Basic Information

Insect: Bombus superbus
Gene Symbol: -
Assembly: GCA_014737385.1
Location: JACXIK010000040.1:7137977-7147268[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 30 1.6e-05 0.0011 19.0 0.9 1 23 217 239 217 239 0.98

2 30 0.0087 0.6 10.4 3.7 1 23 262 285 262 285 0.96

3 30 0.00013 0.0089 16.2 0.5 2 23 292 314 291 314 0.96

4 30 0.00055 0.038 14.2 0.0 1 21 335 355 335 356 0.95

5 30 0.0076 0.52 10.6 1.1 2 23 452 473 451 473 0.96

6 30 0.014 0.96 9.8 1.2 2 23 480 502 479 502 0.91

7 30 0.00011 0.0078 16.3 0.1 1 23 569 592 569 592 0.96

8 30 0.023 1.6 9.1 0.4 1 23 598 621 598 621 0.96

9 30 0.059 4.1 7.8 0.8 1 23 634 656 634 656 0.97

10 30 3.4e-05 0.0024 18.0 0.9 3 23 701 722 700 722 0.96

11 30 0.0012 0.084 13.1 0.9 2 23 782 805 781 805 0.95

12 30 3 2.1e+02 2.4 0.0 2 23 814 836 814 836 0.84

13 30 0.038 2.6 8.4 0.1 2 23 843 865 842 865 0.95

14 30 1.2e-05 0.00086 19.4 1.2 1 23 873 895 873 895 0.98

15 30 1.3 86 3.6 0.5 8 23 929 945 923 945 0.87

16 30 0.0002 0.014 15.6 3.3 1 23 948 971 948 971 0.97

17 30 0.0021 0.14 12.4 0.4 2 23 978 1000 977 1000 0.96

18 30 0.00088 0.06 13.6 3.9 1 21 1024 1044 1024 1045 0.95

19 30 0.0026 0.18 12.1 1.8 2 23 1059 1080 1058 1081 0.93

20 30 0.42 29 5.1 1.4 1 23 1084 1107 1084 1107 0.94

21 30 0.013 0.9 9.9 0.9 2 23 1114 1137 1113 1137 0.92

22 30 2.9 2e+02 2.5 0.2 2 23 1145 1167 1145 1167 0.94

23 30 9 6.2e+02 0.9 0.0 2 23 1174 1196 1173 1196 0.88

24 30 0.22 15 6.0 2.7 2 23 1205 1227 1205 1227 0.96

25 30 1.7 1.1e+02 3.2 0.1 2 23 1233 1255 1233 1255 0.95

26 30 5.2e-05 0.0036 17.4 0.1 1 23 1316 1339 1316 1339 0.96

27 30 0.048 3.3 8.1 3.4 1 21 1364 1384 1364 1385 0.93

28 30 0.48 33 4.9 1.3 2 23 1481 1503 1480 1503 0.94

29 30 0.27 19 5.7 0.2 2 23 1510 1532 1509 1532 0.94

30 30 1.1 79 3.7 1.9 1 23 1543 1565 1543 1565 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	30	1.6e-05	0.0011	19.0	0.9	1	23	217	239	217	239	0.98
2	30	0.0087	0.6	10.4	3.7	1	23	262	285	262	285	0.96
3	30	0.00013	0.0089	16.2	0.5	2	23	292	314	291	314	0.96
4	30	0.00055	0.038	14.2	0.0	1	21	335	355	335	356	0.95
5	30	0.0076	0.52	10.6	1.1	2	23	452	473	451	473	0.96
6	30	0.014	0.96	9.8	1.2	2	23	480	502	479	502	0.91
7	30	0.00011	0.0078	16.3	0.1	1	23	569	592	569	592	0.96
8	30	0.023	1.6	9.1	0.4	1	23	598	621	598	621	0.96
9	30	0.059	4.1	7.8	0.8	1	23	634	656	634	656	0.97
10	30	3.4e-05	0.0024	18.0	0.9	3	23	701	722	700	722	0.96
11	30	0.0012	0.084	13.1	0.9	2	23	782	805	781	805	0.95
12	30	3	2.1e+02	2.4	0.0	2	23	814	836	814	836	0.84
13	30	0.038	2.6	8.4	0.1	2	23	843	865	842	865	0.95
14	30	1.2e-05	0.00086	19.4	1.2	1	23	873	895	873	895	0.98
15	30	1.3	86	3.6	0.5	8	23	929	945	923	945	0.87
16	30	0.0002	0.014	15.6	3.3	1	23	948	971	948	971	0.97
17	30	0.0021	0.14	12.4	0.4	2	23	978	1000	977	1000	0.96
18	30	0.00088	0.06	13.6	3.9	1	21	1024	1044	1024	1045	0.95
19	30	0.0026	0.18	12.1	1.8	2	23	1059	1080	1058	1081	0.93
20	30	0.42	29	5.1	1.4	1	23	1084	1107	1084	1107	0.94
21	30	0.013	0.9	9.9	0.9	2	23	1114	1137	1113	1137	0.92
22	30	2.9	2e+02	2.5	0.2	2	23	1145	1167	1145	1167	0.94
23	30	9	6.2e+02	0.9	0.0	2	23	1174	1196	1173	1196	0.88
24	30	0.22	15	6.0	2.7	2	23	1205	1227	1205	1227	0.96
25	30	1.7	1.1e+02	3.2	0.1	2	23	1233	1255	1233	1255	0.95
26	30	5.2e-05	0.0036	17.4	0.1	1	23	1316	1339	1316	1339	0.96
27	30	0.048	3.3	8.1	3.4	1	21	1364	1384	1364	1385	0.93
28	30	0.48	33	4.9	1.3	2	23	1481	1503	1480	1503	0.94
29	30	0.27	19	5.7	0.2	2	23	1510	1532	1509	1532	0.94
30	30	1.1	79	3.7	1.9	1	23	1543	1565	1543	1565	0.92

Sequence Information

Coding Sequence: ATGGAGTCCAGGGAACGCTACCAGGAGCTCTGCAGACTATGCGCATCCTACGACGCCGTCAAGATGGACATCTTCGGTCAAGAGGGCAAGAACAGACAGCTCGTTGACAAGATACAAGCTTGTCTGCCGTTTAAGATTGCAGAAAATGATCGACTACCGAAATGCCTCTGTTATCGGTGTATGTACAATTTGGAAAATTTCTATGATTTTAGAACAGCATGTGTTAATGCAGTGGCTCTCTTGGAAAGGTGTTTATCACCTTCGGAATCGAATGGAGATGTTACAACCATCTTGACGTGCTGTAACGATTCTGAGTTTTTCAAAGGACGGAAAAGTATACCAGTGTTAATTCCGGAAGCTCCTATCGTAAATCCAAACGCTGCTTTAGGCACACCACCCAGATTGAATTCTGATGGAGAGGCTGATCACGAGACAGAAGAAATTGATAACAGTGGGACAGATGAAGCAACAGTCATGGATGACTCTGAAGATCGTCATTCAGAGGAATATGAAATGGATATGGAAACAAATCCAAGCGATTTTTTGGAAATGACCTCGATAGTCGCAGAAGAACCTGAAGAATCAGAATTGAAACATCAGGGTGTTTCCAGTAACTTATCAGAGCATACATCTCAACAACATGAAGTTTATGTTTGTTCCTTGTGCAGCAAAGCATTTAGTTCAAAGGGTCATTTGTCCTTGCACGCACGCATTCATGTTGGTGCCGGTGATGTGATTGGCGAAAAAGTTCTTACGGATGATCATACATCATATAAAAGGCCCTATCAGTGTGATCTTTGTCATAAATCATACTCCACTGCAAAACATCGTTGGGGTCATGTATCCACAACTCACAGAGGCCATCCGGCAGTGACGTGCGGTTATTGTTCTCGGATCTACTCAACCCGAACAAATTTGGAAGAACATATAAAATCACGTCATGCTGGTCTTCCAGCACCTACAGAGGTTCCACTGAACAATGCCTATCGGCCAGAAAGTAGATACCAATGCAATGCTTGTGGGAAGATTTTCACGGATGCTATGGAACTGAATCTTCATGGTAGGATTTGCACCGAAGGACAGAGATTAGATCTTCCAGGGAAAAACGAGATTAGGGATAATAAAGTTGTGGATAGTTCAGAAGCTTCAAGTATCGGAAGCGATGATGATGGCAAAGATTATAGAAGCGCAGAAGCTAAATTAGCGAAAAATCCTCAATTAACAATTTTAAAACAAGCATTAACGAAAGGGGATAGTCTTAAGCGAGATTTTGAAGACAAATTTACTACAAATTGCAAACCAAAAAAATTACCGAAAACAGAGCATACTGACTTTCAACATACTAAGAAATGGTATTGTGAATCCTGTCCTCAATGTTTTACTTCAGTTAATGATTTAAAAGAACACGAAACAACTCACGATGCGGATAAGCCATTTATTTGTATTTTGTGTAAAAAAGACTTTTTCCTTAAATCTTCTTTAAGCAGGCATATTCAAACGTTACATGGTGTCGATCCATGTCCTATGGTGGAAAGCGATAAATGTCTAAAGAAAATTGTCTCACATAATTGGAATGAATCTATGGATCTTGATTCGTATGAGGGTAAAACCTCTTCTGAATTTCCATTATCTCCGGATACAAATGCAGAAAACGAAGAAGACCATGAGAGTGGACAAGAAAATCTCATTGAAATTGAAACTGTGTTTGTTTGTGAAATTTGTACTCGTGATTTCAATGATCGTGCGTCTCTTTGGCTTCATATTCGTGCTACTCACAAAGAATTTGCAGCATTTGCATGCGGTGTTTGTTTAAAAATTTGTGCCGACAACACGCAACTTTTGAACCACGTAAATATGTACCATGGTGGCTCGAAATTATTACTTTCCGAACAAAGGAGGTACAGTTGTACTATTTGTGGTAGGCAACACGATTCCAGAAAAAAATTAATTGCTCATGTATCCATACATAATGTGGATCCAAATTATGATCCTGCTACCTTTGTTCAGTTAAATAGTAATTATTATGGAGAGAATGTTAACGGTAACGAAACTGCGGAACAAATGCTTGACTACGAAGAGGATGGAGTGGATAAAGTGGACTGTTATATTTGTTATAAATCGTTTCCTAATGAAGATCATTTAATACGACATCAAAGAAATGCACACAGATCGGAACAACTAGTGCCAGCAGGAGATCCTTTAAATCCTTCGAGTTTAAACGGTGGTGGTAATAGAGCTCAATATCATCTCTTTTTCGTTTGCGAACTTTGTGGGAGTTCACATCCTAGTAAATGGGAACGTTGGCTACATGTTAGCTCATCTCATAGCAACGAATCGGCTATAAAATGTGATCGCGAAGACTGTGGTAAAATTTTTGCTACTAAATCTCTCAGAAACGAACATATTCAACATCACGCAATTCAAGGTTCATCCCCAAATACTTGTGAAATTTGTGGTAAACTTTGGGGTAGTAGAGTTGATTATTGGAAGCATGTTATGGGCGTTCATTCGGATACTGTTCCATTAATTTGCGGTGTCTGTTTAAAAGTGTTCCCAAATGTTTTGCAACTGAGTACTCATGTAAGATCGAAACATTGGCCATTAACGAATGGTGACTTTAGCTGTGACATTTGTGGTAGACCATATTCGAATAAATCCAAAATGTCCAGACATAGAAAGATCCATGGTTTTGAGGAAAGCTGTGAAAATGGGGCTGAAAATAGCGAGAATAAAGTAGACGGACGAATGAGGGAAACAGAATTAGGTTGCGAGCTTTGCGCAGATTTGAAGTTCACTAGTTTAGAAAAGTTATGTAATCATAGACGAATCGTTCATGGACTTTTCCCTTGCGATCTCTGTAATAAATGCTATGGAAGAACTTCACATTTATGGAAACATGTAAACAGAGTTCACAAAGGTCACGAAGATGTAACTTGCCCATACTGTATGAAAACTAGTGCTTCAAAAGACCATTTAGCAGCACACATTTCAAAAATTCATAGATACGAACCTGATTCTAGAAAAGATGGGAAAGATAATAGACAATTCAAAACCGAAGAAGTTAGTTTACATTATTGCGAAAAATGTAATAAAGGATTTCACAAGCGGTATCTATTGCGTAGACATATGAAAGGATGTCAGAATTACAGGAAAGACCCTGGAGCATTATTAACGAGATGTAGAGCTTGCGAAAGAATATTTAAAGACCGTGCCAGTCTACAAAAGCATATCGAGAATCATCATAGCACATACACGTGTCACCTTTGTAACGAAACAATTACCTCAAAATTAGGAATTATGACGCATAACAGGGTGAAGCATATGGATCATCCAGATTTAACTTGCAATTTTGGATCTTGCAGGAAATTATTCAGAACTAAAGAAGATTTAGAAGCCCATAGAAAAGATCACAGATATCATACCACTCCTAACGTTTGTGATTTCTGCGGTGATACTGTTGAAAATAAACTGAAGTTAAAAATGCACGTTTTATCTCTTCATCGCAATGAAATTGGCGTATCTTGTGGAGTGTGTTTAATACCAATGAAAGATCCAAAAGAACTTAAAAGTCACGTGGAAGAAGTTCATTCCAGTGTTCTTTCAAGACCCAATACGTGTCAAGTTTGCGGGAAACAATATGCTTCAAAATGGAAAGCGTTTGATCATACTAAAAAATGCCACGGGAAAGTATTTAGAACTTGTAAACAATGTCTAGCTGTTTTCACTGAAGATTCTGCAATTAGAGATCATTATGAAACAATACATAATATTCCCAAAGATCAACTTGCAGCGTTCGAACATAGATTAGACATTGGGTCGAAAGATTTTGAAATAGAGTCCCCTGATATAATAGTGAAAGAAGAACCAGAGGATTTAGAATATGAAGTAGATATGTGCGATGAAGATTCTAGCGACTCAAAAAGGAGACGATCCTTAACAGATACCTACGATTGTGAAATGTGTCCAGAAATGTTTGTAAATAGCGACGCACTTTCGAAACATTATCGTAACGTGCACAATACCGATCCAGAAAGAATGTTTAAAAGACTAAAACAGGATGAACAGAGAAAAATGCGTGGTAAACTGAATTTCTTTTGTAAGAATTGCAGGCGACAATTTTGCACTAAAACATTATATTGGAACCATATCGCGACCTGCAGAAGAAATATACGAAAAGGAGAGGAACATTTGTCCTTACGAAATGACATGCTAAGTAGTCAGGAAGAATTTTTGAAAAATAATAATCAAATTAAGAAAGAAGAGCCTACATCAAATTTAAATATTCCCGATTTCAATCTTTTTGAAGATATAAATCTTCAACTCTCTGGTCAGAGACCTCTCCCGAATCTTATGCCAATCACTCAGAGGGCGAAATCTTCGATAAAATGTTCAAGAAAGGATTCCAGAAAAGTTTATGACGAATCAACGAATACAGAATGCGCTTGTGAAGTGTGTGGAAAACAATGGCCAGCAAAGAAACATTTATGGCAACATTTAATTCGTTTTCATCGAGCGGAAGCGGCAGTCACCTGCGGAGTATGTTTGAAACTTTGTAAAGATTATGATGATTTGGCGGAACATTTGAAAGCTGCACACGAAGCGATCCTATCAACCGAAGGAAACAATTTTACGTGTAAAATTTGCGGCAGGTATCACAATGCTCGTAGTAAATTGTTATTACACACGAGTATTCACATCGGTCATCCAGGTACTAGTACTTGGTGTCCAAAATGTCGGAAGAACATTACCGATGAAGCTGCACATTCGACTACGTGTAATACGAAGACGGAAGAAGGAGAACAAATGAAAAACAATGAAAAAGCAGAGGGAAGTCTAATAGTTGATGACACGATAATTGAAGAAGTGGAAGAAGGGGATTTTGAATCTGAAGCAGAAGAAGAAGCAGATACGGAAGAATCAGAAAGTGGTAGTAGTACCGAAGCCGAAGAGGAACATGAATCGGAGGACGAATCCAGAGCAACCGGAGAAATTACTTACAATTCAGAGAGCGAAGATTCAGAAGAACTAGATAATTTGGAAATTGATGAAAAGAACATGGAGCGTTATGCTTTAAAACATCTTCCAGAATCCAAAAGTACAGAAACAGAGAAACACGATGCAAATTTATCGGACGACGATGGACCTCCAGTTCTCAGTCCCATGATGCCTCTGCTTCCTGAGAATATGTCCGTAGAACAGCCGATAGGTCATAAACTAGGCCCTGTAGTGCCTCTAACCGAGAAAGACATGCGCGATTTATCAGAGATTCGAAATCAGTCCTCCCCGAAATCTATGAATCTATATGAGAAACGCTTACATGACAATGAGCCTTTAGAATTGGAGTCTGAAACATTCGCAAATCGAAGCGATGAAGATTTTGAGGATACGAAGAACGAATCTGATGAAAACTCTATCGAAGAAAATGAGGAAGAGAACGAGGATAATGAGGAGATCGAGGAAAACGATGAAATCGAATTAAACGAAGATATAGAAGAACCTGGAGATGACGAGGAAATTGAGAAAAATGGGGACTGTGAACAGGTCGAAGATAACGAAGATAACGAAGATAACGAAGAGAATGAAGAAGACGAAGAGAATGAAGAAAACGAAGAGAATGAAGAAAACGAAGAAAACGAAGAAAACGGGGATATCGAAGAAATGGAAGAGAATGAAAGAAACGAAGGAATTGACGAGTCAGAAGAGCACGAAGGAAATGAAGAAATGGAAGAGACAGACGAAGAGGAAGAAGAGAACGAGGAAAACGAGGAGAGAGAGGAAAACATGCAGTTGGACGATCTGGAAGGTGCTGTTCTAATGGTGACCGATGGGAATCAAATATTGATTCAGCAAGGGATATTGGAAGATGAGAATGAGAATTCAAATCAAGAATATGTTTATTCCGCGCTCAGGTACAGTACAGAAGAGGACAGCGACGATGCAAGGAAATGA
Protein Sequence: MESRERYQELCRLCASYDAVKMDIFGQEGKNRQLVDKIQACLPFKIAENDRLPKCLCYRCMYNLENFYDFRTACVNAVALLERCLSPSESNGDVTTILTCCNDSEFFKGRKSIPVLIPEAPIVNPNAALGTPPRLNSDGEADHETEEIDNSGTDEATVMDDSEDRHSEEYEMDMETNPSDFLEMTSIVAEEPEESELKHQGVSSNLSEHTSQQHEVYVCSLCSKAFSSKGHLSLHARIHVGAGDVIGEKVLTDDHTSYKRPYQCDLCHKSYSTAKHRWGHVSTTHRGHPAVTCGYCSRIYSTRTNLEEHIKSRHAGLPAPTEVPLNNAYRPESRYQCNACGKIFTDAMELNLHGRICTEGQRLDLPGKNEIRDNKVVDSSEASSIGSDDDGKDYRSAEAKLAKNPQLTILKQALTKGDSLKRDFEDKFTTNCKPKKLPKTEHTDFQHTKKWYCESCPQCFTSVNDLKEHETTHDADKPFICILCKKDFFLKSSLSRHIQTLHGVDPCPMVESDKCLKKIVSHNWNESMDLDSYEGKTSSEFPLSPDTNAENEEDHESGQENLIEIETVFVCEICTRDFNDRASLWLHIRATHKEFAAFACGVCLKICADNTQLLNHVNMYHGGSKLLLSEQRRYSCTICGRQHDSRKKLIAHVSIHNVDPNYDPATFVQLNSNYYGENVNGNETAEQMLDYEEDGVDKVDCYICYKSFPNEDHLIRHQRNAHRSEQLVPAGDPLNPSSLNGGGNRAQYHLFFVCELCGSSHPSKWERWLHVSSSHSNESAIKCDREDCGKIFATKSLRNEHIQHHAIQGSSPNTCEICGKLWGSRVDYWKHVMGVHSDTVPLICGVCLKVFPNVLQLSTHVRSKHWPLTNGDFSCDICGRPYSNKSKMSRHRKIHGFEESCENGAENSENKVDGRMRETELGCELCADLKFTSLEKLCNHRRIVHGLFPCDLCNKCYGRTSHLWKHVNRVHKGHEDVTCPYCMKTSASKDHLAAHISKIHRYEPDSRKDGKDNRQFKTEEVSLHYCEKCNKGFHKRYLLRRHMKGCQNYRKDPGALLTRCRACERIFKDRASLQKHIENHHSTYTCHLCNETITSKLGIMTHNRVKHMDHPDLTCNFGSCRKLFRTKEDLEAHRKDHRYHTTPNVCDFCGDTVENKLKLKMHVLSLHRNEIGVSCGVCLIPMKDPKELKSHVEEVHSSVLSRPNTCQVCGKQYASKWKAFDHTKKCHGKVFRTCKQCLAVFTEDSAIRDHYETIHNIPKDQLAAFEHRLDIGSKDFEIESPDIIVKEEPEDLEYEVDMCDEDSSDSKRRRSLTDTYDCEMCPEMFVNSDALSKHYRNVHNTDPERMFKRLKQDEQRKMRGKLNFFCKNCRRQFCTKTLYWNHIATCRRNIRKGEEHLSLRNDMLSSQEEFLKNNNQIKKEEPTSNLNIPDFNLFEDINLQLSGQRPLPNLMPITQRAKSSIKCSRKDSRKVYDESTNTECACEVCGKQWPAKKHLWQHLIRFHRAEAAVTCGVCLKLCKDYDDLAEHLKAAHEAILSTEGNNFTCKICGRYHNARSKLLLHTSIHIGHPGTSTWCPKCRKNITDEAAHSTTCNTKTEEGEQMKNNEKAEGSLIVDDTIIEEVEEGDFESEAEEEADTEESESGSSTEAEEEHESEDESRATGEITYNSESEDSEELDNLEIDEKNMERYALKHLPESKSTETEKHDANLSDDDGPPVLSPMMPLLPENMSVEQPIGHKLGPVVPLTEKDMRDLSEIRNQSSPKSMNLYEKRLHDNEPLELESETFANRSDEDFEDTKNESDENSIEENEEENEDNEEIEENDEIELNEDIEEPGDDEEIEKNGDCEQVEDNEDNEDNEENEEDEENEENEENEENEENEENGDIEEMEENERNEGIDESEEHEGNEEMEETDEEEEENEENEEREENMQLDDLEGAVLMVTDGNQILIQQGILEDENENSNQEYVYSALRYSTEEDSDDARK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00218574;
90% Identity: iTF_00233377;
80% Identity: -