Basic Information

Insect: Xylocopa violacea
Gene Symbol: -
Assembly: GCA_963969225.1
Location: CAXAJV010000012.1:23379788-23389171[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 29 7.5e-06 0.00061 20.3 1.0 1 23 218 240 218 240 0.98

2 29 0.011 0.88 10.3 3.7 1 23 263 286 263 286 0.96

3 29 9.9e-05 0.0081 16.7 0.8 2 23 293 315 292 315 0.96

4 29 0.0034 0.28 11.9 0.5 2 21 337 356 336 357 0.92

5 29 0.0091 0.74 10.6 0.3 2 23 453 474 452 474 0.94

6 29 0.0045 0.36 11.5 0.6 2 23 481 503 480 503 0.91

7 29 0.00014 0.011 16.3 0.1 1 23 570 593 570 593 0.96

8 29 0.025 2 9.2 0.2 1 23 599 622 599 622 0.96

9 29 0.074 6 7.7 0.8 1 23 635 657 635 657 0.97

10 29 4.3e-05 0.0035 17.9 0.9 3 23 701 722 700 722 0.96

11 29 0.0027 0.22 12.2 1.1 2 23 782 805 781 805 0.95

12 29 3.7 3e+02 2.3 0.0 2 23 814 836 814 836 0.84

13 29 0.1 8.4 7.2 0.1 2 23 843 865 842 865 0.95

14 29 1.6e-05 0.0013 19.3 1.2 1 23 873 895 873 895 0.98

15 29 1.2 94 3.9 0.8 3 23 923 945 921 945 0.83

16 29 0.00025 0.02 15.5 3.3 1 23 948 971 948 971 0.97

17 29 0.0005 0.04 14.5 0.3 2 23 978 1000 977 1000 0.96

18 29 0.0011 0.088 13.5 3.9 1 21 1021 1041 1021 1042 0.95

19 29 0.0032 0.26 12.0 1.8 2 23 1056 1077 1055 1078 0.93

20 29 0.53 43 5.0 1.4 1 23 1081 1104 1081 1104 0.94

21 29 0.016 1.3 9.8 0.9 2 23 1111 1134 1110 1134 0.92

22 29 3.6 3e+02 2.4 0.2 2 23 1142 1164 1142 1164 0.94

23 29 0.27 22 5.9 2.7 2 23 1202 1224 1202 1224 0.96

24 29 2.1 1.7e+02 3.2 0.1 2 23 1230 1252 1230 1252 0.95

25 29 6.8e-05 0.0055 17.3 0.2 1 23 1315 1338 1315 1338 0.96

26 29 0.029 2.4 9.0 3.6 1 21 1363 1383 1363 1384 0.93

27 29 0.59 48 4.9 1.3 2 23 1476 1498 1475 1498 0.93

28 29 0.13 11 6.9 0.3 2 23 1505 1527 1504 1527 0.94

29 29 5.7 4.6e+02 1.8 2.6 1 23 1538 1560 1538 1560 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	29	7.5e-06	0.00061	20.3	1.0	1	23	218	240	218	240	0.98
2	29	0.011	0.88	10.3	3.7	1	23	263	286	263	286	0.96
3	29	9.9e-05	0.0081	16.7	0.8	2	23	293	315	292	315	0.96
4	29	0.0034	0.28	11.9	0.5	2	21	337	356	336	357	0.92
5	29	0.0091	0.74	10.6	0.3	2	23	453	474	452	474	0.94
6	29	0.0045	0.36	11.5	0.6	2	23	481	503	480	503	0.91
7	29	0.00014	0.011	16.3	0.1	1	23	570	593	570	593	0.96
8	29	0.025	2	9.2	0.2	1	23	599	622	599	622	0.96
9	29	0.074	6	7.7	0.8	1	23	635	657	635	657	0.97
10	29	4.3e-05	0.0035	17.9	0.9	3	23	701	722	700	722	0.96
11	29	0.0027	0.22	12.2	1.1	2	23	782	805	781	805	0.95
12	29	3.7	3e+02	2.3	0.0	2	23	814	836	814	836	0.84
13	29	0.1	8.4	7.2	0.1	2	23	843	865	842	865	0.95
14	29	1.6e-05	0.0013	19.3	1.2	1	23	873	895	873	895	0.98
15	29	1.2	94	3.9	0.8	3	23	923	945	921	945	0.83
16	29	0.00025	0.02	15.5	3.3	1	23	948	971	948	971	0.97
17	29	0.0005	0.04	14.5	0.3	2	23	978	1000	977	1000	0.96
18	29	0.0011	0.088	13.5	3.9	1	21	1021	1041	1021	1042	0.95
19	29	0.0032	0.26	12.0	1.8	2	23	1056	1077	1055	1078	0.93
20	29	0.53	43	5.0	1.4	1	23	1081	1104	1081	1104	0.94
21	29	0.016	1.3	9.8	0.9	2	23	1111	1134	1110	1134	0.92
22	29	3.6	3e+02	2.4	0.2	2	23	1142	1164	1142	1164	0.94
23	29	0.27	22	5.9	2.7	2	23	1202	1224	1202	1224	0.96
24	29	2.1	1.7e+02	3.2	0.1	2	23	1230	1252	1230	1252	0.95
25	29	6.8e-05	0.0055	17.3	0.2	1	23	1315	1338	1315	1338	0.96
26	29	0.029	2.4	9.0	3.6	1	21	1363	1383	1363	1384	0.93
27	29	0.59	48	4.9	1.3	2	23	1476	1498	1475	1498	0.93
28	29	0.13	11	6.9	0.3	2	23	1505	1527	1504	1527	0.94
29	29	5.7	4.6e+02	1.8	2.6	1	23	1538	1560	1538	1560	0.92

Sequence Information

Coding Sequence: ATGGAGCCCAGGGAACGTTACCAGGAGCTCTGCAGACTTTGCGCATCCTACGACGCCGTCAAGATGGACATCTTCGGTCAAGAGGGCAAGAACAGACAGCTCGTTGACAAGATACAAGCTTGTCTACCGTTTAAGATTGCAGAAGATGATCGACTACCAAAATGTCTCTGCTATCGGTGTATGTACAATTTGGAAAATTTCTATGATTTTAGAACAGCATGTGTTAACGCAGTAGCCCTCTTGGAAAGATGTTTACCACCTTCAGAATCGAATGGACGTGTTACGACTACCTTGACGTATTGTAATGATTCTGAGCTCTTTAAAGTAAGGGACAGTATACCAGTGTTAATTCCAGAAGCTCCTATTGTGAATCCAAATGCTGCCTTAGGCACACCACCCAGATTAAATTCTGATGGGGAGGCTGATCATGAGACAGAAGATATTGTTGACAATAGTGGTACAGATGAAGCAACAGTAGTTGATGATTCTGAAGATCGTCGTTCAGAAGAGTACGAAATGGATATGGAAACAAATCCAAGTGATTTTTTGGAAATGACCTCAATTGTCGCAGAAGAACCTGAAGAATCAGAATTAAGAAATCAGGAACTTCCCAGTAATTTGCCAGATCATACATCTCAACAGCATGAAGTTTATGTTTGTTCCTTGTGCAACAAAGCATTTAGTTCAAAGGGCCATTTGTCCTTACATGCACGTATTCACGTGGGTGCAGGTGATGTAATTGGTGAAAAAGTCCTTACAGATGATCATACATCATATAAAAGGCCCTATCAGTGTGATCTATGTCATAAATCGTATTCTACTGCAAAACATCGTTGGGGTCATGTTTCTACAACACatagAGGCCACCCGGCGGTGACATGTAGTTATTGTTCTCGGATCTACTCAACGCGAACAAATTTGGAAGAACATATAAAGTCGCGTCATGCTGGTCTTCCAGCGCTCACGGAGGTTCCTGTGAACAATGCTTATCGACCAGAAAATAGATGTCAGTGCAATGTTTGTGGAAAGATTTGCTCGGATGCCATGGAATTGAATCTTCATGGTAGAATTTGCAATGAAGGACAGAGATTGGATGTTCctgtgaaaaatgagattagagaTAATAATAAAATTATGGATAGTTCCGAAGCTTCGAGTATTGGTAGTGACGATGACAGCAAAGATTATAGAAGTGCAGAAGCTAAATTAGCCAAGAATCCTCAGTTAACAATATTAAAGCAAGCATTAACGAAAGGAGATAGTCTTAAGCGAGATTTCGAAGATAAATTTACAAATTGCAAACCAAAAAAATTACCTAAAACAGAACATAATGATATTCAAAATACTAGAAAATGGTATTGTGAATCTTGTCCTCAATGTTTTACATCAGTTGAGGATTTGAAAGAACATGAAGCAATTCACGATGTGGATAAACCATTTATTTGCATTTTGTGTAAAAAAGATTTTGTCCTTAAGTCTTCCTTAAGCAGACATATTCAAACATTACATGGTGTCGATCCATGTCCTATAGTAGAGAGTGATAAGTGTTTAAAGaaaattgttttacaaaattggaatgaATCTATAGAACTTGACTCGTACGAGGGTAAAACTTCTTTGGAATTTCCATTATCTCCAGAAACAAATGCAGAAAATGAAGAAGAACACGAGAGTGGGCAAGAAAATCTCATCGAAATTGAAACCGTATTCGTTTGTGAAATTTGTACTCGTGACTTTAACGATCGTGCGTCTCTTTGGCTTCATATACGCGCTACTCACAAAGAGTTTGCAGCATTTGCATGTGGTGTTTGTTTAAAAATTTGTGCAGACAATGCACAACTTTTGAATCACGTAAACATGTATCACGGTGGCTCGAAGTTATTACTTTCCGAACAAAGAAGGTATAGTTGTACAATTTGTGGTAGACAACATGATTCAAGGAAAAAGTTAATTGCGCATGTATCTATACATAATGTGGATCCAAATTATGATCCTGCAACATTTGTTCAGTTGAATAGTAATTATTATGGAGAGAATATTAATGGAAATGAAACTACGGAACAAATGCTTGATTACGAAGAAGATGGAGATAAAGTAGATTGTTACATTTGTTACAAATCGTTTCCTAATGAAGATCATTTAATACGGCACCAAAGAAATGCACATAGGTCAGAACAACTAGTGCCAACAGGAGATCCTTTAAATCCATCGAATTTAAATGGTGGCGGAAATAGAGCACAATATCATCTCTTTTTTGTTTGCGAACTTTGCGGTAGTTCTCATCCTAGCAAATGGGAACGCTGGTTGCATGTCAGCTCTTCTCACGATAACGAGTCGACCATAAAATGTGATCGTGAAGACTGTGGTAAAATCTTTGCTACGAAGTCTCTTAGAAACGAACATTTACAACATCATGTGATACAAGGTTCGTCTCCAAATACTTGTGAAATTTGTGGTAAACTTTGGGGCAGCAGAGTTGACTATTGGAAGCATGTCATGGGCGTTCATTCGGATACTGTTCCATTAATTTGCGGTGTTTGCCTGAAAGTGTTTCCAAATGTTTTACAATTAAGCACTCATGTTAAATCGAAGCATTGGCCATTAACGAACGGTGACTTCAGTTGCGACATTTGTGGTAGACCATACTCGAATAAATCAAAAATGTCCAGGCATAGAAAAATTCATGGTTTTGACGAAAGTTTCGACAATGGAGTTGAAAGTAGTGAAAATAAAATAGATGGACGAACGAGGAAAACAGAATTAAGTTGCGAACTTTGTGCAGATTTGAAATTTAGTAGTTTAGAAAAGTTATGTAATCATAGACGAATTGTCCATGGACTGTTCCCTTGTGATCTCTGCAATAAATGCTATGGAAGAACATCACACTTATGGAAACATGTGAATAGAGTTCACAAAGGTCACGAAGATGTAACATGTCCTTATTGTTTGAAAACTAGTGCTTCGAAAGATCATTTAGCCGCGCATATTTCGAAAATTCATAGGTACGAACCTGATTCTAGAAAGGATGGCAGACAATTTAAAACCGAAGAAGTCAGTTTGCATTATTGCGAGAAATGTAATAAAGGATTTCATAAGCGATATCTTTTGCGTAGACACATGAAGGGATGTCAGAATTATAGAAAAGATCCTGGAGCATTATTAACAAGATGTAGAGCTTGTGAAAGAATATTTAAGGATCGTGCTAGTTTGCAAAAGCATATTGAGAATCATCATAGTACATACACATGCCACCTTTGCAATGAAACGATTACTTCAAAATTAGGAATTATGACGCATAATAGGGTGAAGCATATGGATCATCCAGATTTAACTTGCAATTTTGGATCTTGCAGAAAACTGTTTAGGACAAAGGAAGACTTGGAAGCTCATAGGAAAGATCACAGATATCATACAACTCCCAATGTCTGTGATTTCTGCGGTGATACTGTCGAAAATAAGCTAAAACTGAAGATGCACGTGTTATCTCTTCATCGCAACGAAATTGGTGTTTCTTGCGGAGTGTGTTTAATACCAATGAAGGATCCGAAAGAACTGAAAAGTCACGTGGAAGAAATTCATTCCAGTGTTCTTTTAAGACCTAATACGTGTCAAGTTTGTGGAAAACAATACGCTTCGAAATGGAAGGCTTTCGACCATACCAAAAAATGTCATGGGAAAGTATTTAGGACTTGTAAGCAATGTTTAGCTGTTTTTACAGAAGATTCTGCAATTAGAGATCATTATGAAACGGTGCATAATATTCCCAAAGACCAACTTGCCGCGTTTGAACATAGATTGGATATTGGGTCGAAAAATGAAGATTTCGAGGTAGAGTCGCCTGACATAATAGTTAAAGAAGAACCAGATGATCTTGAATATGATGTTGATATGTGTGATGAGGATTCCAGTGATTCAAAAAGGAGAAGATCGTTAACGGATACTTATGATTGTGAAATGTGCCCTGAAATGTTCGTAAACAGTGATGCCCTTTCGAAACATTATCGAAACATGCATAATACAGATCCCGAAAGAATGTTTAAAAGGTTAAAACAAGATGAACAGAGAAGAATGCGtggaaaaattaattttttttgtAAAAATTGTAAGAGACAATTTTGTACGAAAACTTTATATTGGAACCATATCGCAACATGTAGAAGAAATATGCGAAAGGAAGATGAACTTTTGCCTCTAGAAAGTAATCGAGATGAACTTTTGAAAAACAACAATCAAATTAAGAAAGAAGAAGCTACATCAAATTTGAATATTCCTGACTTTAATCTCTTTGAAGATATAAATCTTCAGCTATCAGGCCAGAGACCTCTTCCAAATCTTATGCCACTTCCTCAAAGGGCTAAATCTTCAATGAAATGTTCAAGAAAGGATTCTAGGAAAGTATACGACGAATCAACAAATACAGAATGTGCTTGTGAAGTGTGTGGAAAACAATGGCCAGCAAAGAAACATTTGTGGCAACATCTAATTCGTTTCCATCGAGCAGAAGCAGCAGTCACTTGTGGCGTATGTCTCAAGCTTTGCAAAGATTATGATAATTTGGCAGAACATTTGAAAGCTGCACATGAAGCAATTCTTTCAACTGAAGGAAATAATTTTACATGTAAAACGTGCGGAAGGTATCATAACGcgcgtagtaaattattactacATACTAGTATTCATATAGGACATGCTGGTACTAGTACTTGGTGTACAAAGTGTCGAAAAAACATTACTGACGAAGCTACTCATTCAAATAGTTGTACTGGAAAACCAGAAGAAACGGAACAATTAAAAAGCACTGAAAAGGCAGAAGGAAGTCTGatagcggatgacacgatgattGAAGAGGTAGAAGGGGATTTTGAATCtgaagcagaagaagaagaagcagatACCGAAGAATCAGAAAGTGGTGATAGCAGTACTGAAGTAGAAGAAAACGAATCAGAGGGTGAATCTAGAGCAACAGGAGAAATTAGTAACTCCGACAGTGAAGATTCGGAAGAATTAGATAATTTAGAAATTGATGAAAAGAATATGGAACATTACGCTTTAGAACATCTCCAGGAAACCAAAAATGCAGAAGCAGATAAACATAACGCAGACTTAACGGATGACGAAGGACCTCCAGTTCTTAGTCCCATGATACCTTTGCTTCCTGAAAACATATCTGTAGAACAGCCAATAAGTCATAAAGTTGATTCTATAGTGCTTCTAACGACGAAAAAGATGGAAGTGTACAATTTGTCCGACATTCGAAATCAGTCCTCACAGTCGATAAACTTATACGAAAAACATTTATCTAACAATAAGTCTATGATGTTTGAATCTAAAATTCTTGCCAATCGAAAGGATGAAAATTTTGAGAATGCGAGGAATGAACTCGATGAAAATTCTAATGAGGAAAATGAGATAACGAACGAAGATAACGAAGAGATTGAAGAACATGAAGAATATGAGGAGAATGAAGGTAATGAAGATATTAAAGACATCGATGAAAACGACATCGAAGTAAATGAAGGAACCGAGGATACTGAAGATAACGGAGAAGTTGAAATACACGAAGACCCTGGAGAAATTGGAGCGCATGAAGTCTCTGAAGAGATTGAAATACCTGAAAACAATGAACAGACTGAAGGTAATGAAGACAATGAAGAAAATTGTGAATTTGAGGAAAAGGAAGAGATTGGAAGAAATGAAGAAATAGAAGAATTAGAAAAGAGTGGGCGAAACGAAGAAATGGGAGAATTGAACGAAAATGAGAGAAACGAAGAAATGGAAGAAGAAGACGAGAACGAAAGAAATGAAGACATGGAAGAAGTGGAGGAGAACGAAAGAAATGAAGACATGGAAGAAGAGGACGAGAACGAAAGAAATGAAGACATGGAAGAAGCGGACGAGAATGAAAGAAATGAAGATATGGAAGAATCAGACGAGAATGAGGGAATGGAAGAAATGGAAGAGTCGGTAGAAAACGAAGAAATGGATGAGTTGGAAGAAAATGAAAGAAACGAAGAAATGGATGAGTTGGAAGAAAACGAAGGAATGGAAGAATCAGATGAGCCTGAAGAAGATGAAGAAATCGAAGACATAGAAGAGAACGAAGAAAATGAAGACAATGATGAGAGAGTAGAAAGCATGCAATTGGATGATTTGGAAGGTGCTGTTTTGATGGTAGCTGATGGAGATCAGATACTGATTCAACAAGAAATGTTAGAAGATGGAAATGAAAGTTCAAATCAAGAATACGTTTACTCCACGCTTAGGTACAGTACAGAAGAGGACAGTGATGATGGAAAGAAGTGA
Protein Sequence: MEPRERYQELCRLCASYDAVKMDIFGQEGKNRQLVDKIQACLPFKIAEDDRLPKCLCYRCMYNLENFYDFRTACVNAVALLERCLPPSESNGRVTTTLTYCNDSELFKVRDSIPVLIPEAPIVNPNAALGTPPRLNSDGEADHETEDIVDNSGTDEATVVDDSEDRRSEEYEMDMETNPSDFLEMTSIVAEEPEESELRNQELPSNLPDHTSQQHEVYVCSLCNKAFSSKGHLSLHARIHVGAGDVIGEKVLTDDHTSYKRPYQCDLCHKSYSTAKHRWGHVSTTHRGHPAVTCSYCSRIYSTRTNLEEHIKSRHAGLPALTEVPVNNAYRPENRCQCNVCGKICSDAMELNLHGRICNEGQRLDVPVKNEIRDNNKIMDSSEASSIGSDDDSKDYRSAEAKLAKNPQLTILKQALTKGDSLKRDFEDKFTNCKPKKLPKTEHNDIQNTRKWYCESCPQCFTSVEDLKEHEAIHDVDKPFICILCKKDFVLKSSLSRHIQTLHGVDPCPIVESDKCLKKIVLQNWNESIELDSYEGKTSLEFPLSPETNAENEEEHESGQENLIEIETVFVCEICTRDFNDRASLWLHIRATHKEFAAFACGVCLKICADNAQLLNHVNMYHGGSKLLLSEQRRYSCTICGRQHDSRKKLIAHVSIHNVDPNYDPATFVQLNSNYYGENINGNETTEQMLDYEEDGDKVDCYICYKSFPNEDHLIRHQRNAHRSEQLVPTGDPLNPSNLNGGGNRAQYHLFFVCELCGSSHPSKWERWLHVSSSHDNESTIKCDREDCGKIFATKSLRNEHLQHHVIQGSSPNTCEICGKLWGSRVDYWKHVMGVHSDTVPLICGVCLKVFPNVLQLSTHVKSKHWPLTNGDFSCDICGRPYSNKSKMSRHRKIHGFDESFDNGVESSENKIDGRTRKTELSCELCADLKFSSLEKLCNHRRIVHGLFPCDLCNKCYGRTSHLWKHVNRVHKGHEDVTCPYCLKTSASKDHLAAHISKIHRYEPDSRKDGRQFKTEEVSLHYCEKCNKGFHKRYLLRRHMKGCQNYRKDPGALLTRCRACERIFKDRASLQKHIENHHSTYTCHLCNETITSKLGIMTHNRVKHMDHPDLTCNFGSCRKLFRTKEDLEAHRKDHRYHTTPNVCDFCGDTVENKLKLKMHVLSLHRNEIGVSCGVCLIPMKDPKELKSHVEEIHSSVLLRPNTCQVCGKQYASKWKAFDHTKKCHGKVFRTCKQCLAVFTEDSAIRDHYETVHNIPKDQLAAFEHRLDIGSKNEDFEVESPDIIVKEEPDDLEYDVDMCDEDSSDSKRRRSLTDTYDCEMCPEMFVNSDALSKHYRNMHNTDPERMFKRLKQDEQRRMRGKINFFCKNCKRQFCTKTLYWNHIATCRRNMRKEDELLPLESNRDELLKNNNQIKKEEATSNLNIPDFNLFEDINLQLSGQRPLPNLMPLPQRAKSSMKCSRKDSRKVYDESTNTECACEVCGKQWPAKKHLWQHLIRFHRAEAAVTCGVCLKLCKDYDNLAEHLKAAHEAILSTEGNNFTCKTCGRYHNARSKLLLHTSIHIGHAGTSTWCTKCRKNITDEATHSNSCTGKPEETEQLKSTEKAEGSLIADDTMIEEVEGDFESEAEEEEADTEESESGDSSTEVEENESEGESRATGEISNSDSEDSEELDNLEIDEKNMEHYALEHLQETKNAEADKHNADLTDDEGPPVLSPMIPLLPENISVEQPISHKVDSIVLLTTKKMEVYNLSDIRNQSSQSINLYEKHLSNNKSMMFESKILANRKDENFENARNELDENSNEENEITNEDNEEIEEHEEYEENEGNEDIKDIDENDIEVNEGTEDTEDNGEVEIHEDPGEIGAHEVSEEIEIPENNEQTEGNEDNEENCEFEEKEEIGRNEEIEELEKSGRNEEMGELNENERNEEMEEEDENERNEDMEEVEENERNEDMEEEDENERNEDMEEADENERNEDMEESDENEGMEEMEESVENEEMDELEENERNEEMDELEENEGMEESDEPEEDEEIEDIEENEENEDNDERVESMQLDDLEGAVLMVADGDQILIQQEMLEDGNESSNQEYVYSTLRYSTEEDSDDGKK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00218574;
90% Identity: -
80% Identity: -