Fvar008201.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Frieseomelitta varia
Gene Symbol
-
Assembly
GCA_011392965.1
Location
WNWW01000433.1:264320-276812[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 30 1.2e-05 0.00074 19.1 0.9 1 23 219 241 219 241 0.98
2 30 0.0065 0.4 10.4 3.7 1 23 264 287 264 287 0.96
3 30 9.7e-05 0.006 16.2 0.5 2 23 294 316 293 316 0.96
4 30 0.021 1.3 8.9 0.0 1 21 337 357 337 358 0.94
5 30 0.0085 0.53 10.1 0.2 2 23 454 475 453 475 0.96
6 30 0.011 0.65 9.8 1.2 2 23 482 504 481 504 0.91
7 30 8.5e-05 0.0053 16.4 0.1 1 23 571 594 571 594 0.96
8 30 0.017 1.1 9.1 0.4 1 23 600 623 600 623 0.96
9 30 0.045 2.8 7.8 0.8 1 23 636 658 636 658 0.97
10 30 2.6e-05 0.0016 18.0 0.9 3 23 702 723 701 723 0.96
11 30 0.00092 0.057 13.1 0.9 2 23 783 806 782 806 0.95
12 30 2.3 1.4e+02 2.5 0.0 2 23 815 837 815 837 0.84
13 30 0.009 0.56 10.0 0.2 2 23 844 866 843 866 0.95
14 30 9.4e-06 0.00058 19.4 1.2 1 23 874 896 874 896 0.98
15 30 0.73 45 4.0 0.8 3 23 924 946 922 946 0.83
16 30 0.00015 0.0094 15.6 3.3 1 23 949 972 949 972 0.97
17 30 0.00045 0.028 14.1 0.6 2 23 979 1001 978 1001 0.96
18 30 0.00066 0.041 13.6 3.9 1 21 1025 1045 1025 1046 0.95
19 30 0.0019 0.12 12.1 1.8 2 23 1060 1081 1059 1082 0.93
20 30 0.32 20 5.1 1.4 1 23 1085 1108 1085 1108 0.94
21 30 0.019 1.2 9.0 1.3 2 23 1115 1138 1114 1138 0.92
22 30 2.2 1.4e+02 2.5 0.2 2 23 1146 1168 1146 1168 0.94
23 30 6.8 4.2e+02 1.0 0.0 2 23 1175 1197 1174 1197 0.88
24 30 0.16 10 6.0 2.7 2 23 1206 1228 1206 1228 0.96
25 30 1.2 77 3.3 0.1 2 23 1234 1256 1234 1256 0.95
26 30 4.1e-05 0.0025 17.4 0.2 1 23 1319 1342 1319 1342 0.96
27 30 0.036 2.2 8.1 3.4 1 21 1367 1387 1367 1388 0.93
28 30 0.21 13 5.7 1.3 2 23 1479 1501 1478 1501 0.94
29 30 0.21 13 5.7 0.2 2 23 1508 1530 1507 1530 0.94
30 30 3.4 2.1e+02 1.9 2.6 1 23 1541 1563 1541 1563 0.92

Sequence Information

Coding Sequence
ATGCCGACGATGGAACCCAAGGAACGCTACCAGGAGCTCTGTCGACTTTGCGCATCCTACGACGCCGTCAAGATGGACATCTTCGGCCAAGAGGGCAAGAGCAGACAGCTCGTTGACAAAATACAAGCCTGTCTGCCGTTTAAGATTACAGAAAATGATCGACTACCAAAATGCCTGTGTTACAGGTGTATGtacaatttggaaaatttctatGACTTTAGAACAGCATGTGTTAATGCAGTTGCTCTCTTGGAAAGATGTTTATCACCTTCAGGAccgaatgGAGATGTTACTACTATCTTGACATGTAGTAATGATTCAGAGTTCTTTAAAGGAAGGAAAAGTATACCAGTCCTAATTCCAGAAGCTCCTATTGTAAATCCAAATGCTGCTTTAGGCACACCACCCAGATTAAATTCTGATGGAGAGGCTGACCATGAGATAGAAGAAATTGATAATAGTGGCACAGATGAAgTCATGGATGATTCTGAAGATCATCATTCAGAGGAGTATGAAATGGATATGGAAACAAATCCTAGTGATTTTTTGGAAATGACTTCAATAGTTACAGAAGAACCTGAAGAATCAGAATTGAAACATCAGGATATTTCTAGTAACTTACCAGAgcaCACATCCCAACAACAACATGAAGTTTATGTTTGTTCCTTGTGCAGCAAAGCATTTAGTTCAAAGGGTCATTTGTCTTTACATGCACGCATTCACGTTGGTGCTGGTGACGTGATTGGCGAAAAAGTTCTTACAGATGATCATACATCATATAAAAGGCCCTATCAATGTGATCTTTGTCATAAATCTTATTCTACTGCAAAACATCGTTGGGGTCATGTTTCTACAACTCATAGAGGTCATCCAGCAGTGACATGCGGTTATTGTTCTCGGATTTACTCAACTCGAACAAATTTGGAAGAACATATAAAATCACGTCACGCTGGTCTTCCAGCACCTACAGAGATTCCATTGAATAATGCCTATCAGccagaaaataaatatcagtgCAGTGCTTGTGGGAAGATTTGCATAGATGCCATGGAACTGAATCTTCATGGTAGAATTTGTACTGAAGGACGAAGATTAGATCTTCCAGAGAAAAACGAGATTAgggattataaaattgtagatagTTCCGAAGCTTCAAGTATTGGAAGTGATGATGATGGCAAAGATTATAGAAGTGCGGAAGCTAAATTGGCAAAAAATCCTcagttaacaattttaaaacaagCATTAACAAAGGGAGATAGTCTAAAGCGAGATTTTGAAGATAAATTTACTTCAAATTGCAAACcaaaaaaattgccaaaaaCAGaGCATTGTGATTTTCAAAATACTAAGAAATGGTATTGCGAATCTTGCCCTCAGTGTTTTATTTCAGTTGAGGATTTAAGAGAGCATGAAGCAACTCATTTTACGGATAAaccatttatttgtattttgtgtAAAAAAGACTTTTTCCTTAAATCTTCCTTAAGCAGGCATATTCAAACCTTACATGGAGTTGATCCATGTCCTATAATAGAAAGTGATAAGTGTTTAAAGAAAGTTGTTTCACATAATTGGAATGAATCTATGGATATTGATTCGTATGAGGCTAAAATTTCTTCTGAATTTCCACTATCTCCAgagataaatgtagaaaatgaagaagaccATGAGAGTGGGCAAGAAAATCTtatcgaaattgaaactgtATTTGTTTGTGAAATTTGTACTCGTGATTTTAATGATCGTGCATCTCTCTGGCTTCATATTCGTGCTACGCATAAAGAATTTGCAGCATTTGCATGTggtgtttgtttgaaaatttgtgcAGACAATACCCAACTTTTGAACCATGTAAACATGTATCACGGTGgttcaaaattattactttctgAACAAAGAAGGTACAGTTGTACTATTTGTGGTAGACAACAtgattcgagaaaaaaattaattgcccATGTATCCATACATAATGTAGATCCAAATTATGATCCTGCTACCTTTGTCCAAttgaatagtaattattaCGGAGAGAATGTTAATGGTAATGAAACAGCAGAACAAATGCTCGACTATGAAGAAGATGGAGATAAAGTGGattgttatatttgttataaatcaTTTCCTAATGAAGATCATTTGATACGACATCAAAGAAATGCACATAgatCGGAACAACTAATGCCAACAGGAGATCCTTTAAATCCGTCAAATTTAAATGGTGGCGGAAATAGAGCTCaatatcatcttttttttgtttgtgaACTTTGTGGAAGTTCACATCATAGTAAATGGGAACGTTGGCTACATGTTAGCTCATCTCATAGCAATGAGTCAGCCATAAAATGCGATCGTGAAGACTGTGGTAAAATTTTTGCTACAAAATCTCTTAGAAATGAACATATTCAACATCATGCAATTCAAGGTTCATCCCCAAATACTTGTGAAATCTGCGGTAAACTTTGGGGCAGTAGAGTTGATTATTGGAAGCATGTTATGGGCGTACATTCGGATACCGTTCCATTAATTTGTGGCGTCTGTTTAAAAGTGTTCTCAAATGTTTTGCAATTAAGTACTCATGTGAGATCAAAACATTGGCCGTTAACGAATGGTGATTTTAGTTGTGATATTTGTGGTAGACCATATTCGAATAAATCCAAAATGTCTAGACACAGAAAAATCCATGGTTTTGAAGAAAGCTGTGACAACGGagcagaaaatttcgagaataaaatcGATGGACGAATGAGAGAAACAGAACTAAGTTGTGAGCTTTGTGcagatttgaaatttactagcttagaaaaattatgtaatcaTAGACGAATCGTTCATGGACTTTTTCCTTGTGATCTCTGTAATAAATGCTATGGCAGAACTTCGCATTTATGGAAACATGTGAACAGGGTTCACAAAGGCCATGAAGATGTAACTTGTCCTTATTGTTTGAAAACCAGTGCTTCAAAAGATCATTTAGCAACtcacatttcaaaaattcatagaTATGAACCAGATTCTAGAAAAGATGGAAAAGATAGTAGACAATTTAAAACCGAAGAAGTTAGTTTACATTAttgtgaaaaatgtaataaaggATTTCATAAGCGGTATCTTTTACGTAGACATATGAAAGGATGTCAGAATTACAGAAAAGATCCTGGGGCATTATTAACAAGATGCAGAGCTTGCGAAAGGATATTTAAAGATCGTGCCAGTTTACAAAAGCATATTGAGAATCATCATAGTACATACACATGTCATCTTTGTAATGAGACGATTACTTCAAAATTAGGAATTATGACACACAACAGAGTGAAACATATGGATCATCCTGATTTAACTTGCAATTTTGGGTCTTGTaggaaattattcagaacTAAAGAAGATTTGGAATCTCATAGAAAAGATCACAGATATCATACAACTCCAAACGTTTGTGATTTCTGCGGTGATAcggttgaaaataaattgaaattaaagatgCACGTTTTGTCTCTTCATCGCAATGAAATTGGTGTATCTTGTGGAGTATGTTTAATTCCAATGAAAGATCCAAAAGAACTTAAAAGTCACGTAGAAGAAGTTCATTCTAGTGTGCTTTCAAAACCTAATACATGTCAAGTTTGTGGGAAACAATATGCTTCAAAATGGAAAGCTTTTGATCATACTAAAAAGTGTCATGGAAAAGTATTTAGGACTTGTAAACAGTGTTTGGCTGTTTTCACTGAAGATTCTGCAATTAGAGATCATTATGAAACAATACATAATATCCCCAAAGATCAGCTTGCATTATTCGAGCATAGATTGGATATTGGGTCAAAAAATGAGGATTTCGAAATAGAGTCTCCTGATGTAATAGTTAAAGAAGAACCAGAGGATTTAGAGTATGAAGTAGATATATGTGATGAAGATTCTAGtgattcaaaaagaagaagatccTTAACTGATACTTATGATTGTGAAATGTGTCCAGAAATGTTTGTGAACAGTGATGCACTTTCAAAACATTATCGTAATATGCACAATACAGATccagaaagaatatttaagagATTGAAACAAGATGAACAGAGAAGAATGCGtagcaaaatgaattttttttgtaaaaactgTAGGAGACAATTTTGTACTAAAACATTATATTGGAATCATATTGCAACTTGTAgaaaaaatgtacgaaaaggCGAAGAACGAAATGATATGTTAGATAatcaagaatttttgaaaaataataatcaaattaaaaaagaggAGCCCACATCAAATTTGAATATTCCTGATTTCAATCTCTTTGAAGATATAAATCTTCAACTCTCAGGTCAGAGACCTCTTCCGAATCTTATGCCACTTAATCAGAGGACAAAATCTTCAATGAAATGTTCAAGAAAGGATTCTAGAAAAGTTTATGATGAATCAACAAATACAGAATGTGTTTGTGAAGTATGTGGAAAACAGTGGCCtgcaaaaaaacatttatggCAACATCTAATTCGTTTTCATCGAGCGGAAGCAGCAGTAACTTGCGGAGTATGTCTAAAACTTTGCAAAGACTATGATGATTTGGCAGAACATTTGAAAGCTGCACACGAAGCAATCCTTTCTACTGAAGGAAACAATTTTACATGTAAAACTTGTGGCAGATATCACAATGCTCGtagtaaattgttattacataCGAGTATTCATATCGGCCATCCAGGTACTAGTACTTGGTGTCCAAAATGTCGGAAAAATATTACCGACGAAACTGCACATTTAACTACGTGTAATACGAAAACGGAAGAAGgagaacaattgaaaaataatgaaaaagcagaagGAAGTCTAATAGCGGATGACGCGATGATTGAAGAAGTGGAAGAAGGAGATTTTGAATCCGAAGCAGAAGAAGCAGAAACAGAAGAATCGGAAAGTGATAGTAGTACTGAGGTTGAAGAGGAACATGAGTCAGAGGATGAATCTAGAGTAACTGGAGATATTACTTACAACTCAGAGAGTGAAGATTCAGAAGAACtggataatttagaaattgatgaaaaaaatatggaacatTATGCCTTAGAACACCTTCAAGAATCTAAAAATGCAgaaaaacagaaacatgATGCGAATTTGTCAGATGATGATGAACCTCCAGTTCTCAGTCCCATGATGCCTTTGCTTTCTGAGAATATGTCTGAACAATCGATGGGTCATAAACTAAGTTCTATAGTGCCTCTAACTGGGAAAGGAATGGGAATATGTGATTTATCAGAGATTCGAAATGGATCCTCTCCAAAATCCGTGAATCTATATGAAAAACACTTACCTAATAATGAGTCTTTAGAGCTTGAATCTGAAACATTTGCGAATCAAAGCGATGAAGATTTTGAGGACGCGAAGAATGAATTTGATGGAAACTCTACCGAAGAAAATGACGAGGAAAATGAGGATAATGAAGAGATTGAAGCAAATGATGAAATGGAATTAAATGAAGTGATAGAAGAAGTTGACgagaacgaagaaattgaGAGAAATGAGGATAGTGAACAGATTGAAGATAATGACGGTAATGAAGAGAATGGAGATATTGAAGAAATGGAAGAgattgaaagaaatggaagTATTGATGAGtcagacgaagaagaagaaaatgatgaaaatgatgAGAGAGAGGAAAACATGCAATTGGATGATTTAGAAGGTGCTGTTTTAATGGTGGCTGAAGGGGATCAGATATTGATTCAACAAGAAATATTGGAggacgaaaatgaaaatttaaatcaagaaTATGTTTATTCTGCGCTCAGATACAGTTCAGAGGAGGACAGTGATGATGCAAGGAAATGA
Protein Sequence
MPTMEPKERYQELCRLCASYDAVKMDIFGQEGKSRQLVDKIQACLPFKITENDRLPKCLCYRCMYNLENFYDFRTACVNAVALLERCLSPSGPNGDVTTILTCSNDSEFFKGRKSIPVLIPEAPIVNPNAALGTPPRLNSDGEADHEIEEIDNSGTDEVMDDSEDHHSEEYEMDMETNPSDFLEMTSIVTEEPEESELKHQDISSNLPEHTSQQQHEVYVCSLCSKAFSSKGHLSLHARIHVGAGDVIGEKVLTDDHTSYKRPYQCDLCHKSYSTAKHRWGHVSTTHRGHPAVTCGYCSRIYSTRTNLEEHIKSRHAGLPAPTEIPLNNAYQPENKYQCSACGKICIDAMELNLHGRICTEGRRLDLPEKNEIRDYKIVDSSEASSIGSDDDGKDYRSAEAKLAKNPQLTILKQALTKGDSLKRDFEDKFTSNCKPKKLPKTEHCDFQNTKKWYCESCPQCFISVEDLREHEATHFTDKPFICILCKKDFFLKSSLSRHIQTLHGVDPCPIIESDKCLKKVVSHNWNESMDIDSYEAKISSEFPLSPEINVENEEDHESGQENLIEIETVFVCEICTRDFNDRASLWLHIRATHKEFAAFACGVCLKICADNTQLLNHVNMYHGGSKLLLSEQRRYSCTICGRQHDSRKKLIAHVSIHNVDPNYDPATFVQLNSNYYGENVNGNETAEQMLDYEEDGDKVDCYICYKSFPNEDHLIRHQRNAHRSEQLMPTGDPLNPSNLNGGGNRAQYHLFFVCELCGSSHHSKWERWLHVSSSHSNESAIKCDREDCGKIFATKSLRNEHIQHHAIQGSSPNTCEICGKLWGSRVDYWKHVMGVHSDTVPLICGVCLKVFSNVLQLSTHVRSKHWPLTNGDFSCDICGRPYSNKSKMSRHRKIHGFEESCDNGAENFENKIDGRMRETELSCELCADLKFTSLEKLCNHRRIVHGLFPCDLCNKCYGRTSHLWKHVNRVHKGHEDVTCPYCLKTSASKDHLATHISKIHRYEPDSRKDGKDSRQFKTEEVSLHYCEKCNKGFHKRYLLRRHMKGCQNYRKDPGALLTRCRACERIFKDRASLQKHIENHHSTYTCHLCNETITSKLGIMTHNRVKHMDHPDLTCNFGSCRKLFRTKEDLESHRKDHRYHTTPNVCDFCGDTVENKLKLKMHVLSLHRNEIGVSCGVCLIPMKDPKELKSHVEEVHSSVLSKPNTCQVCGKQYASKWKAFDHTKKCHGKVFRTCKQCLAVFTEDSAIRDHYETIHNIPKDQLALFEHRLDIGSKNEDFEIESPDVIVKEEPEDLEYEVDICDEDSSDSKRRRSLTDTYDCEMCPEMFVNSDALSKHYRNMHNTDPERIFKRLKQDEQRRMRSKMNFFCKNCRRQFCTKTLYWNHIATCRKNVRKGEERNDMLDNQEFLKNNNQIKKEEPTSNLNIPDFNLFEDINLQLSGQRPLPNLMPLNQRTKSSMKCSRKDSRKVYDESTNTECVCEVCGKQWPAKKHLWQHLIRFHRAEAAVTCGVCLKLCKDYDDLAEHLKAAHEAILSTEGNNFTCKTCGRYHNARSKLLLHTSIHIGHPGTSTWCPKCRKNITDETAHLTTCNTKTEEGEQLKNNEKAEGSLIADDAMIEEVEEGDFESEAEEAETEESESDSSTEVEEEHESEDESRVTGDITYNSESEDSEELDNLEIDEKNMEHYALEHLQESKNAEKQKHDANLSDDDEPPVLSPMMPLLSENMSEQSMGHKLSSIVPLTGKGMGICDLSEIRNGSSPKSVNLYEKHLPNNESLELESETFANQSDEDFEDAKNEFDGNSTEENDEENEDNEEIEANDEMELNEVIEEVDENEEIERNEDSEQIEDNDGNEENGDIEEMEEIERNGSIDESDEEEENDENDEREENMQLDDLEGAVLMVAEGDQILIQQEILEDENENLNQEYVYSALRYSSEEDSDDARK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00218574;
90% Identity
iTF_00982438;
80% Identity
-