Basic Information

Insect: Agapostemon virescens
Gene Symbol: -
Assembly: GCA_028453745.1
Location: CM052097.1:18183319-18191669[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 28 6.1e-06 0.00085 20.4 1.0 1 23 218 240 218 240 0.98

2 28 0.0079 1.1 10.6 3.6 1 23 263 286 263 286 0.96

3 28 0.00013 0.018 16.2 0.5 2 23 293 315 292 315 0.96

4 28 0.0029 0.4 12.0 0.6 2 21 337 356 336 357 0.92

5 28 0.029 4 8.8 0.1 2 23 453 474 452 474 0.94

6 28 0.0029 0.4 11.9 0.6 1 23 480 503 480 503 0.92

7 28 0.00012 0.016 16.3 0.1 1 23 569 592 569 592 0.96

8 28 0.049 6.8 8.1 0.3 1 23 598 621 598 621 0.96

9 28 0.061 8.4 7.8 0.8 1 23 634 656 634 656 0.97

10 28 3.5e-05 0.0049 18.0 0.9 3 23 700 721 699 721 0.96

11 28 0.0013 0.18 13.0 1.0 2 23 781 804 780 804 0.95

12 28 3.1 4.2e+02 2.4 0.0 2 23 813 835 813 835 0.84

13 28 0.067 9.3 7.7 0.1 2 23 842 864 841 864 0.95

14 28 1.3e-05 0.0018 19.4 1.2 1 23 872 894 872 894 0.98

15 28 5.4 7.6e+02 1.6 3.1 2 23 921 944 920 944 0.91

16 28 0.00021 0.029 15.6 3.3 1 23 947 970 947 970 0.97

17 28 0.00061 0.085 14.1 0.6 2 23 977 999 976 999 0.96

18 28 0.00089 0.12 13.5 3.9 1 21 1023 1043 1023 1044 0.95

19 28 0.0026 0.37 12.1 1.8 2 23 1058 1079 1057 1080 0.93

20 28 0.43 60 5.1 1.4 1 23 1083 1106 1083 1106 0.94

21 28 0.037 5.2 8.5 1.0 2 23 1113 1136 1112 1136 0.89

22 28 3 4.2e+02 2.5 0.2 2 23 1144 1166 1144 1166 0.94

23 28 0.22 31 6.0 2.7 2 23 1204 1226 1204 1226 0.96

24 28 0.00016 0.023 15.9 0.2 1 23 1317 1340 1317 1340 0.96

25 28 0.0061 0.86 10.9 3.3 1 22 1365 1386 1365 1386 0.94

26 28 0.48 67 4.9 1.3 2 23 1483 1505 1482 1505 0.94

27 28 0.31 44 5.5 0.3 2 23 1512 1534 1511 1534 0.94

28 28 4.7 6.5e+02 1.9 2.6 1 23 1545 1567 1545 1567 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	28	6.1e-06	0.00085	20.4	1.0	1	23	218	240	218	240	0.98
2	28	0.0079	1.1	10.6	3.6	1	23	263	286	263	286	0.96
3	28	0.00013	0.018	16.2	0.5	2	23	293	315	292	315	0.96
4	28	0.0029	0.4	12.0	0.6	2	21	337	356	336	357	0.92
5	28	0.029	4	8.8	0.1	2	23	453	474	452	474	0.94
6	28	0.0029	0.4	11.9	0.6	1	23	480	503	480	503	0.92
7	28	0.00012	0.016	16.3	0.1	1	23	569	592	569	592	0.96
8	28	0.049	6.8	8.1	0.3	1	23	598	621	598	621	0.96
9	28	0.061	8.4	7.8	0.8	1	23	634	656	634	656	0.97
10	28	3.5e-05	0.0049	18.0	0.9	3	23	700	721	699	721	0.96
11	28	0.0013	0.18	13.0	1.0	2	23	781	804	780	804	0.95
12	28	3.1	4.2e+02	2.4	0.0	2	23	813	835	813	835	0.84
13	28	0.067	9.3	7.7	0.1	2	23	842	864	841	864	0.95
14	28	1.3e-05	0.0018	19.4	1.2	1	23	872	894	872	894	0.98
15	28	5.4	7.6e+02	1.6	3.1	2	23	921	944	920	944	0.91
16	28	0.00021	0.029	15.6	3.3	1	23	947	970	947	970	0.97
17	28	0.00061	0.085	14.1	0.6	2	23	977	999	976	999	0.96
18	28	0.00089	0.12	13.5	3.9	1	21	1023	1043	1023	1044	0.95
19	28	0.0026	0.37	12.1	1.8	2	23	1058	1079	1057	1080	0.93
20	28	0.43	60	5.1	1.4	1	23	1083	1106	1083	1106	0.94
21	28	0.037	5.2	8.5	1.0	2	23	1113	1136	1112	1136	0.89
22	28	3	4.2e+02	2.5	0.2	2	23	1144	1166	1144	1166	0.94
23	28	0.22	31	6.0	2.7	2	23	1204	1226	1204	1226	0.96
24	28	0.00016	0.023	15.9	0.2	1	23	1317	1340	1317	1340	0.96
25	28	0.0061	0.86	10.9	3.3	1	22	1365	1386	1365	1386	0.94
26	28	0.48	67	4.9	1.3	2	23	1483	1505	1482	1505	0.94
27	28	0.31	44	5.5	0.3	2	23	1512	1534	1511	1534	0.94
28	28	4.7	6.5e+02	1.9	2.6	1	23	1545	1567	1545	1567	0.92

Sequence Information

Coding Sequence: ATGGAGCCCAGGGAACGCTATCAGGAGCTCTGCAGACTTTGCGCATCCTATGACGCCGTCAAGATGGACATCTTCGGTCAAGAGGGCAAGAATAGACAGCTTGTTGACAAGATACAAGCTTGTCTACCGTTTAAGATTGCAGAAGATGATCGACTACCAAAATGCCTGTGTTACCGATGCATGTACAATTTGGAAAATTTCTATGATTTTAGAACAGCATGCGTCAATGCAGTGGCCCTCTTGGAAAGATGTTTACCACCATCAGAAAAATTTGAAGGTGTCACAACCACCTTAAGATGCTGTGATGACTCAGAGCTCATGAAGCAAAAAGACAACATACCGATGTTAATTCCAGAGGCCCCCATTGTGAATCCTAATGCTGCCTTAGGTACACCACCTAGATTAAATTCTGATGAAGAAGCAGATCACGAATCCGAAGAAGTTGTTGATAATAGTGGCACGGATGAAGCAACAATAGTGGACGACTCTGAGGATCATCGTTCAGAAGAGTATGAAATGGATATGGAAACGAATCCAAGCGACTTTTTGGAGATGACTTCAATAGTTACTGAAGAACCTGAAGACTCAGAGTTGAAACATCAAGAACATTCTAATAATATCCCAGAGCATACATCTCAACAACACGAAGTTTATGTTTGTTCTTTGTGTAACAAAGCATTCAGTTCAAAGGGTCATTTATCTTTACACGCGCGTATTCATGTCGGGGCTGGTGATGTAATTGGCGAAAAAGTTCTTACGGACGATCACACTTCCTACAAGAGACCCTATCAATGTGATCTTTGCCATAAGTCTTATTCAACTGCAAAACATCGTTGGGGTCATGTCTCAACATCCCACAGAGGTCATCCAGCAGTAACGTGTGGTTATTGTTCTCGGATCTACTCGACTCGGACAAATTTGGAAGAACATATAAAATCACGTCACGCTGGTCTTCCAGCGCCTTTGGAGGTTCCTGTGAATAATACCTACCGACCAGAAAACAGATGCCAGTGTAATGTTTGCGGAAAGATTTGCACAGATGCCATGGAATTAAATCTCCACGGCAGAGTCTGCATTGAAGAGCAAAGATCCGACTTTTTGAACAAGAGTGAGAACAAAGATACTAAAATTGTAGACAGTTGCGAAGGTTCCAGCATTGGTAGTGATGAAGATAGTAAAGATTATAGAACTGCAGAAGCAAAACTAGCTAAGAATCCTCAATTAACAATCTTGAAGCAAGCACTAATGAAAGGTGATAGCCTTAAACGAGACTTTGAAGACAAACTTACGACAAATTGTAAACCAAAAAAACTGCCAAAAACAGAAAACACAGATGTTAAAAGTGATAAGAAATGGTACTGTGAATCGTGTCCTCAATTTTTCACTTCAGTCGAAAGCTTGAAAGAACATGAAGCAATTCATGACGCTGATAAGCCATACATCTGTATTCTATGCAAAAAAGATTTTGTTCTTAAGTCTTCCTTGAGCAGACATATTCAAACGTTACATGGTGTTGATCCGTATCCTATTGTAGAAAGCGATAAATGTTTAAAAAAGATTCTTTCACGACATTGGAATGAATCGATGGATCTTGACTATGAACGGAAAATTGCAGAATTCCCATTATCCCCAGAGACTAATGCTGAAAACGAGGAGGATGATCATGAGAGTGGGCAGGAAAATCTTATTGAAATCGAAACTGTATTTGTTTGTGAAATCTGTACTCGTGATTTTAATGATCGTGCTTCACTTTGGCTTCACATTCGAGCCACGCACAAGGAATTTGCAGCATTTGCGTGTGGTGTTTGTTTAAAAATATGTGCAGACAATATGCAACTTTTGAATCATGTAAATATGTACCACGGTGGATCAAAATTGTTACTTTCTGAACAAAGAAGGTACAGCTGTACCATTTGTGGCAGACAACACGACTCTAGAAAGAAATTAATCGCACATGTATCCATACATAACATAGATCAGAATTATGATCCAGCAACTTTCGTACAATTGAATAGTAATTATTACGGGGAAAATATGAATGGTAACGAAACTGCGGAAACGATGCTTGATTACGAAGAAGAAGGGGATAAAGTAGATTGTTACATTTGTTATAAGTCATTTCCAAATGAAGATCATTTGATACGGCATCAAAGAAATGCACACAGATCTGAGCAACCAATGCTGGCAGGAGACTCCTTAAATCAATCGAATTTAAATGGCGGTGGAAATAGAGCTCAATACCACTTGTTCTTTGTTTGTGAACTTTGTGGCAGTTCACATCCCAGTAAATGGGAACGTTGGTTACATGTCAGCTCATCTCATGCCAATGAGCCAGCCATAAAATGTGATCGCGATGACTGTGGTAAAATTTTTGCAACAAAGTCTCTTCGAAACGATCACATTCAACATCATGCTATTCAAGGTCCCTCTCCAAACACGTGTGAAATTTGTGGTAAACTTTGGGGCAGCAGAGTGGATTATTGGAAGCACGTTATGGGCGTTCATTCGGATACTGTTCCATTAATTTGTGGTGTTTGTTTGAAGGTTTTCCCGAATGTGTTACAATTAAGTAACCATGTCAAATCGAAACATTGGCCATTAACAAATGGTGATTTTAGTTGTGATATATGCGGAAGACCGTATTCGAATAAGTCGAAAATGTCTAGGCATAGGAAAATCCATGGCTTTGAAGAAACTTGCGACAATGGAGTTGAAAGTAATGATAACAAACCTGATGGACGAATCAGAGATACTGAATTAAGTTGTGAACATTGTACAGACTCAAAGTTTGCTAGTTTAGAGAAGTTGTGTAATCACAGACGAATCGTCCATGGCCTTTTCCCTTGCGATCTCTGTAATAAATGTTATGGTAGAACCTCACACCTATGGAAACATGTTAATAGAGTCCATAAAGGTCATGAGGATGTTACATGCCCTTATTGCTTAAAAACTAGTGCATCGAAAGATCATTTGGCTACGCATATTTCGAAAATTCACAGGTACGAACCTGATTCTAGAAAAGATGGAAAAGATACTAGACAATTTAAAACAGACGAAGTTAGTTTACATTACTGTGAGAAATGTAATAAAGGATTTCATAAGCGATATCTGTTACGTAGACATATGAAAGGATGTCAAAATTATAGAAAAGATCCTGGTGCGTTGCTTACTCGTTGCAGAGCTTGTGAAAGAATTTTTAAAGACCGCGCTAGTTTACAAAAACATATAGAAAATCATCATAGTACGTATACTTGTCATCTTTGTAATGAAACGATCACTTCAAAATTAGGAATTATGACGCATAATAGAGTGAAACATATGGATCATCCGGATTTGACGTGTAATTTTGGAGCTTGTAAAAAATTGTTCAGAACGAAGGAAGATTTAGAATCACATAAAAAAGATCACAGATATCACACAAATCCTAACGTATGTGACTTCTGTGGTGACACTGTCGAAAATAAATTAAAATTGAAGATGCATGTACTGTCTCTTCATCGTAACGAAATTGGAGTATCTTGTGGAGTATGTTTAATTCCAATGAAAGATCCTAAAGAGCTTAAGGGACATGTAGAAGAAGTTCACTCTAGTGTTCTTTCAAAACCTAATACCTGTCAAGTATGTGGTAAACAATATGCTTCAAAATGGAAAGCTTTCGACCATACTAAGAAATGTCATGGTAAAGTATTCCGGACTTGTAAACAATGTTTAGCTGTTTTTACAGAAGATTGTGCTATCAGAGATCATTATGAAATGGTACATAATGTTCCGAAAGATCAACTTGCAGCATTTGAATACAGACTGGATATTGGATCGAAACATGACGATTATGAAATTGAGTCTCCCGACATTATTGTCAAAGAAGAACCAGACGATTTGGAGTATGACGTAGATATGTGTGATGAGGACTCTAGTGATTCAAAACGAAGAAGATCATTAACTGATACATTTGACTGTGAAATGTGTCCTGAGATGTTTGTGAATAGCAGTGCTCTTTCAATGCACTATCGTAATATGCATAATACAAATCCAGAAAGAATGTTTAAGAGACTGAAGCAGGAAGAACAAAGAAAAATGCGTGGGAAACTAAGTTTCGCTTGTAAGAATTGTAAGAAACAATTTTGTACAAAGACATTGTATTGGAATCATATTTCAACTTGCAGAAGAAACGCTTTGCGAAAAGAAAATGATATGTTAGATAATCAAGAAGGTGTGCTTGATAATCGAGATGAAATTTTGAAAAATAATAATCAAATTAAAAAAGATGAAAGTACATCAAACTTAAATATCCCAGATTTCAATCTGTTTGAAGACATAAATCTCCAATTATCAGGTCAAAGACCTCTTCCAAATCTGATGCCGCTTTCTCAGAGGGTGAAATCGTCAATGAAATGTTCAAGAAAAGATTCAAGGAAAGTGTATGATGAATCAACGAATACAGAATGTGCTTGTGAAGTCTGTGGAAAACAGTGGCCAGCAAAGAAACACTTATGGCAACATTTGATTCGCTTCCATCGAGCAGAAGCTGCAGTCACCTGTGGGGTGTGTTTGAAACTCTGCAAGGATTATGATGATTTAGCAGAACATTTGAAAGCTACACACGCTGCAATCCTTTCTTGTGAAGGAAACAATTTCACGTGTAAAACTTGTGGCAGATATCACAATGCACGCAGTAAGCTATTGTTACACACGAGTATTCATATCGGACACGCAAGTAATGGAACTACATGTCCGAAATGCTATAAGAATGTCACTGACGAAACTGATCATTCTAATATATGTACTGGAAAAACAGAAGAGGAGCATTTGAAGAACGAGAAGAAGCCAGAAGGAAGCCTGATAACAGATGATGCAATGATAGAAGAAGTGGAAGAAGGGGATTTCGAATCTGAGGCAGAAGAGGCAGATTCAGCAGAATCAGATAGTGGTAGTAGCACGGATGTAGAAGAAGACAATGATTCTGAAGGAGAATCTAGGGCTACAGGAGAAATTACATACAATTCAGATAGTGATGATGATTCTGAAGAACTGGGTAATCTAGAAATTGATAAGAATATCCAGCACTATACTTTGGAAGGCCTTCAGGAATCCAAAGATACTGAAGCGGAAAAGAATGATGTTGATATGTCAGATGATGATGGCCCTCCAGTACTCAGCCCTATGATGCCTCTACTAACTGGGAATATATCTGGAGAACAGTCGATGAGCCACAAGCTTGCTTCACTAGCAACGCTAAGAAACACAGAAATGGGAATTTGCCATAATGTAGCAGAAATTCAAACTCAATCTTCTACTAAATCAGTGAATTTCTACGGCAAAAGTTTGTCTAATAATGAATCTTTGAACTTTGAATCTGAAGCATTTATAAATCGAAGCGACGAGGAATATGAAAGTGCGAAAAATGAATATGATGAAAATTCTTTGGAAGAGAATGAAGACAGTGGAGAGAATGAAGGTAATGAAATAATAGCAGACAACGAACATGAAGAAAACGAAGAACTCGAGCAGAACGAAGATAACGATGATAACGAGGAGAATAATGAAATGGAGGTAAATGAAGACAGTGAAGGAATTGAATTGTATGAAGAAACTGAAGATAATGAAGAAATGGAAGATAATGAAGATAATGAAGATAATGAGGAACAAGAACAGAATTATGAGAATGACGAGAATGAAGACATTGAAGGGAGCGAGGAAAACGAAGAAAACGAAGAAAACGAGGAAAACGAAGAACACGAGGAAAACGAAGAAAACGAAGAAAAAGTAGAAGGCATGCAATTGGATGATTTAGAGAATGCTGTACTAATGGTAACTGAAGTAAATGAAATATTAATACCACAAGATATATTGGAGGATGGAATTGAAAACGTAAATGAAGCATACGTTTATTCTACGCTTGCTTACAGTACTGATGAAGACAGTGATGATGCAGGAAAACGAGTGCCAAATTGTGAATAA
Protein Sequence: MEPRERYQELCRLCASYDAVKMDIFGQEGKNRQLVDKIQACLPFKIAEDDRLPKCLCYRCMYNLENFYDFRTACVNAVALLERCLPPSEKFEGVTTTLRCCDDSELMKQKDNIPMLIPEAPIVNPNAALGTPPRLNSDEEADHESEEVVDNSGTDEATIVDDSEDHRSEEYEMDMETNPSDFLEMTSIVTEEPEDSELKHQEHSNNIPEHTSQQHEVYVCSLCNKAFSSKGHLSLHARIHVGAGDVIGEKVLTDDHTSYKRPYQCDLCHKSYSTAKHRWGHVSTSHRGHPAVTCGYCSRIYSTRTNLEEHIKSRHAGLPAPLEVPVNNTYRPENRCQCNVCGKICTDAMELNLHGRVCIEEQRSDFLNKSENKDTKIVDSCEGSSIGSDEDSKDYRTAEAKLAKNPQLTILKQALMKGDSLKRDFEDKLTTNCKPKKLPKTENTDVKSDKKWYCESCPQFFTSVESLKEHEAIHDADKPYICILCKKDFVLKSSLSRHIQTLHGVDPYPIVESDKCLKKILSRHWNESMDLDYERKIAEFPLSPETNAENEEDDHESGQENLIEIETVFVCEICTRDFNDRASLWLHIRATHKEFAAFACGVCLKICADNMQLLNHVNMYHGGSKLLLSEQRRYSCTICGRQHDSRKKLIAHVSIHNIDQNYDPATFVQLNSNYYGENMNGNETAETMLDYEEEGDKVDCYICYKSFPNEDHLIRHQRNAHRSEQPMLAGDSLNQSNLNGGGNRAQYHLFFVCELCGSSHPSKWERWLHVSSSHANEPAIKCDRDDCGKIFATKSLRNDHIQHHAIQGPSPNTCEICGKLWGSRVDYWKHVMGVHSDTVPLICGVCLKVFPNVLQLSNHVKSKHWPLTNGDFSCDICGRPYSNKSKMSRHRKIHGFEETCDNGVESNDNKPDGRIRDTELSCEHCTDSKFASLEKLCNHRRIVHGLFPCDLCNKCYGRTSHLWKHVNRVHKGHEDVTCPYCLKTSASKDHLATHISKIHRYEPDSRKDGKDTRQFKTDEVSLHYCEKCNKGFHKRYLLRRHMKGCQNYRKDPGALLTRCRACERIFKDRASLQKHIENHHSTYTCHLCNETITSKLGIMTHNRVKHMDHPDLTCNFGACKKLFRTKEDLESHKKDHRYHTNPNVCDFCGDTVENKLKLKMHVLSLHRNEIGVSCGVCLIPMKDPKELKGHVEEVHSSVLSKPNTCQVCGKQYASKWKAFDHTKKCHGKVFRTCKQCLAVFTEDCAIRDHYEMVHNVPKDQLAAFEYRLDIGSKHDDYEIESPDIIVKEEPDDLEYDVDMCDEDSSDSKRRRSLTDTFDCEMCPEMFVNSSALSMHYRNMHNTNPERMFKRLKQEEQRKMRGKLSFACKNCKKQFCTKTLYWNHISTCRRNALRKENDMLDNQEGVLDNRDEILKNNNQIKKDESTSNLNIPDFNLFEDINLQLSGQRPLPNLMPLSQRVKSSMKCSRKDSRKVYDESTNTECACEVCGKQWPAKKHLWQHLIRFHRAEAAVTCGVCLKLCKDYDDLAEHLKATHAAILSCEGNNFTCKTCGRYHNARSKLLLHTSIHIGHASNGTTCPKCYKNVTDETDHSNICTGKTEEEHLKNEKKPEGSLITDDAMIEEVEEGDFESEAEEADSAESDSGSSTDVEEDNDSEGESRATGEITYNSDSDDDSEELGNLEIDKNIQHYTLEGLQESKDTEAEKNDVDMSDDDGPPVLSPMMPLLTGNISGEQSMSHKLASLATLRNTEMGICHNVAEIQTQSSTKSVNFYGKSLSNNESLNFESEAFINRSDEEYESAKNEYDENSLEENEDSGENEGNEIIADNEHEENEELEQNEDNDDNEENNEMEVNEDSEGIELYEETEDNEEMEDNEDNEDNEEQEQNYENDENEDIEGSEENEENEENEENEEHEENEENEEKVEGMQLDDLENAVLMVTEVNEILIPQDILEDGIENVNEAYVYSTLAYSTDEDSDDAGKRVPNCE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00218574;
90% Identity: iTF_00966151;
80% Identity: -