Basic Information

Insect: Osmia bicornis
Gene Symbol: -
Assembly: GCA_907164935.1
Location: NC:7475067-7484793[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 29 1.1e-05 0.00069 20.4 1.0 1 23 219 241 219 241 0.98

2 29 0.016 0.99 10.4 3.7 1 23 264 287 264 287 0.96

3 29 0.00024 0.015 16.2 0.5 2 23 294 316 293 316 0.96

4 29 0.0029 0.18 12.8 0.5 2 21 338 357 337 358 0.92

5 29 0.37 23 6.1 0.3 3 23 453 473 451 473 0.89

6 29 0.0094 0.58 11.1 0.4 2 23 480 502 479 502 0.91

7 29 0.00021 0.013 16.3 0.1 1 23 567 590 567 590 0.96

8 29 0.042 2.6 9.1 0.4 1 23 596 619 596 619 0.96

9 29 0.11 6.8 7.8 0.8 1 23 632 654 632 654 0.97

10 29 8.4e-05 0.0052 17.6 0.9 3 23 698 719 697 719 0.96

11 29 0.0023 0.14 13.1 1.0 2 23 779 802 778 802 0.95

12 29 5.6 3.4e+02 2.4 0.0 2 23 811 833 811 833 0.84

13 29 0.16 9.5 7.3 0.1 2 23 840 862 839 862 0.95

14 29 2.3e-05 0.0014 19.4 1.2 1 23 870 892 870 892 0.98

15 29 1.3 79 4.4 0.8 3 23 920 942 918 942 0.83

16 29 0.00037 0.023 15.6 3.3 1 23 945 968 945 968 0.97

17 29 0.00074 0.046 14.6 0.3 2 23 975 997 974 997 0.96

18 29 0.0016 0.1 13.5 3.9 1 21 1021 1041 1021 1042 0.95

19 29 0.0048 0.3 12.1 1.8 2 23 1056 1077 1055 1078 0.93

20 29 0.79 48 5.1 1.4 1 23 1081 1104 1081 1104 0.94

21 29 0.024 1.5 9.9 0.9 2 23 1111 1134 1110 1134 0.92

22 29 5.4 3.3e+02 2.5 0.2 2 23 1142 1164 1142 1164 0.94

23 29 0.4 25 6.0 2.7 2 23 1202 1224 1202 1224 0.96

24 29 5.7 3.5e+02 2.4 0.1 2 23 1230 1252 1230 1252 0.94

25 29 0.00018 0.011 16.6 0.2 1 23 1315 1338 1315 1338 0.96

26 29 0.075 4.6 8.3 3.0 1 20 1363 1382 1363 1384 0.94

27 29 0.57 35 5.5 1.9 2 23 1484 1506 1483 1506 0.94

28 29 0.3 18 6.4 0.5 2 23 1513 1535 1512 1535 0.94

29 29 8.5 5.2e+02 1.9 2.6 1 23 1546 1568 1546 1568 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	29	1.1e-05	0.00069	20.4	1.0	1	23	219	241	219	241	0.98
2	29	0.016	0.99	10.4	3.7	1	23	264	287	264	287	0.96
3	29	0.00024	0.015	16.2	0.5	2	23	294	316	293	316	0.96
4	29	0.0029	0.18	12.8	0.5	2	21	338	357	337	358	0.92
5	29	0.37	23	6.1	0.3	3	23	453	473	451	473	0.89
6	29	0.0094	0.58	11.1	0.4	2	23	480	502	479	502	0.91
7	29	0.00021	0.013	16.3	0.1	1	23	567	590	567	590	0.96
8	29	0.042	2.6	9.1	0.4	1	23	596	619	596	619	0.96
9	29	0.11	6.8	7.8	0.8	1	23	632	654	632	654	0.97
10	29	8.4e-05	0.0052	17.6	0.9	3	23	698	719	697	719	0.96
11	29	0.0023	0.14	13.1	1.0	2	23	779	802	778	802	0.95
12	29	5.6	3.4e+02	2.4	0.0	2	23	811	833	811	833	0.84
13	29	0.16	9.5	7.3	0.1	2	23	840	862	839	862	0.95
14	29	2.3e-05	0.0014	19.4	1.2	1	23	870	892	870	892	0.98
15	29	1.3	79	4.4	0.8	3	23	920	942	918	942	0.83
16	29	0.00037	0.023	15.6	3.3	1	23	945	968	945	968	0.97
17	29	0.00074	0.046	14.6	0.3	2	23	975	997	974	997	0.96
18	29	0.0016	0.1	13.5	3.9	1	21	1021	1041	1021	1042	0.95
19	29	0.0048	0.3	12.1	1.8	2	23	1056	1077	1055	1078	0.93
20	29	0.79	48	5.1	1.4	1	23	1081	1104	1081	1104	0.94
21	29	0.024	1.5	9.9	0.9	2	23	1111	1134	1110	1134	0.92
22	29	5.4	3.3e+02	2.5	0.2	2	23	1142	1164	1142	1164	0.94
23	29	0.4	25	6.0	2.7	2	23	1202	1224	1202	1224	0.96
24	29	5.7	3.5e+02	2.4	0.1	2	23	1230	1252	1230	1252	0.94
25	29	0.00018	0.011	16.6	0.2	1	23	1315	1338	1315	1338	0.96
26	29	0.075	4.6	8.3	3.0	1	20	1363	1382	1363	1384	0.94
27	29	0.57	35	5.5	1.9	2	23	1484	1506	1483	1506	0.94
28	29	0.3	18	6.4	0.5	2	23	1513	1535	1512	1535	0.94
29	29	8.5	5.2e+02	1.9	2.6	1	23	1546	1568	1546	1568	0.92

Sequence Information

Coding Sequence: ATGGAGCCCAGGGAACGATACCAAGAGCTCTGCAGACTTTGCGCATCCTACGACGCCGTCAAGATGGACATCTTCGGTCAAGAGGGCAAGAACAGACAGCTAGTTGACAAGATACAAGCTTGTCTACCGTTTAAGATTGCTGAAAATGATCGATTGCCAAAATGTCTATGTTACCGGTGTATGTacaatttggaaaatttctaTGACTTTAGGACAGCATGTGTCAATGCAGTGGCTCTCTTGGAAAGATGCTTACCACCTTCAGAATcgAATGGAAATGTTACAACCACCTTGATGTGTTGTAATGACTTAGAGCTGtacaaaggaaaagaaagcaTACCAGTTCTAATTCCAGAAGCTCCTATTGTAAATCCAAATGCTGCTTTAGGCACGCCACCCAGATTAAATTCTGATGGAGAGGCAGACCATGAACCTGAAGAAACTGTTGATAACAGTGCTACAGATGAAgCAACAATGGTGGATGATGAGTTTGAAGATCATCGTTCAGAGGAGTATGAAATGGATATGGAAACAAATCCAAGTGATTTTTTAGAAATGACTTCAATGGTTACTGAAGAACCTGAAGAATCTATATTGAGATATCAAGAACTTCCTAATCATTTGCCAGAgCATACGTCTCAGCAACACGAAGTTTACGTTTGTTCCTTATGTAACAAAGCATTTAGTTCGAAAGGCCATTTATCATTGCATGCACGTATTCACGTAGGAGCCGGTGATGTTATTGGCGAAAAAGTTCTTACGGATGATCATACATCCTACAAGAGGCCATACCAATGTGATCTTTGTCATAAATCATATTCAACTGCTAAGCATCGTTGGGGTCATGTTTCTACAACTCATAGAGGTCACCCTGCAGTGACATGTGGCTATTGTTCACGGATCTACTCAACCCGAACAAATTTAGAAGAACATATAAAATCACGTCACGCTGGTCTTCCAGCACCCGCAGGGGTTCCAGTGAGCAATTCCTATCGTCCGGAGAATAGATGCCAGTGTAATATTTGCGGGAAAATTTGTACAGATGCCATGGAATTGAATCTTCATGGTAGAATTTGCACTGAAGTACAAAATCTACCAGGGAGAAATGATAGCAGGGATAATAAAATCGTCGATACTTCTGAAACATCCAGTATTGGTAGTGATGACGATAGCAAAGATTATAGaACCGCAGAAGCAAAATTAGCTAACAATCCTCAGTTAACTATTTTGAAACAAGCATTGACAAAAGGAGATAGCCTTAAAAGAGATTTTGAAGACAAATTTACGGCAAATTGTAAACCACAGAAATTACCTAAGACAGaaaCCACGGATATGCAGAGTAGTAAAAAATGGTATTGTGAATGTTGTCCTCAGTCGTTTACCTCAGTTGAGGATTTAAAAGAACACGAAGGGATTCACGATGCTGACAAGCCTTTTATTTGTATTCTTTGTAACAAAGATTTCGTTCTTAAGTCTTCCTTAAGCAAACATATTCAGATGTTACACGGTGTTGATCCATATCCTTTAGTTGAAAGTGATAAGTGTTTGAAAAAAGTAGTTTCTCAAAGTTGGCATGAATCTATAGATATTGATTTATACGAGGGTAAAACTTCTTCTGAATTTCCTTTATCACCAGAGGCAAACGAAGAAGAGGACCGTGAAAGTGGGCAAGAAAACcttattgaaattgaaactgtATTCGTATGTGAAATCTGTACTCGTGATTTTAATGATCGCGCATCTCTTTGGCTTCATATTCGAGCTACTCATAAAGAATTCGCGGCATTTGCTTGTGGTGTTTGTCTAAAAATTTGTGCAGACAATACGCAGCTTTTGAATCATGTGAATATGTATCATGGCGGTTCGAAGTTACTACTATCCGAACAAAGAAGATACAGTTGCACCATCTGTGGCAGGCAACATGATtcgagaaaaaaattaattgcccACGTATCTATACATAACGTCGATCCAAATTTCGACCCAGCAAACTTTGTACAATTAAATAGTAATTACTACGGAGAAAATATGAATGGCAATGAAACCACAGAACAAATGCTTGATTACGAAGAAGACGGGGACAAAGTGGATTGTTATATTTGCTATAAATCATTTCCTAGCGAAGATCATTTGATAAGACATCAAAGAAATGCGCACAGGtctGAGCAATTAGTGCCAACAGGAGATCCTTTAAATTCGTCCAATTTAAACGGCGGTGGAAATAGAGCTCAGTATCATCTCTTCTTTGTCTGTGAGCTCTGTGGTAGTTCGCATTCCAGCAAATGGGAACGTTGGTTACACGTTAGTTCATCTCATAGCAATGAACCAACTATAAAATGTGACCGTGAGGATTGTGGTAAAATCTTTGCCACTAAGTCTCTTAGAAATGATCACATTCAACATCATGCGATTCAAGGTTCATCTCCTAACACATGCGAGATTTGTGGAAAACTTTGGGGTAGTAGAGTTGATTACTGGAAACACGTTATGGGAGTTCATTCGGACACTGTACCATTAATTTGTGGTGTCTGTCTGAAAGTGTTCCCCAATGTTCTACAATTGAGTACTCATGTAAAATCAAAGCATTGGCCGTTAACAAATGGCGACTTCAGTTGCGACATTTGCGGAAGACCGTATTCGAACAAATCAAAAATGTCTAGGCATAGAAAGATTCATGGGTTCGAGGAGATTTGTGATAATGTAACAGAGAAtagtgaaaataaaatagacgGACAAATCAGGGAAAGCGAATTAAGCTGTGAACTATGCGCGGACTTGAAATTCTCTAATCTAGAAAAATTATGTAATCATAGGCGAATTGTTCACGGACTTTTCCCTTGTGACCTCTGTAACAAATGTTACGGAAGAACTTCTCATTTATGGAAACACGTGAATAGAGTTCACAAGGGTCACGAAGATGTAACTTGTCCTTATTGTTTAAAAACAAGCGCTTCAAAGGATCATTTAGCTGCacatatttctaaaattcatAGATACGAACCTGATTCTAGGAAAGACAGAAAAGATAGTAGACAGTTTAAGACTGAAGAAGTTAGTTTGCATTATTGTGAGAAATGTAATAAAGGATTCCATAAACGATACCTTTTGCGCAGACATATGAAAGGATGTCAGAATTACAGAAAAGATCCTGGAGCTCTTTTAACTAGATGCAGAGCTTGCGAAAGAATATTTAAGGATCGTGCCAGTTTGCAGAAACATATTGAGAATCATCATAGCACGTACACCTGTCATCTGTGCAACGAGACGATTACTTCGAAACTAGGAATTATGACGCATAACAGAGTGAAACACATGGATCATCCAGATTTAACTTGCAATTTTGGTTCTTGTAGGAAATTGTTCAGGACTAAGGAAGATTTGGAAGCTCATAGAAAAGATCATAGgTACCATACAACGCCAAATGTTTGCGACTTTTGTGGTGACACTGTTGAGAACAAACTCAAGCTAAAAATGCACGTATTATCGCTTCATCGCAATGAAATCGGTGTATCGTGTGGAGTTTGTTTAATTCCAATGAAAGATCCAAAGGAGCTTAAGAGTCACGTAGAAGAAGTTCATTCCAGTGTTCTATCAAGACCTAACACATGTCAAGTCTGTGGAAAACAATATGCATCAAAATGGAAAGCTTTTGATCATACTAAAAAGTGTCATGGAAAAGTGTTCAGGACTTGTAAACAATGTTTGGCTGTTTTCACCGAAGATTCTGCTATAAGAGATCACTATGAAAGAGtgcataatatttcaaaagacCAGTTCGCTGCATTTGAATACAGGTTGGATATTGGTTCAAAGACTGAAGAATTTGAATTGGAGTCTCCTGACGTGATAGTTAAAGAGGAACCAGAGGATTTAGAGTATGATGTAGATCCTTGTGACGAAGATTCTAACGActcaaaaagaagaagatcATTAACAGATACTTTTGATTGCGAAATGTGCCCCGAAATGTTTGTGAGCAGCGATGCTCTTTCCAAACATTATCGTAATATGCACAACACGGATCCAGAAAGAATGTTCAAGAGATTAAAACAAGATGAACAGCGAAGGATGCGTGGAAGAATGAATTTCTCTTGTAAGAATTGCAAGAGGCAATTCTGCACCAAAACATTGTATTGGAGTCACGTTGCAAATTGTAGAAGAAGTGCTGTACGAAAAGAAGAAGAATTATTGCCTATGCGTAATAATATGTTAAATACCATTGGTAATGGAGaagaaatgttaaaaaataatcatcaaattaaaaaagaggAACCTACAACAAATTTGAATATTCCTGACTTTAATCTCTTCGAAGATATAAATCTTCAGTTATCAGGACAGAGACCGCTTCCAAACCTTATGCCACTTAATCAACGAGCAAAGTCCACGATGAAGTGTTCAAGGAAGGATTCTAGGAAGGTTTATGATGAATCTACAAACACAGAATGTACTTGTGAAGTTTGTGGAAAACAGTGGCCAGCAAAGAAACATTTATGGCAACATCTGATTCGTTTCCATCGAGCAGAAGCTGCAGTTACTTGCGGGGTGTGTTTGAAGCTCTGTAAAGACTACGATGATCTGGCAAACCATTTAAAGGCTACACATGAAGCAATTCTTTCATGTGAAGGAAATAATTTCACGTGTAAAACTTGTGGAAGGTATCACAACGCCCGTAGTAAATTACTACTACATACAAGCATTCATTTGGGACATACAGCCAATAGTACTTGGTGTTCAAAATGTAAAAAGAACATAACTGATGAAGCTGCTCATGCAAATGTCTGTTCTGGAAAAGTAgagcaagaagaagaacaatTAAAGAATGATGAAAAGGCAGAAGGAAGTCTGATGGCAGATGATACAATGATCGAAGTAGAAGAAGGAGATTTTGAATCTGAAGTTGAAGAAGCAGATACAGAAGAATCAGAAAGTGGTAGTAGTACCGAagttgaagaagaaaatgaatcggAAGGTGAATCTAGAGCCACTGGAGAAATTACTTACAACTCGGAAAGTGAAGATTCTGAAGAATTGGATAATTTAGATATCGAGGAAAAGAATATGCAGCGCTATACTTTGGAACGTCTTCAAGAAACCCAAAATACAGaaACGAGAAAGAATACACGTTTATCAGACGATGATGGACCTCCAGTTCTCAGTCCCATGATGCCTTTACTTCATGAAAATATGTCCGCAGAACAATCGGCGAGCCACAAATTTGGTTCTGTATTGCCTCtaagtgaaaaagaaataaaagtacGCGATTTATCTGAAATTCGAAATGGATCTTCACCGAAATCAGTTAATTTATATGAAAAAGAGCTACCTGATAATCCAACTTTGGATTATGTTTctaatacatttattaatagaGATGTTGGAGATTTTGAAAATACGAAAGTTGAGTTTGATGAAAATTCTGCTGAAGAAAATGACGAGCAAGAAGAGAATGACGAAGAAAATGATGAGCAGGAAGAAAATGACGAGGAAAATGATGAAATTGAAGACAGTAGAGAGAATGAAGAATACGAGGAAAATGAGGAATTTGATGGAAATGAAGAAATGTACGAACACGAAGAAAACGAAGACAATGAAGAGAACGACATTGAGTTACACGATGAAAATGAAGACAATGAAAAGAACGATATTGAGTTAcatgaagaaaatgaagacaATGAAGAGAACGATATTGAGTTACATGAAGGAACTGAAGAGAATGACGGGAACGAAGAGAGTGAAGGAAGCgaggaagaaaatgaagagcATGAAGACGATGAAGAAAGGGAGGATAATATACAGTTGGACGATTTAGAGGGTGCTGTGTTAATGGTAGCTGAAGGAGATCAAATACTGATTCAACAAGACATGTTagaagatgaaaatgaaaattcaaaacaaGAATATGTCTATTCTACGCTTAGGTACACTTCAGAAGAGGACAGTGACGATGCAAGGAAATGA
Protein Sequence: MEPRERYQELCRLCASYDAVKMDIFGQEGKNRQLVDKIQACLPFKIAENDRLPKCLCYRCMYNLENFYDFRTACVNAVALLERCLPPSESNGNVTTTLMCCNDLELYKGKESIPVLIPEAPIVNPNAALGTPPRLNSDGEADHEPEETVDNSATDEATMVDDEFEDHRSEEYEMDMETNPSDFLEMTSMVTEEPEESILRYQELPNHLPEHTSQQHEVYVCSLCNKAFSSKGHLSLHARIHVGAGDVIGEKVLTDDHTSYKRPYQCDLCHKSYSTAKHRWGHVSTTHRGHPAVTCGYCSRIYSTRTNLEEHIKSRHAGLPAPAGVPVSNSYRPENRCQCNICGKICTDAMELNLHGRICTEVQNLPGRNDSRDNKIVDTSETSSIGSDDDSKDYRTAEAKLANNPQLTILKQALTKGDSLKRDFEDKFTANCKPQKLPKTETTDMQSSKKWYCECCPQSFTSVEDLKEHEGIHDADKPFICILCNKDFVLKSSLSKHIQMLHGVDPYPLVESDKCLKKVVSQSWHESIDIDLYEGKTSSEFPLSPEANEEEDRESGQENLIEIETVFVCEICTRDFNDRASLWLHIRATHKEFAAFACGVCLKICADNTQLLNHVNMYHGGSKLLLSEQRRYSCTICGRQHDSRKKLIAHVSIHNVDPNFDPANFVQLNSNYYGENMNGNETTEQMLDYEEDGDKVDCYICYKSFPSEDHLIRHQRNAHRSEQLVPTGDPLNSSNLNGGGNRAQYHLFFVCELCGSSHSSKWERWLHVSSSHSNEPTIKCDREDCGKIFATKSLRNDHIQHHAIQGSSPNTCEICGKLWGSRVDYWKHVMGVHSDTVPLICGVCLKVFPNVLQLSTHVKSKHWPLTNGDFSCDICGRPYSNKSKMSRHRKIHGFEEICDNVTENSENKIDGQIRESELSCELCADLKFSNLEKLCNHRRIVHGLFPCDLCNKCYGRTSHLWKHVNRVHKGHEDVTCPYCLKTSASKDHLAAHISKIHRYEPDSRKDRKDSRQFKTEEVSLHYCEKCNKGFHKRYLLRRHMKGCQNYRKDPGALLTRCRACERIFKDRASLQKHIENHHSTYTCHLCNETITSKLGIMTHNRVKHMDHPDLTCNFGSCRKLFRTKEDLEAHRKDHRYHTTPNVCDFCGDTVENKLKLKMHVLSLHRNEIGVSCGVCLIPMKDPKELKSHVEEVHSSVLSRPNTCQVCGKQYASKWKAFDHTKKCHGKVFRTCKQCLAVFTEDSAIRDHYERVHNISKDQFAAFEYRLDIGSKTEEFELESPDVIVKEEPEDLEYDVDPCDEDSNDSKRRRSLTDTFDCEMCPEMFVSSDALSKHYRNMHNTDPERMFKRLKQDEQRRMRGRMNFSCKNCKRQFCTKTLYWSHVANCRRSAVRKEEELLPMRNNMLNTIGNGEEMLKNNHQIKKEEPTTNLNIPDFNLFEDINLQLSGQRPLPNLMPLNQRAKSTMKCSRKDSRKVYDESTNTECTCEVCGKQWPAKKHLWQHLIRFHRAEAAVTCGVCLKLCKDYDDLANHLKATHEAILSCEGNNFTCKTCGRYHNARSKLLLHTSIHLGHTANSTWCSKCKKNITDEAAHANVCSGKVEQEEEQLKNDEKAEGSLMADDTMIEVEEGDFESEVEEADTEESESGSSTEVEEENESEGESRATGEITYNSESEDSEELDNLDIEEKNMQRYTLERLQETQNTETRKNTRLSDDDGPPVLSPMMPLLHENMSAEQSASHKFGSVLPLSEKEIKVRDLSEIRNGSSPKSVNLYEKELPDNPTLDYVSNTFINRDVGDFENTKVEFDENSAEENDEQEENDEENDEQEENDEENDEIEDSRENEEYEENEEFDGNEEMYEHEENEDNEENDIELHDENEDNEKNDIELHEENEDNEENDIELHEGTEENDGNEESEGSEEENEEHEDDEEREDNIQLDDLEGAVLMVAEGDQILIQQDMLEDENENSKQEYVYSTLRYTSEEDSDDARK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00218574;
90% Identity: -
80% Identity: -