Nmel005297.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Nomia melanderi
Gene Symbol
-
Assembly
GCA_003710045.1
Location
NW:1652791-1662371[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 30 4.4e-06 0.00027 20.3 1.0 1 23 216 238 216 238 0.98
2 30 0.0063 0.38 10.4 3.7 1 23 261 284 261 284 0.96
3 30 9.4e-05 0.0057 16.1 0.5 2 23 291 313 290 313 0.96
4 30 0.0021 0.13 11.9 0.6 2 21 335 354 334 355 0.92
5 30 0.0069 0.42 10.3 0.1 2 23 451 472 450 472 0.94
6 30 0.0021 0.13 11.9 0.6 1 23 478 501 478 501 0.92
7 30 8.3e-05 0.005 16.3 0.1 1 23 567 590 567 590 0.96
8 30 0.017 1 9.1 0.4 1 23 596 619 596 619 0.96
9 30 0.043 2.6 7.7 0.8 1 23 632 654 632 654 0.97
10 30 2.5e-05 0.0015 17.9 0.9 3 23 698 719 697 719 0.96
11 30 0.0012 0.071 12.7 1.0 2 23 779 802 778 802 0.95
12 30 2.2 1.3e+02 2.4 0.0 2 23 811 833 811 833 0.84
13 30 0.07 4.2 7.1 0.1 2 23 840 862 839 862 0.95
14 30 9.1e-06 0.00055 19.3 1.2 1 23 870 892 870 892 0.98
15 30 0.57 34 4.2 3.7 2 23 919 942 918 942 0.94
16 30 0.00015 0.0089 15.5 3.3 1 23 945 968 945 968 0.97
17 30 0.00044 0.027 14.0 0.6 2 23 975 997 974 997 0.96
18 30 0.00064 0.039 13.5 3.9 1 21 1021 1041 1021 1042 0.95
19 30 0.0019 0.11 12.0 1.8 2 23 1056 1077 1055 1078 0.93
20 30 0.31 19 5.1 1.4 1 23 1081 1104 1081 1104 0.94
21 30 0.074 4.5 7.0 0.9 3 23 1112 1134 1110 1134 0.87
22 30 2.1 1.3e+02 2.4 0.2 2 23 1142 1164 1142 1164 0.94
23 30 2.7 1.6e+02 2.1 0.0 2 23 1171 1193 1170 1193 0.91
24 30 0.16 9.6 6.0 2.7 2 23 1202 1224 1202 1224 0.96
25 30 6.6 4e+02 0.9 0.1 2 23 1230 1252 1229 1252 0.90
26 30 5.2e-05 0.0031 16.9 0.2 1 23 1313 1336 1313 1336 0.96
27 30 0.0032 0.2 11.3 2.5 1 21 1361 1381 1361 1382 0.94
28 30 0.35 21 4.9 1.3 2 23 1486 1508 1485 1508 0.94
29 30 0.56 34 4.2 0.5 2 23 1515 1537 1514 1537 0.94
30 30 3.3 2e+02 1.8 2.6 1 23 1548 1570 1548 1570 0.92

Sequence Information

Coding Sequence
ATGGAGCCCAGGGAACGCTACCAGGAACTCTGCAGACTTTGCGCATCCTACGACGCCGTCAAGATGGACATCTTCGGTCAAGAGGGCAAGAATAGACAGCTTGTTGACAAAATACAAGCTTGCCTACCGTTTAAGattGCAGAAGATGATCGACTACCGAAATGCCTCTGTTATCGATGCATGtacaatttggaaaatttctaTGATTTTAGAACAGCATGCGTTAATGCAGTGGCCCTTTTGGAAAGATGTTTACCATCCTCGGAAAAGGTTGAGGGTGTTATGACCACATTAAGATACTGCAATGACTCCGAACACTTGAAGCGAAAGGAAAGTATACCAATACTGATCCCAGAGGCACCTATTGTGAATCCTAATGCTGCCTTAGGTACACCACCTAGATTAAATTCTGATGGAGAGGCAGAAACTGAAGATGTTGTCAATAATAGTGGCACTGATGAAGcAACAATAGTGGATGACTCTGACGATCATCGTTCAGAAGAATACGAAATGGATATGGAAACAAATCCAAGTGATTTTTTGGAGATGACTTCAATAGTTACAGAAGAGCCTGAAGAGTCAGAGTTGAAACATCAAGAACATCCTGCTAACGTCTCAGAGCATATATCACAACAACACGAAGTTTATGTTTGTTCCTTGTGCAACAAAGCATTCAGTTCCAAGGGTCATTTATCTTTGCACGCGCGTATTCATGTTGGGGCTGGTGACGTAATTGGCGAAAAAGTTCTTACGGACGATCACACTTCTTACAAGAGACCTTATCAATGTGATCTTTGTCATAAATCTTATTCAACTGCGAAGCATCGTTGGGGTCATGTTTCAACAACTCATAGAGGCCACCCGGCAGTAACATGCGGTTATTGTTCCCGTATCTACTCAACCCGAACAAATTTGGAAGAACATATAAAATCACGTCACGCTGGTCTTCCAACACCTTTGGAAGTTCCTGTGAACAATACCTATCGACCAGAAAACAGATGTCAGTGCAATGTTTGCGGAAAGATTTGTACTGATGCTATGGAATTGAATTTGCATGGCCGGATTTGTATTGAAGAACAAAGATCAGATTTTCTAGCTAGAAGTGAGAACAGGGATACTAAAATTGTGGACAGTACTGAAGGATCAAGTATCGGCAGTGATGACGATAGCAAGGATTATAGaaGTGCAGAGGCAAAGTTGGCTAAAAATCCTCAATTAACAATCTTGAAACAAGCACTAATGAAAGGTGATAGTCTTAAACGAGATTTCGAAGATAAATTCACGACAAATTGTAAACCAAAAAAACTGCCAAAAACAGAAAACATAGATGTTACAAGCGATAAAAAGTGGTATTGCGAATCTTGTCCTCAATTTTTCACCTCggtcgaaaatttgaaagaacaTGAAGCAATTCATGACGCCGACAAGCCCTATATctgtattttatgtaaaaaagaCTTTGTTCTTAAGTCTTCCTTGAGTAGACATATTCAAACACTACATGGAGTTGATCCATGTCCTATTGTAGAAAGCgataaatgtttaaagaaaattctttcgcGAAATTGGAATGAATCTATGGATTTTGATTATGAACGAAAAACTTCCGAATTTCCATTATCCCCAGAGACGAATgttgaaaatgaagaagaagatcATGAAAGTGGACAGGAAAAtcttattgaaattgaaactgtATTTGTTTGTGAAATTTGTACTCGTGATTTTAATGATCGCGCTTCGCTTTGGCTTCACATTCGAGCTACTCACAAAGAATTCGCAGCATTTGCTTGCGGTGTTTGCTTGAAAATTTGTGCAGACAATACACAACTTCTGAATCATGTAAATATGTATCATGGAGTATCAAAATTGCTACTCTCTGAACAAAGAAGGTATAGTTGTACCATTTGTGGCAGGCAACATGACTctagaaagaaattaattgcgCACGTATCTATACATAACGTTGATCCAAAATACGATCCAGCAACCTTTGTAcaattaaatagtaattattatggAGAGAATATTAATGGTAACGAAACTACAGAAACAATGCTTGATTATGAAGAAGAAGGGGACAAAGTAGATtgttatatttgttacaaatCATTTCCAAATGAAGATCATTTAATACGGCATCAAAGAAATGCGCACAGGTCTGAACCATTAATGGCAGCAGGAGACTCTTTGAATCCATCCAATTTAAATGGCGGTGGAAATAGAGCTCAATACCACTTGTTCTTTGTTTGTGAACTTTGTGGAAGTTCACATCCTAGTAAATGGGAACGTTGGTTACACGTCAGTTCTTCTCACGCTAATGAACCAACTATAAAATGTGATCGTGATGACTGTGGAAAAATCTTTGCTACAAAGTCTCTTAAGAACGATCACATTCAACATCACGCAATTCAAGGCCCTTCGCCAAATACTTGTGAAATTTGTGGTAAACTTTGGGGTAGCAGAGTGGATTATTGGAAGCACGTTATGGGTGTCCATTCAGACACTGTCCCATTAATTTGTGGTGTTTGTCTAAAAGTGTTTCCGAATGTGTTACAATTAAGTAGTCACGTTAAATCGAAACATTGGCCATTAACGAATGGTGATTTCAGTTGTGATATATGTGGAAGACCGTATTCAAACAAATCAAAAATGTCTAGACATAGAAAGATTCATGGTTTCGAAGACAGTTGTGACAATGGaatagaaaacaatgaaagCAAAGCAGATGGACGAATCAGAGAAAGCGAATTAAGCTGTGAACATTGTTCGGATTTGAAATTTACTAGTTTAGAGAAGTTATGTAATCACAGACGAATCGTTCATGGTCTTTTCCCTTGCGATCTCTGTAATAAATGCTACGGTAGAACCTCGCATTTATGGAAACATGTTAATAGAGTTCATAAAGGCCATGAAGACGTTACATGTCCTTATTGCTTAAAAACCAGCGCTTCGAAAGATCATTTGGCCACTcacatttctaaaattcatAGATACGAGCCTGATTCTAGAAAAGAGGGGAAAGATAATAGGCAGTTCAAGACTGAGGAAGTTAGTTTACATTATTGTGAGAAATGTAATAAAGGATTTCACAAACGATATCTGTTACGTAGGCATATGAAGGGATGCCAGAATTATAGAAAGGATCCCGGTACGTTGCTTACAAGATGCAGAGCTTGCGAAAGAATTTTCAAAGACCGTGCTAGTTTACAAAAACATATTGAAAATCACCATAGTACGTACACTTGTCATCTTTGCAATGAGACCATCACTTCAAAGTTAGGAATTATGACACATAATAGAGTGAAGCATATGGATCACCCAGATTTGACCTGTAGTTTCGGAGCttgcagaaaattatttaggACAAAGGAAGATTTGGAATCTCACAAGAAAGACCATAGATATCACACGAATCCTAATGTCTGCGATTTTTGTGGCGACACTGttgagaataaattaaaattaaaaatgcatgTACTGTCTCTTCATCGTAATGAAATTGGTGTATCGTGTGGAGTATGTTTAATCCCAATGAAAGATCCGAAAGAACTTAAGAGTCATGTAGAAAAAGTTCATTCCAGCGTTCTTTTAAGACCTAATACCTGTCAAGTATGTGGTAAACAGTATGCTTCAAAATGGAAAGCTTTTGATCACACTAAAAAATGTCATGGCAAAGTTTTCCAGACTTGCAAACAATGTTTAGCTGTTTTCACAGAAGATACCGCTATTAGAGATCATTATGAGATGGTGCATAATGTTCCAAAAGATCAACTTGCAGCATTTGAATACAGATTAGATATTGGATCGAAGAACGAAGATTTTGAAATGGAGTCTCCAGATATTGTTATCAAAGAAGAATTAGAAGACATGGAGTATGATCTTTGTGATGAGGACTCTAGTGATTCGAAAAGAAGAAGATCATTAACTGATACATTTGATTGTGAAATGTGCCCTGAGATGTTTGTGAATAGTGACGCTCTGTCAAAGCATTATCGTAATATGCATAATACAGATCCAGAAAGAATGTTTAAGAGACTGAAACAGGAAGAACAAAGAAGAATGCGTGGAAAGATAAGCTTcgtttgtaaaaattgtaaaagacAATTCTGTACAAAAACACTATATTGGAACCATATTGCTACATGTAGAAGAAATACTGCGCGAAAAGAAGAAGAACATCTACCTTTGCGAAATGATATATTGGATAATCAAGCAAGCGTACTTGATAATCGggaagaaattttgaaaaataataatcaaataaaaaaagaagaaagtacatcaaatttgaatattcctgACTTCAATCTTTTCgaagatataaattttcaattatcggGTCAGAGGCCACTTCCAAATCTTATGCCGTTATCTCAGAGgGTGAAATCATCAATGAAATGTTCAAGGAAAGATTCTAGGAAAGTGTATGATGAATCAACGAATACGGAATGTGCATGCGAAGTTTGTGGAAAGCAGTGGCCAGCAAAGAAACATTTGTGGCAACATTTAATTCGTTTCCATCGAGCTGAGGCTGCAGTCACCTGTGGAGTGTGCTTGAAACTCTGCAAAGATTATAATGATTTAGCAGAGCATTTGAAAGCCACGCATGCTGCAATCCTTTCTTGCGAAGGGAATAACTTTACATGTAAAACTTGTGGCAGATATCACAATGCAcgcagtaaattattattacacacaAGTATTCACATTGGTCAtgcaaataatgaaacaacatGTCCAAAGTGTTACAAGATTATTACTGACGAACCTGATCATTCTAATACTTGCACTGGAAAgacagaagaagaaggagaacatttggaaaatgagaaaaaaccAGAAgGAAGCTTGATAGCGGATGATGCAATGATAGAAGAAGTGGAGGAAGGAGACTTTGAATCTGAGGCAGAAGAAGCAGATTCAGCAGAATCAGATAGTGGTAGTAGTACGGAGgcagaagaggaaaatgaTTCTGAGGGAGAATCCAGAGCCACAGGAGAAATTACGTACAATTCAGATAGTGATGATTCCGTAGATTTGGTCAATTTAGAAATGCAGAAGAATATGCAACGGTTTGGTTTAGATGGTCTTCAGAAACTTGAAGATACAGaaGCAGAGAAGAATGATGTTGATTTGTCagatgatgacgatgatgatgatgacgatgacgagGACGATGATGATGGGCCTCCGGTGCTTAGTCCTATAATGCCTATGCTTCCTGAAAACATATCTCAAGAACAAACGATAGGCCACAAAGTTGATTCAGTGGTGACACTAACAGAtaaagaaatggaaatttgtaatttggcAGGAATACAAAGTCAGTCCTCTTCTAAATCAGcgaatttctatgaaaaggGCTTGTCTACCAACGAATCGATAGATTTTGAATCTGAAACGTTTACAAATCGAAGTGACGAGGAATATGAAGGCACGAGACATGAATATGATGAAAACTCTATAGAGGAGAATGAGGAAGAAAATGAAGACAATGAGGGCAACGAAGAGCAcgaggaaaacgaagaaaacaaagaaattgaacaaaacgaggaaaatgaagaaaacgaCATGACGATAAATGAAGACAGCGAAGAAAATGAATCAAACGaggaaattgaagaaaatgaagacagtgaagagaatgaagaaaatgaagaaaatgaagaaaatgaaggaaatgaagaaaatgaagaaaatgatgaaattgatgaaattgatgaaattgaagaaaatgaagaaaatgatgaaattgaagagaacgaagaaaacgaagaGAATGAAAAGATCGAAGAGGATGAAGAGgacgaagaagacgaagagaATGAAGAGAATGAGGAGAATGAGGAGAATGAGGAGAATGAGGAGAATGAGGAGAATGAGGAGAATGAGGAGAATGAGGAGAATGAAGAGAATGAAGAGATTGAAGGGAATGAAGAGAATTATGAGGATGATGAGAATgacgaaaatgaagaaaaggtAGAAGGTATGGAGTTGGACGATTTAGAAAATGCTGTGCTAATGGTAACTgaaggaaatgaaatattgatacagcaaaatataTTAGAAGATGGAAACGAAAATGCAAACCAAACTTACGTTTACTCCACGCTTGCATACAGTATGGAAGAAGATAGTGATGGTGCAGGAAAATGA
Protein Sequence
MEPRERYQELCRLCASYDAVKMDIFGQEGKNRQLVDKIQACLPFKIAEDDRLPKCLCYRCMYNLENFYDFRTACVNAVALLERCLPSSEKVEGVMTTLRYCNDSEHLKRKESIPILIPEAPIVNPNAALGTPPRLNSDGEAETEDVVNNSGTDEATIVDDSDDHRSEEYEMDMETNPSDFLEMTSIVTEEPEESELKHQEHPANVSEHISQQHEVYVCSLCNKAFSSKGHLSLHARIHVGAGDVIGEKVLTDDHTSYKRPYQCDLCHKSYSTAKHRWGHVSTTHRGHPAVTCGYCSRIYSTRTNLEEHIKSRHAGLPTPLEVPVNNTYRPENRCQCNVCGKICTDAMELNLHGRICIEEQRSDFLARSENRDTKIVDSTEGSSIGSDDDSKDYRSAEAKLAKNPQLTILKQALMKGDSLKRDFEDKFTTNCKPKKLPKTENIDVTSDKKWYCESCPQFFTSVENLKEHEAIHDADKPYICILCKKDFVLKSSLSRHIQTLHGVDPCPIVESDKCLKKILSRNWNESMDFDYERKTSEFPLSPETNVENEEEDHESGQENLIEIETVFVCEICTRDFNDRASLWLHIRATHKEFAAFACGVCLKICADNTQLLNHVNMYHGVSKLLLSEQRRYSCTICGRQHDSRKKLIAHVSIHNVDPKYDPATFVQLNSNYYGENINGNETTETMLDYEEEGDKVDCYICYKSFPNEDHLIRHQRNAHRSEPLMAAGDSLNPSNLNGGGNRAQYHLFFVCELCGSSHPSKWERWLHVSSSHANEPTIKCDRDDCGKIFATKSLKNDHIQHHAIQGPSPNTCEICGKLWGSRVDYWKHVMGVHSDTVPLICGVCLKVFPNVLQLSSHVKSKHWPLTNGDFSCDICGRPYSNKSKMSRHRKIHGFEDSCDNGIENNESKADGRIRESELSCEHCSDLKFTSLEKLCNHRRIVHGLFPCDLCNKCYGRTSHLWKHVNRVHKGHEDVTCPYCLKTSASKDHLATHISKIHRYEPDSRKEGKDNRQFKTEEVSLHYCEKCNKGFHKRYLLRRHMKGCQNYRKDPGTLLTRCRACERIFKDRASLQKHIENHHSTYTCHLCNETITSKLGIMTHNRVKHMDHPDLTCSFGACRKLFRTKEDLESHKKDHRYHTNPNVCDFCGDTVENKLKLKMHVLSLHRNEIGVSCGVCLIPMKDPKELKSHVEKVHSSVLLRPNTCQVCGKQYASKWKAFDHTKKCHGKVFQTCKQCLAVFTEDTAIRDHYEMVHNVPKDQLAAFEYRLDIGSKNEDFEMESPDIVIKEELEDMEYDLCDEDSSDSKRRRSLTDTFDCEMCPEMFVNSDALSKHYRNMHNTDPERMFKRLKQEEQRRMRGKISFVCKNCKRQFCTKTLYWNHIATCRRNTARKEEEHLPLRNDILDNQASVLDNREEILKNNNQIKKEESTSNLNIPDFNLFEDINFQLSGQRPLPNLMPLSQRVKSSMKCSRKDSRKVYDESTNTECACEVCGKQWPAKKHLWQHLIRFHRAEAAVTCGVCLKLCKDYNDLAEHLKATHAAILSCEGNNFTCKTCGRYHNARSKLLLHTSIHIGHANNETTCPKCYKIITDEPDHSNTCTGKTEEEGEHLENEKKPEGSLIADDAMIEEVEEGDFESEAEEADSAESDSGSSTEAEEENDSEGESRATGEITYNSDSDDSVDLVNLEMQKNMQRFGLDGLQKLEDTEAEKNDVDLSDDDDDDDDDDEDDDDGPPVLSPIMPMLPENISQEQTIGHKVDSVVTLTDKEMEICNLAGIQSQSSSKSANFYEKGLSTNESIDFESETFTNRSDEEYEGTRHEYDENSIEENEEENEDNEGNEEHEENEENKEIEQNEENEENDMTINEDSEENESNEEIEENEDSEENEENEENEENEGNEENEENDEIDEIDEIEENEENDEIEENEENEENEKIEEDEEDEEDEENEENEENEENEENEENEENEENEENEENEENEEIEGNEENYEDDENDENEEKVEGMELDDLENAVLMVTEGNEILIQQNILEDGNENANQTYVYSTLAYSMEEDSDGAGK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00218574;
90% Identity
-
80% Identity
-