Basic Information

Insect: Bombus turneri
Gene Symbol: -
Assembly: GCA_014825825.1
Location: CM026104.1:7106783-7116674[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 30 1.5e-05 0.0014 19.1 0.9 1 23 217 239 217 239 0.98

2 30 0.0084 0.76 10.4 3.7 1 23 262 285 262 285 0.96

3 30 0.00013 0.011 16.2 0.5 2 23 292 314 291 314 0.96

4 30 0.0018 0.16 12.6 0.1 1 21 335 355 335 356 0.95

5 30 0.0053 0.48 11.1 0.6 2 23 452 473 451 473 0.96

6 30 0.00037 0.033 14.7 1.3 1 23 479 502 479 502 0.97

7 30 0.00011 0.0099 16.4 0.1 1 23 569 592 569 592 0.96

8 30 0.022 2 9.1 0.4 1 23 598 621 598 621 0.96

9 30 0.058 5.2 7.8 0.8 1 23 634 656 634 656 0.97

10 30 3.3e-05 0.003 18.0 0.9 3 23 700 721 699 721 0.96

11 30 0.0012 0.11 13.1 0.9 2 23 781 804 780 804 0.95

12 30 2.9 2.6e+02 2.5 0.0 2 23 813 835 813 835 0.84

13 30 0.037 3.3 8.4 0.1 2 23 842 864 841 864 0.95

14 30 1.2e-05 0.0011 19.4 1.2 1 23 872 894 872 894 0.98

15 30 0.94 85 4.0 0.8 3 23 922 944 920 944 0.83

16 30 0.0002 0.018 15.6 3.3 1 23 947 970 947 970 0.97

17 30 0.002 0.18 12.4 0.4 2 23 977 999 976 999 0.96

18 30 0.00085 0.077 13.6 3.9 1 21 1023 1043 1023 1044 0.95

19 30 0.0025 0.23 12.1 1.8 2 23 1058 1079 1057 1080 0.93

20 30 0.41 37 5.1 1.4 1 23 1083 1106 1083 1106 0.94

21 30 0.013 1.1 9.9 0.9 2 23 1113 1136 1112 1136 0.92

22 30 2.8 2.6e+02 2.5 0.2 2 23 1144 1166 1144 1166 0.94

23 30 8.7 7.8e+02 1.0 0.0 2 23 1173 1195 1172 1195 0.88

24 30 0.21 19 6.0 2.7 2 23 1204 1226 1204 1226 0.96

25 30 1.6 1.4e+02 3.3 0.1 2 23 1232 1254 1232 1254 0.95

26 30 5.3e-05 0.0048 17.4 0.2 1 23 1318 1341 1318 1341 0.96

27 30 0.016 1.4 9.6 3.0 1 21 1366 1386 1366 1387 0.94

28 30 0.46 41 5.0 1.3 2 23 1483 1505 1482 1505 0.94

29 30 0.27 24 5.7 0.2 2 23 1512 1534 1511 1534 0.94

30 30 1.1 1e+02 3.8 1.9 1 23 1545 1567 1545 1567 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	30	1.5e-05	0.0014	19.1	0.9	1	23	217	239	217	239	0.98
2	30	0.0084	0.76	10.4	3.7	1	23	262	285	262	285	0.96
3	30	0.00013	0.011	16.2	0.5	2	23	292	314	291	314	0.96
4	30	0.0018	0.16	12.6	0.1	1	21	335	355	335	356	0.95
5	30	0.0053	0.48	11.1	0.6	2	23	452	473	451	473	0.96
6	30	0.00037	0.033	14.7	1.3	1	23	479	502	479	502	0.97
7	30	0.00011	0.0099	16.4	0.1	1	23	569	592	569	592	0.96
8	30	0.022	2	9.1	0.4	1	23	598	621	598	621	0.96
9	30	0.058	5.2	7.8	0.8	1	23	634	656	634	656	0.97
10	30	3.3e-05	0.003	18.0	0.9	3	23	700	721	699	721	0.96
11	30	0.0012	0.11	13.1	0.9	2	23	781	804	780	804	0.95
12	30	2.9	2.6e+02	2.5	0.0	2	23	813	835	813	835	0.84
13	30	0.037	3.3	8.4	0.1	2	23	842	864	841	864	0.95
14	30	1.2e-05	0.0011	19.4	1.2	1	23	872	894	872	894	0.98
15	30	0.94	85	4.0	0.8	3	23	922	944	920	944	0.83
16	30	0.0002	0.018	15.6	3.3	1	23	947	970	947	970	0.97
17	30	0.002	0.18	12.4	0.4	2	23	977	999	976	999	0.96
18	30	0.00085	0.077	13.6	3.9	1	21	1023	1043	1023	1044	0.95
19	30	0.0025	0.23	12.1	1.8	2	23	1058	1079	1057	1080	0.93
20	30	0.41	37	5.1	1.4	1	23	1083	1106	1083	1106	0.94
21	30	0.013	1.1	9.9	0.9	2	23	1113	1136	1112	1136	0.92
22	30	2.8	2.6e+02	2.5	0.2	2	23	1144	1166	1144	1166	0.94
23	30	8.7	7.8e+02	1.0	0.0	2	23	1173	1195	1172	1195	0.88
24	30	0.21	19	6.0	2.7	2	23	1204	1226	1204	1226	0.96
25	30	1.6	1.4e+02	3.3	0.1	2	23	1232	1254	1232	1254	0.95
26	30	5.3e-05	0.0048	17.4	0.2	1	23	1318	1341	1318	1341	0.96
27	30	0.016	1.4	9.6	3.0	1	21	1366	1386	1366	1387	0.94
28	30	0.46	41	5.0	1.3	2	23	1483	1505	1482	1505	0.94
29	30	0.27	24	5.7	0.2	2	23	1512	1534	1511	1534	0.94
30	30	1.1	1e+02	3.8	1.9	1	23	1545	1567	1545	1567	0.92

Sequence Information

Coding Sequence: ATGGAGTCCAGGGAACGCTACCAGGAGCTCTGCAGACTATGCGCATCCTACGACGCCGTCAAGATGGACATCTTCGGTCAAGAGGGCAAGAACAGACAGCTCGTTGACAAGATACAAGCTTGTCTGCCGTTTAAGATTGCAGAAAATGATCGACTACCAAAATGCCTCTGTTATCGGTGTATGTACAATTTGGAAAATTTCTATGATTTTAGAACAGCATGTGTTAATGCAGTGGCTCTCTTGGAAAGATGTTTATCACCTTCAGAAGCGAATGGAGGTGTTACAACCATCTTGACGTACTGTAATGATTCAGAGTTTTTCGAAGGACGGAAAAGTATACCAGTGTTAATTCCAGAAGCTCCTATCGTAAATCCAAATGCTGCTTTAGGCACACCACCCAGATTGAATTCTGATGGAGAGGCTGATCATGAGACAGAAGAAATTGATAACAGTGGGACAGACGAAGCGACAGTCATGGACGACTCTGAAGATCGTCATTCAGAGGAGTATGAAATGGATATGGAGACAAATCCAAGTGATTTTTTGGAAATGACCTCGATAGTTGCAGAAGAACCTGAAGAATCAGGATTGAAACATCAGGATGTTTCCAATAGCTTATCAGAGCATACATCTCAACAACATGAAGTTTATGTTTGTTCCTTGTGCAGCAAAGCATTTAGTTCAAAGGGTCATTTGTCCTTGCATGCACGCATTCACGTTGGTGCTGGTGATGTGATTGGTGAAAAAGTTCTTACGGATGATCATACATCATACAAAAGGCCCTATCAGTGTGATCTCTGTCATAAATCATACTCCACCGCAAAACATCGTTGGGGTCATGTATCTACAACTCATAGAGGCCATCCGGCAGTGACGTGCGGTTATTGTTCCCGTATCTACTCAACCCGAACAAATTTGGAAGAACATATAAAATCACGTCATGCTGGTCTTCCAACACCTACGGGGGTTCCACTGAACAATGCCTATCGGCCAGAGAATAGGTATCAATGCAATGCTTGTGGGAAGGTTTGCACGGATGCTATGGAATTGAATCTTCATGGTAGGATTTGTACCGAAGGACAGAGACTAGATCTTTCAGGAAAAAACGAGATTAGTGATAATAAAGTTGCGGATAGTTCAGAAGCTTCAAGTATTGGAAGTGATGACGATGGCAAAGATTATAGAAGTGCGGAAGCTAAATTAGCGAAAAATCCTCAATTGACAATTTTAAAACAAGCATTAACAAAAGGGGATAGCCTTAAGCGAGATTTTGAAGACAAATTTACTACAAATTGCAAACCAAAAAAATTACCAAGGACAGAGCATACTGACTTTCAACATACTAAGAAATGGTACTGTGAATCGTGTCCTCAATGTTTTACTTCAGTTAATGATTTGAAAGAACACGAAGCAACTCACGATGCGGATAAGCCATTTATTTGTCTTTTATGTAAAAAAGACTTTTATCTTAAATCTTCTTTAAGCAGGCATATTCAAACGTTACATGGTGTTGATCCATGTCCTATGGTGGAAAGTGATAAATGTCTAAAGAAAATTGTTTCACATAATTGGAATGAATCTATGGATATCGATTCGTATGAGGGTAAAACCTCTTCTGAATTTCCATTGTCTCCAGATACAAATGCAGAAAATGAGGACGACCATGAGAGTGGACAAGAAAATCTCATTGAAATTGAAACTGTGTTTGTTTGTGAAATTTGTACTCGTGATTTTAATGACCGTGCATCTCTTTGGCTTCATATTCGTGCTACTCACAAAGAATTTGCAGCATTTGCATGTGGTGTTTGTTTAAAAATTTGTGCAGACAACACGCAACTTTTGAACCATGTGAATATGTATCACGGCGGCTCGAAATTACTACTTTCTGAACAAAGAAGGTACAGTTGTACTATTTGTGGTAGGCAACATGATTCCAGAAAAAAGTTAATTGCTCATGTATCCATACATAATGTGGATCCAAATTATGATCCTGCTACCTTTGTTCAGTTAAACAGTAATTATTATGGAGAGAACATCAACGGTAACGAAACTGTAGAACAAATGCTTGACTACGAAGAGGATAGCGATAAAGTGGACTGTTATATTTGTTATAAATCGTTTCCTAATGAAGATCATTTAATACGACATCAAAGAAATGCACACAGATCGGAACAACTAGTGCCAGCAGGTGATCCTTTAAATCCTTCGAGTTTAAACGGCGGTGGTAATAGAGCTCAATATCATCTCTTTTTCGTTTGTGAGCTTTGTGGGAGTTCACATCCTAGTAAATGGGAACGTTGGTTACATGTTAGTTCGTCTCATAGCAATGAATCAGCCATAAAATGTGATCGTGAAGATTGCGGTAAAATTTTTGCTACAAAATCTCTCAGAAACGAACATATTCAGCATCACGCAATTCAAGGTTCATCCCCAAATACTTGCGAAATTTGTGGTAAACTTTGGGGTAGTAGAGTTGATTATTGGAAGCATGTTATGGGCGTTCATTCGGATACCGTTCCATTAATTTGTGGTGTTTGCTTAAAAGTGTTTCCAAATGTTCTGCAACTGAGTACTCATGTAAGATCGAAACATTGGCCATTAACGAATGGTGACTTTAGCTGTGACATTTGTGGTAGACCGTATTCGAATAAATCCAAAATGTCCAGACATAGAAAAATCCATGGCTTTGAGGAAAGCTGTGAAAATGGGGCTGAAAATAGCGAGAATAAAGCAGAGGGACGAATGAGGGAAACAGAATTAAGTTGCGAGCTTTGTGCAGATTTGAAGTTTACTAGTTTAGAAAAATTATGTAATCATAGACGAATCGTTCATGGACTTTTCCCTTGCGATCTCTGTAATAAATGCTATGGAAGAACTTCACATTTATGGAAACATGTAAACAGAGTTCACAAAGGTCATGAAGATGTAACTTGCCCTTATTGTATGAAAACTAGTGCTTCAAAAGATCATTTAGCAGCACACATTTCAAAAATTCATAGATACGAACCTGATTCTAGAAAAGATGGGAAAGATAATAGGCAATTTAAAACCGAAGAAGTTAGTTTACATTATTGCGAAAAATGTAATAAAGGATTTCACAAGCGGTATCTATTGCGTAGACATATGAAAGGATGCCAGAATTACAGGAAAGACCCTGGTGCATTATTAACGAGGTGCAGAGCTTGTGAAAGAATATTTAAAGATCGTGCCAGTTTACAAAAGCATATCGAGAATCATCATAGCACATACACGTGTCATCTTTGTAATGAAACAATTACCTCAAAATTAGGGATTATGACGCATAACAGGGTGAAGCATATGGATCATCCAGATTTAACTTGTAATTTTGGATCTTGTAGGAAATTATTCAGAACTAAAGAAGATTTAGAAGCCCATAGAAAAGATCACAGATATCATACCACTCCTAACGTTTGTGATTTCTGCGGCGATACTGTTGAAAATAAGCTGAAGTTAAAAATGCACGTTTTATCTCTTCATCGCAATGAAATTGGTGTATCTTGTGGAGTGTGTTTAATACCAATGAAAGATCCGAAAGAACTTAAAAGTCACGTAGAAGAAGTTCATTCCAGCGTTCTTTCAAGACCCAATACGTGTCAAGTTTGTGGGAAACAATATGCTTCAAAATGGAAAGCGTTTGATCATACTAAGAAATGCCATGGAAAAGTATTTAGGACTTGCAAACAATGTCTAGCTGTTTTCACTGAAGATTCTGCAATTAGAGATCATTATGAAACAATACATAATATTCCCAAAGATCAACTTGCAGCATTTGAACATAGATTAGATATTGGGTCGAAAAACGAAGATTTTGGAATAGAGTCTCCTGATATAATAGTGAAAGAAGAACCAGAGGATTTAGAATATGAAGTAGATAGTAGATGCGATGAGGATTCTAGTGACTCAAAAAGGAGAAGGTCCTTAACGGACACCTACGATTGTGAAATGTGTCCGGAAATGTTTGTAAACAGCGATGCACTTTCAAAACATTATCGTAACATGCACAACACCGATCCAGAAAGAATGTTCAAAAGATTAAAACAGGACGAACAGAGAAGAATGCGTGGTAAACTGAATTTCTCTTGCAAGAATTGTAGGCGGCAATTTTGTACTAAAACATTATATTGGAACCATATTGCAACTTGCAGACGAAATATACGAAAAGGAGAGGAAAATTTATCTTTACAAAATGACATATTAAGCAGCCAAGAAGAATTTTTGAAGAATAATAATCAAATTAAGAAAGAAGAGCCTACATCAGATTTAAATATTCCTGATTTCAATCTTTTTGAAGATATAAATCTTCAACTCTCTGGTCAGAGACCTCTCCCGAATCTTATGCCACTCACTCAGAGGGCGAAATCTTCAATAAAATGTTCAAGAAAGGATTCCAGGAAAGTTTATGATGAATCAACAAATACAGAATGTGCTTGTGAAGTGTGTGGAAAACAATGGCCAGCAAAGAAACATTTATGGCAACATTTAATTCGTTTCCATCGGGCGGAAGCAGCAGTCACTTGCGGAGTATGTTTGAAACTTTGTAAAGATTATGATGATTTGGCAGAACATTTGAAAGCTGCGCACGAAGCGATATTGTCAACTGAAGGAAATAATTTTACATGTAAAATTTGCGGCAGGTATCACAATGCTCGTAGTAAATTGTTATTACACACAAGTATTCATATCGGCCATCCAGGTACTAGTACTTGGTGTCCAAAATGTCGGAAAAATATTACGGATGAAGCTGCACATTCGACTACGTGTAATACGAAGACGGAAGAAGGAGAACAAATGAAAAATAATGAAAAAGCAGGGGGAAGTCTAATAGCTGATGATGCGATAATTGAAGAAGTGGAAGAAGGGGATTTTGAATCTGAAGCAGAAGAAGAGGCAGATACAGAAGAATCAGAAAGTGGTAGTGGTACCGAAGCCGAAGAGGAACAAGAATCGGAGGATGGTTCTAGAGCAACCGGAGAAATTACTTACAATTCAGAGAGTGAGGATTCAGAAGAACTAGATAATTTAGAAATTGATGAAAAGAACATGGAGCATTATCCTTTAAAACATCTTGCAGAATCCAACGAAAGTACAGAAACAAAGAAACGCGGTGCAAATTTATCGGATGATGATGGACCTCCTGTTCTCAGTCCCATGATGCCTCTGCTTCCTGAGAATATGTCTGTAGAACAGCCGATAAGTCATAAACTAGGCCCTATAGTGCCTCTAACTGAGAAAGACATGTGCGATTTATCAGAGATTCGAAATCGATCCTCCCCGAAATCTATGAATCTATATGAAAAACACATATGTAACGACGATTCTCTAGAGTTGGAATCTGAAACATTTGCAAATCGAAGCGACGAAGATTTTGAGGATACGAAGAACGAATCTGATGAAAATAGCACCGAAGAAAATGAGGAAGAGAATGAGGATAATAACGAGGAGATTGAGGAAAACGATGAAATAGAATTAAACGAAGATGTAGAAGAATCCGGAGATAACGAGGAAATTGAGAAAAATGGGGACAGTGAACAGGTTGAAGATAACGAAGAGAATGAAGGGAACGGAGATATTGAAGAAATGGAAGAGAATGAAGGAAACGAAGGAATCGATGAGTCAGAAGAACACGAAGGAAACGAAGACATTGAAGAGACAGACGAAGAAAATGAGGAGAGAGAGGAAAACATGCAGTTGGATGATCTGGAAGGTGCTGTTCTAATGGTGACTGATGGGAATGAAATATTGATTCAGCAAGGAATATTAGAAGACGAGAATGAGAATTCAAACGAAGAATATGTTTATTCTGCGCTTAGGTACAGTACAGAAGAGGACAGCGACGATGCAAGGAAATGA
Protein Sequence: MESRERYQELCRLCASYDAVKMDIFGQEGKNRQLVDKIQACLPFKIAENDRLPKCLCYRCMYNLENFYDFRTACVNAVALLERCLSPSEANGGVTTILTYCNDSEFFEGRKSIPVLIPEAPIVNPNAALGTPPRLNSDGEADHETEEIDNSGTDEATVMDDSEDRHSEEYEMDMETNPSDFLEMTSIVAEEPEESGLKHQDVSNSLSEHTSQQHEVYVCSLCSKAFSSKGHLSLHARIHVGAGDVIGEKVLTDDHTSYKRPYQCDLCHKSYSTAKHRWGHVSTTHRGHPAVTCGYCSRIYSTRTNLEEHIKSRHAGLPTPTGVPLNNAYRPENRYQCNACGKVCTDAMELNLHGRICTEGQRLDLSGKNEISDNKVADSSEASSIGSDDDGKDYRSAEAKLAKNPQLTILKQALTKGDSLKRDFEDKFTTNCKPKKLPRTEHTDFQHTKKWYCESCPQCFTSVNDLKEHEATHDADKPFICLLCKKDFYLKSSLSRHIQTLHGVDPCPMVESDKCLKKIVSHNWNESMDIDSYEGKTSSEFPLSPDTNAENEDDHESGQENLIEIETVFVCEICTRDFNDRASLWLHIRATHKEFAAFACGVCLKICADNTQLLNHVNMYHGGSKLLLSEQRRYSCTICGRQHDSRKKLIAHVSIHNVDPNYDPATFVQLNSNYYGENINGNETVEQMLDYEEDSDKVDCYICYKSFPNEDHLIRHQRNAHRSEQLVPAGDPLNPSSLNGGGNRAQYHLFFVCELCGSSHPSKWERWLHVSSSHSNESAIKCDREDCGKIFATKSLRNEHIQHHAIQGSSPNTCEICGKLWGSRVDYWKHVMGVHSDTVPLICGVCLKVFPNVLQLSTHVRSKHWPLTNGDFSCDICGRPYSNKSKMSRHRKIHGFEESCENGAENSENKAEGRMRETELSCELCADLKFTSLEKLCNHRRIVHGLFPCDLCNKCYGRTSHLWKHVNRVHKGHEDVTCPYCMKTSASKDHLAAHISKIHRYEPDSRKDGKDNRQFKTEEVSLHYCEKCNKGFHKRYLLRRHMKGCQNYRKDPGALLTRCRACERIFKDRASLQKHIENHHSTYTCHLCNETITSKLGIMTHNRVKHMDHPDLTCNFGSCRKLFRTKEDLEAHRKDHRYHTTPNVCDFCGDTVENKLKLKMHVLSLHRNEIGVSCGVCLIPMKDPKELKSHVEEVHSSVLSRPNTCQVCGKQYASKWKAFDHTKKCHGKVFRTCKQCLAVFTEDSAIRDHYETIHNIPKDQLAAFEHRLDIGSKNEDFGIESPDIIVKEEPEDLEYEVDSRCDEDSSDSKRRRSLTDTYDCEMCPEMFVNSDALSKHYRNMHNTDPERMFKRLKQDEQRRMRGKLNFSCKNCRRQFCTKTLYWNHIATCRRNIRKGEENLSLQNDILSSQEEFLKNNNQIKKEEPTSDLNIPDFNLFEDINLQLSGQRPLPNLMPLTQRAKSSIKCSRKDSRKVYDESTNTECACEVCGKQWPAKKHLWQHLIRFHRAEAAVTCGVCLKLCKDYDDLAEHLKAAHEAILSTEGNNFTCKICGRYHNARSKLLLHTSIHIGHPGTSTWCPKCRKNITDEAAHSTTCNTKTEEGEQMKNNEKAGGSLIADDAIIEEVEEGDFESEAEEEADTEESESGSGTEAEEEQESEDGSRATGEITYNSESEDSEELDNLEIDEKNMEHYPLKHLAESNESTETKKRGANLSDDDGPPVLSPMMPLLPENMSVEQPISHKLGPIVPLTEKDMCDLSEIRNRSSPKSMNLYEKHICNDDSLELESETFANRSDEDFEDTKNESDENSTEENEEENEDNNEEIEENDEIELNEDVEESGDNEEIEKNGDSEQVEDNEENEGNGDIEEMEENEGNEGIDESEEHEGNEDIEETDEENEEREENMQLDDLEGAVLMVTDGNEILIQQGILEDENENSNEEYVYSALRYSTEEDSDDARK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00218574;
90% Identity: iTF_00233377;
80% Identity: -