Basic Information

Insect: Bombus confusus
Gene Symbol: -
Assembly: GCA_014737475.1
Location: JACXIV010000055.1:106176-114276[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 30 1.3e-05 0.00099 19.2 0.9 1 23 217 239 217 239 0.98

2 30 0.007 0.54 10.6 3.7 1 23 262 285 262 285 0.96

3 30 0.0001 0.0081 16.4 0.5 2 23 292 314 291 314 0.96

4 30 0.0043 0.33 11.3 0.1 1 21 335 355 335 356 0.95

5 30 0.069 5.3 7.5 0.2 2 23 452 473 451 473 0.94

6 30 0.0006 0.046 14.0 1.1 1 23 479 502 479 502 0.97

7 30 0.00045 0.035 14.4 0.0 1 23 567 590 567 590 0.96

8 30 0.018 1.4 9.3 0.4 1 23 596 619 596 619 0.96

9 30 0.048 3.7 8.0 0.8 1 23 632 654 632 654 0.97

10 30 2.8e-05 0.0021 18.2 0.9 3 23 698 719 697 719 0.96

11 30 0.00099 0.076 13.3 0.9 2 23 779 802 778 802 0.95

12 30 2.4 1.9e+02 2.6 0.0 2 23 811 833 811 833 0.84

13 30 0.031 2.4 8.6 0.1 2 23 840 862 839 862 0.95

14 30 1e-05 0.00078 19.6 1.2 1 23 870 892 870 892 0.98

15 30 0.86 66 4.1 0.8 8 23 926 942 918 942 0.83

16 30 0.00016 0.013 15.8 3.3 1 23 945 968 945 968 0.97

17 30 0.0017 0.13 12.6 0.4 2 23 975 997 974 997 0.96

18 30 0.00071 0.055 13.8 3.9 1 21 1021 1041 1021 1042 0.95

19 30 0.0021 0.16 12.3 1.8 2 23 1056 1077 1055 1078 0.93

20 30 0.34 26 5.3 1.4 1 23 1081 1104 1081 1104 0.94

21 30 0.02 1.6 9.2 1.3 2 23 1111 1134 1110 1134 0.92

22 30 2.4 1.8e+02 2.7 0.2 2 23 1142 1164 1142 1164 0.94

23 30 7.3 5.6e+02 1.1 0.0 2 23 1171 1193 1170 1193 0.88

24 30 0.18 14 6.2 2.7 2 23 1202 1224 1202 1224 0.96

25 30 1.3 1e+02 3.5 0.1 2 23 1230 1252 1230 1252 0.95

26 30 4.5e-05 0.0034 17.5 0.1 1 23 1315 1338 1315 1338 0.96

27 30 0.039 3 8.3 3.4 1 21 1363 1383 1363 1384 0.93

28 30 0.38 30 5.2 1.3 2 23 1480 1502 1479 1502 0.94

29 30 0.22 17 5.9 0.2 2 23 1509 1531 1508 1531 0.94

30 30 0.93 71 4.0 1.9 1 23 1542 1564 1542 1564 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	30	1.3e-05	0.00099	19.2	0.9	1	23	217	239	217	239	0.98
2	30	0.007	0.54	10.6	3.7	1	23	262	285	262	285	0.96
3	30	0.0001	0.0081	16.4	0.5	2	23	292	314	291	314	0.96
4	30	0.0043	0.33	11.3	0.1	1	21	335	355	335	356	0.95
5	30	0.069	5.3	7.5	0.2	2	23	452	473	451	473	0.94
6	30	0.0006	0.046	14.0	1.1	1	23	479	502	479	502	0.97
7	30	0.00045	0.035	14.4	0.0	1	23	567	590	567	590	0.96
8	30	0.018	1.4	9.3	0.4	1	23	596	619	596	619	0.96
9	30	0.048	3.7	8.0	0.8	1	23	632	654	632	654	0.97
10	30	2.8e-05	0.0021	18.2	0.9	3	23	698	719	697	719	0.96
11	30	0.00099	0.076	13.3	0.9	2	23	779	802	778	802	0.95
12	30	2.4	1.9e+02	2.6	0.0	2	23	811	833	811	833	0.84
13	30	0.031	2.4	8.6	0.1	2	23	840	862	839	862	0.95
14	30	1e-05	0.00078	19.6	1.2	1	23	870	892	870	892	0.98
15	30	0.86	66	4.1	0.8	8	23	926	942	918	942	0.83
16	30	0.00016	0.013	15.8	3.3	1	23	945	968	945	968	0.97
17	30	0.0017	0.13	12.6	0.4	2	23	975	997	974	997	0.96
18	30	0.00071	0.055	13.8	3.9	1	21	1021	1041	1021	1042	0.95
19	30	0.0021	0.16	12.3	1.8	2	23	1056	1077	1055	1078	0.93
20	30	0.34	26	5.3	1.4	1	23	1081	1104	1081	1104	0.94
21	30	0.02	1.6	9.2	1.3	2	23	1111	1134	1110	1134	0.92
22	30	2.4	1.8e+02	2.7	0.2	2	23	1142	1164	1142	1164	0.94
23	30	7.3	5.6e+02	1.1	0.0	2	23	1171	1193	1170	1193	0.88
24	30	0.18	14	6.2	2.7	2	23	1202	1224	1202	1224	0.96
25	30	1.3	1e+02	3.5	0.1	2	23	1230	1252	1230	1252	0.95
26	30	4.5e-05	0.0034	17.5	0.1	1	23	1315	1338	1315	1338	0.96
27	30	0.039	3	8.3	3.4	1	21	1363	1383	1363	1384	0.93
28	30	0.38	30	5.2	1.3	2	23	1480	1502	1479	1502	0.94
29	30	0.22	17	5.9	0.2	2	23	1509	1531	1508	1531	0.94
30	30	0.93	71	4.0	1.9	1	23	1542	1564	1542	1564	0.92

Sequence Information

Coding Sequence: ATGGAGTCCAGGGAACGCTACCAGGAGCTCTGCAGACTATGCGCATCCTACGACGCCGTCAAGATGGACATCTTCGGTCAAGAGGGCAAGAACAGACAGCTCGTTGACAAGATACAAGCTTGTCTGCCGTTTAAGATTGCAGAAAATGATCGACTACCAAAATGCCTCTGTTATCGGTGTATGTACAATTTGGAAAATTTCTATGATTTTAGAACAGCATGTGTTAATGCAGTGGCTCTCTTGGAAAGGTGTTTATCACCTTCAGAATCGAATGGAGATGTTACAACCATTCTGACATGCTGTAACGATTCAGAGTTCTTCAAAGGACAGAAAAGTATACCAGTGTTAATTCCGGAAGCTCCTATCGTAAATCCAAATGCTGCTTTAGGCACACCACCCAGATTGAATTCTGATGGAGAGGCTGATCATGAGACAGAAGAAATTGATAACAGTGGGACAGACGAAGCAACAGTCATGGATGACTCTGAAGATCGTCATTCAGAGGAGTATGAAATGGATATGGAGACAAATCCAAGTGATTTTTTGGAAATGACCTCGATAGTTGCAGAAGAACCTGAAGAATCAGAATTGAAACATCAAGGTGTTTCCAGCAACTTATCAGAGCATACATCTCAACAACATGAAGTTTATGTTTGTTCCTTGTGCAGCAAAGCATTTAGTTCAAAGGGTCATTTGTCCTTGCACGCACGCATTCACGTTGGTGCCGGTGACGTGATTGGTGAAAAAGTTCTTACGGATGATCATACATCATATAAAAGGCCCTATCAGTGCGATCTTTGTCATAAATCATACTCCACCGCAAAACATCGTTGGGGTCATGTATCTACAACTCATAGAGGCCATCCAGCAGTGACATGTGGTTATTGTTCCCGGATCTATTCAACCCGAACAAATTTGGAGGAACATATAAAATCACGTCATGCTGGTCTTCCAGCACCTACAGAGGTTGCACTGAATAATGCCTATCGGCCAGAAAATAGATATCAATGCAATGCTTGTGGGAAGATTTGCACGGATGCTATGGAATTGAATCTTCATGGTAGGATTTGCACCGAAGGACAGAGATTAGATCTTTCAGGGAAAAACCAGATTAGGGATAATAAAGTTGTGGATAGTTCAGAAGCTTCAAGTATTGGAAGTGATGACGATGGCAAAGATTATAGAAGTGCAGAAGCTAAATTAGCGAAAAATCCTCAATTAACAATTTTAAAACAAGCATTAACGAAAGGAGATAGTCTTAAGCGAGATTTTGAGGACAAATTTACTACAAACTGCAAACCAAAAAAATTACCGAAAACAGAGCATACCGACTTTCAACACACTAAGAAATGGTATTGTGAATCCTGTCCTCAATATTTTACTTCAGTTAATGATTTAAAAGAACACGAAACAATTCACAATGCCGATAAGCCATTTATTTGTGTTTTGTGTAAAAAAGATTTTTTTCTTAAATCTTCCTTAAGCAGGCATATTCAAACATTACACGGTGTTGATCCATGTTCTATGGTGGAAAGTGATAAATGTCTAAAGAAAATTGTTTCACATAATTGGAACGAATCTATGGATCTTGACTCGTACGAGGGTAAAACCTCTTCTGAATTTCCATTGTCTCCAGATGTACAAAATGAAGAAGACCATGAGAGTGGACAAGAAAATCTCATTGAAATTGAAACTGTGTTTGTTTGTGAAATTTGTGCTCGTGATTTTAATGACCGTGCATCTCTTTGGCTTCATATTCGTGCTACTCACAAAAAATTTGCAGCATTTGCATGTGGTGTTTGTTTGAAAATTTGCGCAGACAACACACAACTTTTAAACCATGTAAATATGTACCACGGTGGCTCGAAATTATTACTCTCTGAACAAAGAAGGTACAGTTGTACTATTTGTGGTAGGCAACATGATTCCAGAAAAAAATTAATTGCTCATGTATCCATACATAATGTGGATCCAAATTATGATCCTGCTACCTTTGTACAGTTAAATAGTAATTATTACGGAGAGAATATTAACGGTAACGAAACTGCAGAACAAATGCTTGACTACGAAGAGGATGGCGATAAAGTGGACTGTTATATTTGTTATAAATCGTTTCCTAATGAAGATCATTTAATACGACATCAAAGAAATGCACACAGATCAGAACAACTAGTGCCAGCAGGAGATCCTTTAAATCCTTCGAGTTTAAATGGCGGTGGTAATAGAGCTCAATATCATCTCTTTTTCGTTTGTGAACTTTGTGGGAGTTCACATCCTAGTAAATGGGAACGTTGGCTACACGTTAGCTCATCTCATAGCAATGAATTAGCCATAAAATGTGATCGTGAAGATTGTGGTAAAATTTTTGCTACAAAATCTCTCAGAAACGAACATATTCAGCATCACGCAATTCAAGGTTCATCCCCAAATACTTGTGAAATCTGTGGTAAACTTTGGGGTAGTAGAGTTGATTATTGGAAGCACGTTATGGGCGTTCATTCGGATACTGTTCCATTAATTTGTGGTGTCTGTTTAAAAGTGTTTCCAAATGTTTTGCAACTGAGTACTCATGTAAGATCGAAACATTGGCCGTTAACGAATGGTGACTTTAGCTGCGACATTTGCGGTAGACCATATTCGAATAAATCCAAAATGTCCAGACATAGAAAAATTCATGGTTTTGAGGAAAGCTGCGAAAATGGGGCTGAAAATAGCGAGAATAAAGTAGAGGGACGAATGAGGGAAACAGAATTAAATTGCGAGCTTTGTGCAGATTTGAAGTTTACTAGTTTAGAAAAATTATGTAATCATAGAAGAATCGTTCATGGACTTTTCCCTTGTGATCTCTGTAATAAATGCTATGGAAGAACTTCGCATTTATGGAAACATGTAAACAGAGTTCACAAAGGTCATGAAGATGTAACTTGCCCTTATTGTATGAAAACTAGTGCCTCAAAAGACCATTTAGCAGCACACATTTCAAAAATTCATAGATACGAACCTGATTCTAGAAAAGATGGGAAAGATAATAGACAATTTAAAACCGAAGAAGTTAGTCTACATTATTGCGAAAAATGTAATAAAGGATTTCACAAGCGATATCTATTGCGTAGACATATGAAAGGATGTCAGAATTACAGGAAAGACCCTGGAGCATTATTAACGAGATGCAGAGCTTGTGAAAGAATATTTAAAGACCGTGCCAGTTTACAAAAGCATATCGAGAATCATCATAGCACATATACGTGTCATCTTTGTAATGAAACAATTACCTCAAAATTAGGGATTATGACGCATAACAGGGTGAAGCATATGGATCATCCAGATTTAACTTGCAATTTTGGATCTTGTAGGAAATTATTCAGAACTAAAGAAGATTTAGAATCCCATAGAAAAGATCACAGATATCATACCACTCCTAACGTTTGTGATTTCTGCGGTGATACTGTTGAAAATAAACTGAAGTTAAAAATGCACGTTTTATCTCTTCATCGCAATGAAATTGGTGTATCTTGTGGAGTGTGTTTAATACCAATGAAAGATCCAAAAGAACTTAAAAGTCACGTAGAAGAAGTTCATCCCAGTATTCTTTCAAGACCCAACACGTGTCAAGTTTGTGGGAAACAATATGCTTCAAAATGGAAAGCGTTTGATCATACTAAAAAATGCCATGGTAAAGTATTTAGGACTTGTAAACAATGTCTAGCTGTTTTCACCGAAGATTCTGCAATTAGAGATCATTATGAAACAATACATAATATTCCCAAAGATCAACTTGCAGCATTTGAACATAGATTAGATATTGTGTCGAAAAACGAAGATTTTGAAATAGAGTCTCCCGATATAATAGTGAAAGAAGAACCAGAGGATTTAGAATATGAAGTAGATATGTGTGACGAAGATTCTAGTGACTCAAAAAGGAGAAGATCCTTAACGGATACCTACGATTGTGAAATGTGTCCAGAAATGTTTGTAAACAGTGATGCACTTTTGAAACATTATCGTAACATGCACAATACTGATCCAGAAAGAATGTTTAAAAGACTAAAACAGGATGAACAGAGAAGAATACGTGGTAAACTGAATTTCTTTTGTAAGAATTGTAGGCGACAATTTTGCACTAAAACTTTATATTGGAACCATATTGCAACTTGCAGGAGAAATATACGAAAAGGAGAGGAACATTTATCTTCACGAAATGACATGCTAAGTAGTCAAGAAGAATTTTTGAAGAATAATAATCAAATTAAGAAAGAAGAGCCTATATCAAATTTAAATATTCCCGATTTCAATCTCTTTGAAGATATAAATCTTCAACTCTCTGGTCAGAGACCTGTCCCGAATCTTATGCCACTCACTCAGAGGGCGAAATCTTCAATAAAATGTTCAAGAAAGGATTCCAGGAAAGTTTATGATGAATCAACAAATACAGAATGTGCTTGTGAAGTGTGTGGAAAACAATGGCCAGCAAAGAAACATTTATGGCAACATTTAATTCGTTTCCATCGAGCGGAAGCTGCAGTTACTTGTGGAGTATGTTTGAAACTTTGTAAAGATTATGATGATTTGGCAGAACATTTGAAAGCTGTACACGAAGCGATTCTATCAACTGAAGGAAACAATTTTACATGTAAAATTTGCGGCAGGTATCACAATGCTCGTAGTAAATTGTTATTACACACAAGTATTCACATCGGTCATCCAGGTACTAGCACTTGGTGTCCAAAATGTCGGAAAAATATTACCGATGAAGCTGCACATTCGACTACGTGTAATACGAAGACGGAAGAAGGAGAACAAAGGAAAAATAATGAAAAAGCAGAGGGAATTCTAATAGCTGATGATGCGATAATTGAAGAAGTGGAAGAAGGGGATTTTGAATCTGAAGCAGAAGAAGAAGCAGATACGGAAGAATCAGAAAGTGGTAGCAGTAGCGAAGCCGAAGAGGAACATGAATCAGAGGATGAATCTAGAGCAACTGGAGAAATTACTTACAATTCAGAGAGTGAAGATTCAGAAGAACTAGATAATTTGGAAATTGATGAAAAGAACATGGAACATTATGCTTTAAAACATCTTCCAGAATCTAAAAATACAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTGCAGAAACAGAGAAACACAATGCAAATTTATCCGATGA
Protein Sequence: MESRERYQELCRLCASYDAVKMDIFGQEGKNRQLVDKIQACLPFKIAENDRLPKCLCYRCMYNLENFYDFRTACVNAVALLERCLSPSESNGDVTTILTCCNDSEFFKGQKSIPVLIPEAPIVNPNAALGTPPRLNSDGEADHETEEIDNSGTDEATVMDDSEDRHSEEYEMDMETNPSDFLEMTSIVAEEPEESELKHQGVSSNLSEHTSQQHEVYVCSLCSKAFSSKGHLSLHARIHVGAGDVIGEKVLTDDHTSYKRPYQCDLCHKSYSTAKHRWGHVSTTHRGHPAVTCGYCSRIYSTRTNLEEHIKSRHAGLPAPTEVALNNAYRPENRYQCNACGKICTDAMELNLHGRICTEGQRLDLSGKNQIRDNKVVDSSEASSIGSDDDGKDYRSAEAKLAKNPQLTILKQALTKGDSLKRDFEDKFTTNCKPKKLPKTEHTDFQHTKKWYCESCPQYFTSVNDLKEHETIHNADKPFICVLCKKDFFLKSSLSRHIQTLHGVDPCSMVESDKCLKKIVSHNWNESMDLDSYEGKTSSEFPLSPDVQNEEDHESGQENLIEIETVFVCEICARDFNDRASLWLHIRATHKKFAAFACGVCLKICADNTQLLNHVNMYHGGSKLLLSEQRRYSCTICGRQHDSRKKLIAHVSIHNVDPNYDPATFVQLNSNYYGENINGNETAEQMLDYEEDGDKVDCYICYKSFPNEDHLIRHQRNAHRSEQLVPAGDPLNPSSLNGGGNRAQYHLFFVCELCGSSHPSKWERWLHVSSSHSNELAIKCDREDCGKIFATKSLRNEHIQHHAIQGSSPNTCEICGKLWGSRVDYWKHVMGVHSDTVPLICGVCLKVFPNVLQLSTHVRSKHWPLTNGDFSCDICGRPYSNKSKMSRHRKIHGFEESCENGAENSENKVEGRMRETELNCELCADLKFTSLEKLCNHRRIVHGLFPCDLCNKCYGRTSHLWKHVNRVHKGHEDVTCPYCMKTSASKDHLAAHISKIHRYEPDSRKDGKDNRQFKTEEVSLHYCEKCNKGFHKRYLLRRHMKGCQNYRKDPGALLTRCRACERIFKDRASLQKHIENHHSTYTCHLCNETITSKLGIMTHNRVKHMDHPDLTCNFGSCRKLFRTKEDLESHRKDHRYHTTPNVCDFCGDTVENKLKLKMHVLSLHRNEIGVSCGVCLIPMKDPKELKSHVEEVHPSILSRPNTCQVCGKQYASKWKAFDHTKKCHGKVFRTCKQCLAVFTEDSAIRDHYETIHNIPKDQLAAFEHRLDIVSKNEDFEIESPDIIVKEEPEDLEYEVDMCDEDSSDSKRRRSLTDTYDCEMCPEMFVNSDALLKHYRNMHNTDPERMFKRLKQDEQRRIRGKLNFFCKNCRRQFCTKTLYWNHIATCRRNIRKGEEHLSSRNDMLSSQEEFLKNNNQIKKEEPISNLNIPDFNLFEDINLQLSGQRPVPNLMPLTQRAKSSIKCSRKDSRKVYDESTNTECACEVCGKQWPAKKHLWQHLIRFHRAEAAVTCGVCLKLCKDYDDLAEHLKAVHEAILSTEGNNFTCKICGRYHNARSKLLLHTSIHIGHPGTSTWCPKCRKNITDEAAHSTTCNTKTEEGEQRKNNEKAEGILIADDAIIEEVEEGDFESEAEEEADTEESESGSSSEAEEEHESEDESRATGEITYNSESEDSEELDNLEIDEKNMEHYALKHLPESKNTXXXXXXXXXXXXCRNRETQCKFIR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00218574;
90% Identity: iTF_00233377;
80% Identity: -