAGTTCTTACAGATGATCATACATCATATAAAAGGCCCTATCAATGTGATCTTTGTCATAAATCTTATTCCACTGCAAAACATCGTTGGGGTCATGTTTCTACAACTCATAGAGGTCATCCAGCAGTGACATGCGGTTATTGTTCTCGGATTTACTCAACTCGAACAAATTTGGAAGAACATATAAAATCACGTCACGCTGGTCTTCCAGCACCTACAGAGATTTCACTGAATAATGTCTATCAGtcggaaaataaatatcagtgCAGTGCTTGTGGGAAGATTTGCATAGATGCCATGGAACTGAATCTTCATGGTAGAATTTGTACTGAAGGACAAAGATTAGATCTTCCAGGGAAAAACGAGATTAgggataataaaattgtagataGTTCCGAAGCTTCAAGTATTGGAAGTGATGATGATGGCAAAGATTATAGAAGTGCGGAAGCTAAATTGGCAAAAAATCCTCagttaacaattttaaaacaagCATTAACAAAGGGAGATAGTCTTAAGCGAGATTTTGAAGATAAATTTACTTCAAATTGCAAACCaaaaaaattgccaaaaaCAGaGCATTGTGATTTTCAAAATACTAAGAAATGGTATTGCGAATCTTGCCCTCAGTGTTTTATTTCAGTTGAGGATTTAAGAGAGCATGAAGCAACTCATTTTACGGATAAAccatttatttgtattttgtgtAAAAAAGACTTTTTCCTTAAATCTTCCTTAAGCAGGCATATTCAAACCTTACATGGAGTTGATCCATGCCCTATAATAGAAAGTGATAAGTGTTTAAAGAAAGTTGTTTCACGTAATTGGAATGAATCTATGGATATTGATTCGTATGAGggtaaaatttctgaatttccaCTGTCTCCAgagataaatgtagaaaatgaagaagacCATGAGAATGGGCAAGAAAATCTtatcgaaattgaaactgtGTTTGTTTGTGAAATTTGTACTCGTGATTTTAATGATCGTGCATCCCTCTGGCTTCATATTCGTGCTACACATAAAGAATTTGCAGCATTTGCATGTGgtgtttgtttgaaaatttgtgcAGACAATACTCAACTTTTGAACCATGTAAACATGTATCACGGTGGTTCAAAATTACTGCTTTCTGAACAAAGAAGGTACAGTTGTACTATTTGTGGTAGACAACAtgattcgagaaaaaaattaattgcccATGTATCCATACATAATGTAGATCCAAATTATGATCCTGCTacttttgttcaattaaatagtaattattacGGAGAGAATATTAATGGTAATGAAACAGCAGAACAAATGCTCGACTATGAAGAAGATGGAGATAAAGTGgattgttatatttgttataaatcaTTTCCTAATGAAGATCATTTGATACGACATCAAAGAAATGCACATAGatCGGAACAACTAATGCCAACAGGAGATCCTTTAAATCCGTCGAATTTAAATGGTGGCGGAAATAGAGCTCAATATcatcttttctttgtttgtgAACTTTGTGGGAGTTCACATCATAGTAAATGGGAACGTTGGCTACATGTTAGCTCATCTCATAGCAATGAATCAGCCATAAAATGTGATCGTGAAGACTGTGGTAAAATTTTTGCTACAAAATCTCTTAGAAATGAACATATTCAACATCACGCAATTCAAGGTTCATCCCCAAATACTTGTGAAATCTGCGGTAAACTTTGGGGCAGTAGAGTTGATTATTGGAAGCATGTTATGGGCGTACATTCGGATACCGTTCCATTAATTTGTGGCGTCTGTTTAAAAGTATTTCCAAATGTTTTGCAATTAAGTACTCATGTAAGATCGAAACATTGGCCGTTAACGAATGGTGATTTTAGTTGTGATATTTGTGGTAGACCATATTCGAATAAATCCAAAATGTCTAGACACAGAAAAATCCATGGTTTTGAAGAAAGCTGTGACAACGGGAcagaaaatttcgagaataaaatcGACGGAAGAATGAGAGAAACAGAACTAAGTTGTGAGCTTTGTgcagatttgaaatttactaGCTTAGAAAAATTGTGTAATCATAGACGAATCGTTCATGGACTTTTTCCTTGTGATCTCTGTAATAAATGCTATGGCAGAACTTCGCATTTATGGAAACATGTGAACAGAGTTCATAAAGGCCATGAAGATGTAACTTGTCCTTATTGTTTGAAAACTAGTGCTTCGAAAGATCATTTAGCAACtcacatttcaaaaattcatagaTACGAACCAGATTCTAGAAAAGATGGAAAAGATAGTAGACAATTTAAAACCGAAGAAGTTAGTTTACATTATtgtgaaaaatgtaataaaggATTTCACAAGCGGTATCTTTTACGTAGACACATGAAAGGATGTCAGAATTATAGAAAAGATCCTGGAGCATTATTAACAAGATGCAGAGCTTGCGAAAGGATATTTAAAGATCGTGCCAGTTTACAAAAGCATATTGAGAATCATCATAGTACATACACGTGTCATCTTTGTAATGAGACGATTACTTCAAAATTGGGAATTATGACACATAACAGAGTGAAACATATGGATCATCCAGATTTAACTTGTAATTTTGGATCATGTAGGAAATTATTCAGAACTAAAGAAGATTTGGAATCTCATAGAAAAGATCACAGATATCATACAACTCCCAACGTTTGCGATTTCTGCGGTGATAcggttgaaaataaattgaaattaaagatgCACGTTTTGTCTCTTCATCGCAATGAAATTGGTGTATCTTGTGGAGTATGTTTAATTCCAATGAAAGATCCGAAAGAACTTAAAAGTCACGTAGAAGAAGTTCATTCTAGTGTGCTTTCAAAACCTAATACATGTCAAGTTTGTGGGAAACAATATGCTTCAAAATGGAAAGCTTTTGATCATACTAAAAAGTGTCATGGAAAAGTATTTAGGACTTGTAAACAGTGTTTAGCTGTTTTCACTGAAGATTCTGCGATTAGAGATCATTATGAAACAATACATAATATCCCCAAAGATCAGCTCGCATTATTCGAGCATAGATTAGATATTGGGTCAAAAAATGAGGATTTCGAAATAGAGTCTCCTGATGTAATAGTTAAAGAAGAACCAGAGGATTTAGAATATGAAGTAGATATATGTGATGAAGATTCTAGtgattcaaaaagaagaagatccTTAACTGATACTTACGATTGTGAAATGTGTCCAGAAATGTTTGTGAACAGTGATGCACTTTCAAAACATTATCGTAATATGCACAATATAGATCCAGAGAGAATATTTAAGAGATTGAAACAGGATGAACAGAGAAAAATGCGTagcaaaatgaatttcttttgtaaaaattgtaggAGACAATTTTGTACTAAAACATTATATTGGAATCATATTGCAACTTGTagaaaaaatgtacgaaaaggCGAAGAACGAAATGATATGTTAAATAatcaagaatttttgaaaaataataatcaaattaaaaaagaggAGCCCACatcaaatttgaatattccTGATTTCAATCTCTTTGAAGATATAAATCTTCAACTCTCAGGTCAGAGACCTCTTCCAAATCTTATGCCACTGAATCAGAGAACAAAATCTTCAATGAAATGTTCAAGAAAGGATTCTAGGAAAGTTTATGATGAATCAACAAATACAGAATGTGTTTGTGAAGTATGTGGAAAACAATGGCCTGCAAAGAAACATTTATGGCAACATCTAATTCGTTTCCATCGAGCGGAAGCAGCAGTCACTTGTGGAGTATGTCTAAAACTTTGCAAAGACTATAATGATTTGGCAGAACATTTGAAAGCTGCACACGAAGCAATCCTTTCTACTGAAGGAAACAATTTTACATGTAAAACTTGTGGCAGATATCACAATGCTCGTAgtaaattgttattacatACGAGTATCCATATCGGCCATCCAGGTACTAGTACTTGGTGTCCAAAATGTCGGAAAAATATTACCGACGAAACTGCACATTTAACTACTTGTAATACGAAAACGGAAGAAGGAGAACAATTGAAAAGTAATGAAAAAGCAGAAgGAAGTTTAATAGCGGATGACGCGATGATTGAAGAAGTGGAAGAAGGAGATTTTGAATCcgaagcagaagaagaagcagaaacAGAAGAATCGGAAAGTGGTAGTAGTACCGAGGTTGAAGAGGAACATGAGTCAGAGGATGAATCTAGAGTAACTGGAGATATTACTTACAACTCAGAGAGTGAAGATTCAGAAGAACtagataatttagaaattgatGAAAAGAATATGGAGCATTATGCCTTAAAACACCTTCAAGAATCTAAAAATACAgaaaaacagaaacatGATGCGAATTTGTCAGATGATGATGAACCTCCAGTTCTCAGTCCCATGATGCCTTTGCTTTCTGAGAATATGTCTGAACAATCGATGGGTCATAAACTAAGTTCTATAGTGCCTCTAACTGGGAAAGGAATGGGAATATGTGATTTATCAGAGATTCGAAATGGATCCTCTCCAAAATCTGTGAACCTATATGAAAAACACTTACCTAATAATGAATCTTTAGAGCTTGAATCTGAAACATTTGCGAATCAAAGCGATGAAGATTTTGAGGATgcgaaaaatgaatttgatgGAAACTCTACCGAAGAAAATGATGAAGAAAATGAGGATAATGAGGAGATTgaagaaaatgatgaaatggaattaaatGAAGTGATAGAAGAAGTTGACGAGAATGAAGAAATTGAGAGAAATGAGGATAGTGAACAGATTGAAGATAATGACGGTAATGAAGagaatgaagaaaatgaagagaatgaagaaaatgaagaaaatgaagagaatGAAGGGAATGGAGATATTGAAGAAATGGAAGAGATTGAAAGAAATGGAAGTATTGATGAGtcagacgaagaagaagaaaatgatgaaaatgatGAGAGAGAGGAAAACATGCAATTGGATGATTTAGAAGGTGCTGTTTTAATGGTGGCTGAAGGTGATCAGATATTGATTCAACAAGAAATATTGGAggacgaaaatgaaaattcaaatcaagAATATGTTTATTCTGCGCTCAGATACAGTTCAGAGGAGGACAGTGACGATACAAGGAAATGA
Protein Sequence: MEEVMLVSGDGTSRAADPRSEGCDPRKKRRRPSPGQRSLFLHCHEGIRIIQLPRTSIVIVFVAMPTMEPKERYQELCRLCASYDAVKMDIFGQEGKSRQLVDKIQACLPFKIAENDRLPKCLCYRCMYNLENFYDFRTACVNAVALLERCLSPLGPNGDVTTILTCNDSEFFKGRKSIPVLIPEAPIVNPNAALGTPPRLNSDGEADHEIEEIDNSGTDEATIMDDSEDHHSEEYEMDMETNPSDFLEMTSIVTEEPEESELKHQDISSNLPEHTSQQHEVYVCSLCSKAFSSKGHLSLHARIHVGAGDVIGEKVLTDDHTSYKRPYQCDLCHKSYSTAKHRWGHVSTTHRGHPAVTCGYCSRIYSTRTNLEEHIKSRHAGLPAPTEISLNNVYQSENKYQCSACGKICIDAMELNLHGRICTEGQRLDLPGKNEIRDNKIVDSSEASSIGSDDDGKDYRSAEAKLAKNPQLTILKQALTKGDSLKRDFEDKFTSNCKPKKLPKTEHCDFQNTKKWYCESCPQCFISVEDLREHEATHFTDKPFICILCKKDFFLKSSLSRHIQTLHGVDPCPIIESDKCLKKVVSRNWNESMDIDSYEGKISEFPLSPEINVENEEDHENGQENLIEIETVFVCEICTRDFNDRASLWLHIRATHKEFAAFACGVCLKICADNTQLLNHVNMYHGGSKLLLSEQRRYSCTICGRQHDSRKKLIAHVSIHNVDPNYDPATFVQLNSNYYGENINGNETAEQMLDYEEDGDKVDCYICYKSFPNEDHLIRHQRNAHRSEQLMPTGDPLNPSNLNGGGNRAQYHLFFVCELCGSSHHSKWERWLHVSSSHSNESAIKCDREDCGKIFATKSLRNEHIQHHAIQGSSPNTCEICGKLWGSRVDYWKHVMGVHSDTVPLICGVCLKVFPNVLQLSTHVRSKHWPLTNGDFSCDICGRPYSNKSKMSRHRKIHGFEESCDNGTENFENKIDGRMRETELSCELCADLKFTSLEKLCNHRRIVHGLFPCDLCNKCYGRTSHLWKHVNRVHKGHEDVTCPYCLKTSASKDHLATHISKIHRYEPDSRKDGKDSRQFKTEEVSLHYCEKCNKGFHKRYLLRRHMKGCQNYRKDPGALLTRCRACERIFKDRASLQKHIENHHSTYTCHLCNETITSKLGIMTHNRVKHMDHPDLTCNFGSCRKLFRTKEDLESHRKDHRYHTTPNVCDFCGDTVENKLKLKMHVLSLHRNEIGVSCGVCLIPMKDPKELKSHVEEVHSSVLSKPNTCQVCGKQYASKWKAFDHTKKCHGKVFRTCKQCLAVFTEDSAIRDHYETIHNIPKDQLALFEHRLDIGSKNEDFEIESPDVIVKEEPEDLEYEVDICDEDSSDSKRRRSLTDTYDCEMCPEMFVNSDALSKHYRNMHNIDPERIFKRLKQDEQRKMRSKMNFFCKNCRRQFCTKTLYWNHIATCRKNVRKGEERNDMLNNQEFLKNNNQIKKEEPTSNLNIPDFNLFEDINLQLSGQRPLPNLMPLNQRTKSSMKCSRKDSRKVYDESTNTECVCEVCGKQWPAKKHLWQHLIRFHRAEAAVTCGVCLKLCKDYNDLAEHLKAAHEAILSTEGNNFTCKTCGRYHNARSKLLLHTSIHIGHPGTSTWCPKCRKNITDETAHLTTCNTKTEEGEQLKSNEKAEGSLIADDAMIEEVEEGDFESEAEEEAETEESESGSSTEVEEEHESEDESRVTGDITYNSESEDSEELDNLEIDEKNMEHYALKHLQESKNTEKQKHDANLSDDDEPPVLSPMMPLLSENMSEQSMGHKLSSIVPLTGKGMGICDLSEIRNGSSPKSVNLYEKHLPNNESLELESETFANQSDEDFEDAKNEFDGNSTEENDEENEDNEEIEENDEMELNEVIEEVDENEEIERNEDSEQIEDNDGNEENEENEENEENEENEENEGNGDIEEMEEIERNGSIDESDEEEENDENDEREENMQLDDLEGAVLMVAEGDQILIQQEILEDENENSNQEYVYSALRYSSEEDSDDTRK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00218574;
90% Identity: iTF_00982438;
80% Identity: -