Basic Information

Insect: Halictus quadricinctus
Gene Symbol: -
Assembly: GCA_028454245.1
Location: CM052121.1:971902-980374[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 29 6.7e-06 0.00054 20.3 1.0 1 23 218 240 218 240 0.98

2 29 0.0087 0.7 10.6 3.6 1 23 263 286 263 286 0.96

3 29 0.00014 0.012 16.2 0.5 2 23 293 315 292 315 0.96

4 29 0.0021 0.17 12.5 0.4 2 21 337 356 336 357 0.92

5 29 0.03 2.4 8.9 0.1 2 23 453 474 452 474 0.94

6 29 0.0032 0.26 11.9 0.6 1 23 480 503 480 503 0.92

7 29 0.00013 0.01 16.3 0.1 1 23 569 592 569 592 0.96

8 29 0.025 2.1 9.1 0.4 1 23 598 621 598 621 0.96

9 29 0.066 5.4 7.8 0.8 1 23 634 656 634 656 0.97

10 29 3.8e-05 0.0031 18.0 0.9 3 23 700 721 699 721 0.96

11 29 0.0045 0.37 11.4 1.0 2 23 781 804 780 804 0.95

12 29 3.3 2.7e+02 2.4 0.0 2 23 813 835 813 835 0.84

13 29 0.093 7.6 7.3 0.1 2 23 842 864 841 864 0.95

14 29 1.4e-05 0.0011 19.3 1.2 1 23 872 894 872 894 0.98

15 29 1.4 1.1e+02 3.6 2.9 2 23 921 944 920 944 0.94

16 29 0.00023 0.018 15.5 3.3 1 23 947 970 947 970 0.97

17 29 0.00067 0.054 14.1 0.6 2 23 977 999 976 999 0.96

18 29 0.00098 0.079 13.5 3.9 1 21 1023 1043 1023 1044 0.95

19 29 0.0029 0.23 12.1 1.8 2 23 1058 1079 1057 1080 0.93

20 29 0.47 38 5.1 1.4 1 23 1083 1106 1083 1106 0.94

21 29 0.041 3.3 8.4 1.0 2 23 1113 1136 1112 1136 0.89

22 29 3.3 2.7e+02 2.4 0.2 2 23 1144 1166 1144 1166 0.94

23 29 0.24 20 6.0 2.7 2 23 1204 1226 1204 1226 0.96

24 29 3.3 2.7e+02 2.4 0.1 2 23 1232 1254 1232 1254 0.94

25 29 0.00036 0.029 14.9 0.1 1 23 1317 1340 1317 1340 0.96

26 29 0.0076 0.61 10.7 2.5 1 20 1365 1384 1365 1386 0.93

27 29 0.53 43 4.9 1.3 2 23 1490 1512 1489 1512 0.94

28 29 0.31 25 5.7 0.2 2 23 1519 1541 1518 1541 0.94

29 29 5.1 4.1e+02 1.8 2.6 1 23 1552 1574 1552 1574 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	29	6.7e-06	0.00054	20.3	1.0	1	23	218	240	218	240	0.98
2	29	0.0087	0.7	10.6	3.6	1	23	263	286	263	286	0.96
3	29	0.00014	0.012	16.2	0.5	2	23	293	315	292	315	0.96
4	29	0.0021	0.17	12.5	0.4	2	21	337	356	336	357	0.92
5	29	0.03	2.4	8.9	0.1	2	23	453	474	452	474	0.94
6	29	0.0032	0.26	11.9	0.6	1	23	480	503	480	503	0.92
7	29	0.00013	0.01	16.3	0.1	1	23	569	592	569	592	0.96
8	29	0.025	2.1	9.1	0.4	1	23	598	621	598	621	0.96
9	29	0.066	5.4	7.8	0.8	1	23	634	656	634	656	0.97
10	29	3.8e-05	0.0031	18.0	0.9	3	23	700	721	699	721	0.96
11	29	0.0045	0.37	11.4	1.0	2	23	781	804	780	804	0.95
12	29	3.3	2.7e+02	2.4	0.0	2	23	813	835	813	835	0.84
13	29	0.093	7.6	7.3	0.1	2	23	842	864	841	864	0.95
14	29	1.4e-05	0.0011	19.3	1.2	1	23	872	894	872	894	0.98
15	29	1.4	1.1e+02	3.6	2.9	2	23	921	944	920	944	0.94
16	29	0.00023	0.018	15.5	3.3	1	23	947	970	947	970	0.97
17	29	0.00067	0.054	14.1	0.6	2	23	977	999	976	999	0.96
18	29	0.00098	0.079	13.5	3.9	1	21	1023	1043	1023	1044	0.95
19	29	0.0029	0.23	12.1	1.8	2	23	1058	1079	1057	1080	0.93
20	29	0.47	38	5.1	1.4	1	23	1083	1106	1083	1106	0.94
21	29	0.041	3.3	8.4	1.0	2	23	1113	1136	1112	1136	0.89
22	29	3.3	2.7e+02	2.4	0.2	2	23	1144	1166	1144	1166	0.94
23	29	0.24	20	6.0	2.7	2	23	1204	1226	1204	1226	0.96
24	29	3.3	2.7e+02	2.4	0.1	2	23	1232	1254	1232	1254	0.94
25	29	0.00036	0.029	14.9	0.1	1	23	1317	1340	1317	1340	0.96
26	29	0.0076	0.61	10.7	2.5	1	20	1365	1384	1365	1386	0.93
27	29	0.53	43	4.9	1.3	2	23	1490	1512	1489	1512	0.94
28	29	0.31	25	5.7	0.2	2	23	1519	1541	1518	1541	0.94
29	29	5.1	4.1e+02	1.8	2.6	1	23	1552	1574	1552	1574	0.92

Sequence Information

Coding Sequence: ATGGAGCCCAGGGAACGCTATCAGGAGCTCTGCAGACTTTGCGCATCCTACGACGCCGTCAAGATGGACATCTTCGGTCAAGAGGGCAAGAATAGACAGCTTGTTGACAAGATACAAGCTTGTCTACCGTTTAAGATTGCAGAAGATGATCGACTACCAAAATGCCTGTGTTACCGATGCATGTACAATTTGGAAAATTTCTATGATTTTAGAACAGCATGCGTCAATGCAGTGGCCCTCTTGGAAAGATGTTTACCACCATCAGAAAAAGTCGAAGGTGTCACAACCACCTTAAGATGCTGCGATGACTCAGAGCACTTGAAGCGAAAAAACAACATACCAATGTTGATCCCAGAAGCCCCTATTGTGAATCCTAATGCTGCCTTAGGTACACCGCCTAGATTAAATTCTGATGAGGAAGCAGATCACGAGTCCGAAGAAATTGTTGATAATAGTGGTACAGATGAAGCAACAATAGTGGACGACTCTGAGGATCATCGTTCAGAAGAATATGAAATGGATATGGAAACGAATCCAAGCGATTTTTTGGAGATGACTTCAATAGTTACTGAAGAACCGGAAGACTTAGAGTTGAAACATCAAGAACATTCTAATAATATTCCAGAGCATACATCTCAACAACACGAAGTTTACGTTTGTTCTTTGTGCAACAAAGCATTCAGTTCAAAGGGTCATTTATCTTTGCACGCGCGTATTCATGTCGGGGCTGGTGATGTAATTGGCGAAAAAGTTCTTACAGACGATCACACTTCCTATAAGAGACCCTACCAATGTGATCTTTGTCATAAATCTTATTCAACTGCAAAGCATCGTTGGGGTCATGTCTCAACATCTCACAGAGGCCACCCAGCAGTGACATGTGGTTATTGTTCCCGGATCTACTCAACTCGAACAAATTTGGAAGAACATATAAAATCACGTCACGCTGGTCTTCCAGCGCCCTTGGAAGTTCCTGTGAACAATACCTACCGACCAGAAAACAGATGCCAGTGTAATGTTTGCGGAAAGATTTGCACAGATGCCGTGGAATTAAATCTCCATGGCAGAGTCTGCATCGAAGAGCAAAGATCCGATTTTCTGACCAAGAGTGAGAACAAGGATACTAAAATTGTAGACAGTTGCGAAGGATCAAGCATTGGTAGCGACGAAGATAGCAAAGATTATAGAACTGCAGAAGCAAAACTGGCTAAAAATCCTCAATTAACGATCTTGAAGCAAGCACTAATGAAAGGTGATAGCCTTAAACGGGACTTTGAAGACAAACTTACCACAAATTGTAAACCAAAAAAACTGCCAAAAACAGAAAACACAGATGTTAAGAGTGATAAGAAATGGTATTGTGAATCGTGTCCTCAATTTTTCACTTCAGTGGAAAGCTTGAAAGAACATGAAGCAGTTCATGACGCTGATAAGCCGTACATCTGCATTCTATGCAAAAAAGATTTTGTTCTTAAGTCTTCCTTGAGTAGACATATTCAAACGTTACATGGTGTTGATCCGTATCCTATTGTAGAAAGCGATAAATGTTTAAAGAAGATTCTTTCACGGCATTGGAATGAATCGATGGATCTTGACTATGAACGAAAAACTACAGAATTTCCGTTATCCCCAGAGACGAATGCTGAAAACGAAGAGGATGATCATGAGAGTGGACAGGAAAATCTAATTGAAATTGAAACTGTATTTGTTTGTGAAATCTGTACCCGTGATTTTAATGATCGTGCTTCACTTTGGCTTCACATTCGAGCCACACACAAGGAATTTGCAGCATTTGCGTGTGGTGTTTGTTTGAAAATCTGTGCGGACAATACACAACTTCTGAATCACGTAAATATGTATCATGGTGGATCAAAATTGTTACTCTCTGAACAAAGAAGGTACAGCTGTACAATTTGTGGCAGACAACATGACTCTAGAAAGAAATTAATCGCACACGTATCCATACATAACGTAGATCCAAATTATGATCCAGCAACCTTTGTACAATTGAACAGTAATTATTACGGGGAGAATATTAATGGTAACGAAACTACGGAAACGATGCTTGACTATGAAGAGGAAGGAGACAAAGTAGACTGTTACATTTGTTACAAGTCATTTCCAAATGAAGATCATTTGATACGGCATCAAAGAAATGCACACAGATCTGAACAACCGATGCTGGCAGGAGACTCCTTAAATCAATCTAACTTAAATGGTGGTGGAAATAGAGCTCAATACCACTTGTTCTTTGTTTGTGAACTTTGTGGCAGTTCACATTCCAGTAAATGGGAACGTTGGTTACATGTCAGCTCATCTCATGCCAACGAACCAGCCATAAAATGTGATCGCGATGACTGTGGTAAAATTTTCGCAACTAAGTCTCTTAGGAACGATCACGTTCAACATCATGCAATTCAAGGCCCCTCTCCGAACACATGTGAAATTTGTGGTAAACTTTGGGGCAGCAGAGTGGACTATTGGAAGCACGTTATGGGCGTTCATTCAGATACTGTTCCATTGATTTGTGGTGTTTGTCTGAAGGTTTTCCCGAATGTGTTACAATTAAGTACCCACGTCAAATCGAAACATTGGCCATTAACAAATGGTGATTTTAGTTGTGATATATGCGGAAGACCGTATTCGAACAAATCGAAAATGTCTAGGCATAGAAAAATCCATGGTTTTGAAGAAACTTGCGACAACGGAGTTGAAAGTAATGAAAACAAACCTGATGGACGAGTCAGAGAAACTGAATTAAGTTGTGAACATTGTACAGACTTAAAGTTTGCTAGTTTAGAGAAGTTGTGTAATCACAGACGAATCGTCCATGGCCTTTTCCCTTGCGATCTCTGTAATAAATGTTATGGAAGGACCTCGCATCTATGGAAACATGTTAATAGAGTCCATAAAGGTCACGAGGATGTTACATGTCCTTATTGCTTAAAAACTAGCGCATCGAAAGATCATTTGGCTACCCATATTTCGAAAATTCACAGGTACGAACCTGATTCTAGAAAAGATGGAAAAGACACTAGGCAATTTAAAACCGACGAAGTTAGTTTACATTACTGTGAGAAGTGTAATAAAGGATTTCATAAGCGATACTTGTTACGTAGACATATGAAAGGATGTCAGAATTATAGGAAGGACCCTGGTGCGTTGCTTACTCGTTGCAGAGCTTGTGAAAGAATTTTTAAAGACCGCGCTAGTTTACAAAAGCATATAGAAAATCATCATAGCACGTACACTTGTCATCTTTGTAATGAAACGATCACTTCAAAATTAGGAATTATGACGCACAATAGAGTTAAACACATGGATCATCCGGATTTGACTTGTAATTTTGGAGCTTGTAAAAAGTTATTCAGGACAAAGGAAGATTTAGAATCACATAAAAAAGATCACAGGTATCATACAAATCCTAACGTTTGCGATTTCTGCGGTGACACAGTTGAGAATAAACTGAAATTGAAGATGCATGTACTGTCTCTTCATCGTAACGAAATTGGAGTATCTTGCGGAGTATGCTTAATCCCAATGAAAGATCCGAAAGAGCTCAAGGGTCATGTAGAAGAAGTTCACTCTAGTGTTCTTTCGAAACCGAATACCTGCCAAGTATGCGGTAAACAATATGCTTCAAAATGGAAAGCTTTTGACCATACTAAAAAATGTCATGGCAAAGTATTCCGGACCTGTAAACAATGTTTAGCTGTTTTCACAGAAGATTCTGCCATCAGAGATCATTATGAAATGGTACATAATGTTCCGAAAGATCAACTTGCAGCATTTGAATATAGGTTGGATATTGGATCAAAACATGATGATTATGAAATTGAGTCTCCCGACATTATTGTGAAAGAAGAACCAGACGATTTGGAGTATGATGTGGATCTGTGTGACGAGGATTCTAGCGATTCAAAAAGAAGAAGATTGTTAACCGATACATTTGATTGTGAAATGTGTCCTGAGATGTTTGTGAATAGCGACGCCCTTTCAATGCACTATCGTAACATGCATAATACAGATCCAGAAAGAATGTTCAAGAGACTGAAACAGGAAGAACAAAGAAAAATGCGTGGAAAACTAAGTTTCGCTTGTAAGAATTGTAAGAAACAATTTTGTACAAAGACATTGTATTGGAATCATATTGGAACTTGCAGGAGAAACGTTTTGCGAAAAGAAGAGGAACTTTCGTCTTTACAGAATGATATGTTAGATAATCAAGAAGGTGTACTTGATAATCAAGAAGAAATTTTGAAAAATAACAATCAAATTAAAAAAGAAGAAAGTACATCAAATTTGAATATCCCAGACTTTAATCTATTTGAAGACATAAATCTTCAATTATCAGGTCAAAGACCTCTTCCAAATCTGATGCCGCTATCTCAGAGGGTAAAATCGTCAATGAAATGTTCAAGAAAAGATTCGAGAAAAGTGTATGATGAATCAACGAATACAGAATGTGCTTGCGAAGTCTGTGGAAAACAGTGGCCAGCGAAGAAACATTTATGGCAACATTTAATTCGCTTCCATCGAGCAGAAGCTGCGGTTACCTGTGGAGTGTGTCTGAAACTCTGCAAGGACTATGATGATTTAGCAGAACATTTGAAAGCTGCACATGCTGCAATCCTTTCGTGCGAAGGAAACAATTTCACGTGTAAAACTTGTGGCAGATATCACAATGCACGCAGTAAGCTATTGTTACACACAAGTATTCATATCGGACACGCAAGTAATGGCACTACATGTCCGAAATGCTATAAGAATATTACTGACGAAACTGATCATTCTACTACATGTACTGGAAAAACAGAAGAAGAGCATTTGAAGAACGAGAAGAAGCCAGAAGGAAGCCTGATAACGGATGATGCTATGATAGAAGAAGTGGAAGAAGGGGACTTTGAGTCTGAGGCAGAAGAGGCAGATTCAGCAGAATCAGATAGTGGTAGTAGCACAGAGGTAGAAGACAATGATTCTGAAGGAGAATCCAGGGCCACAGGTGAAATTACATACAATTCAGATACTGATGATGATTCCGAAGAATTGGCTAATCTAGAAATGGATAAGAATATGCAGCACTTTGCTTTGGAAGGTCTTCAGGAATTCAAAGATACTGAAGCAGAAAAGAACGACGTTGGTTTGTCAGATGATGATGGCCCTCCTGTGCTCAGCCCTATGATGCCTCTACTAACTGGGAACATGTCTGGAGAACAATCGATGGGAAAGAAATATTCTAAAGAAATGGGACTCTGTAATTTAGCAGAAATTCAAAATCAATCCTCTCCCAAATCAGTAAATTTCTATGGCAAGGGTTTGTCTAACAATGAATCATTGGATTTTGAATCTGAAACATTTATGAATCGAAGCGACGAGGAATACGAAGGCGCGAAAAATGAATACGACGAAAATTCTATGGAAGAGAATGAAGACAGTGGAGAGAATGAAGTTAATGAAGAAGCAGCAGACCATGAAGAACATGAAGAAAACGAAGAAGTCGAGCAGAACGAGGATAACGAAGAGAGTCATGAGATGGAGGTAAACGAAGAGAGTCATGAGATGGTGGTAAACGAAGAGAGTCGTGAGATGGAGGTAAACGAAGAGAGTCATGAGATAGAGGTAAACGAAGAAAGTCATGAGATGGAGGTAAACGAAGACAGTGAAGGAAGTGAATTGTATGAAGAAACTGAAGATAATGAAGACAATGAATCGAATGAAGAAATTGAAGATAACGAAGACAACGAGGAACAAGAACAAAATTATGAGAATGACGAAAATGAAGAAAATGGAGAGAGCGATGAAAATGAAGAAAACGAGGAAAAAGTAGAAGGCATGCAATTGGATGATTTAGAGAATGCTGTACTAATGGTGACCGAAGGAAATGAAATATTAATACAACAAGATATATTAGAAGACGGAATTGAAAACGTAAATCAAGCATATGTTTATTCTACGCTTGCTTACAGTACTGAAGAAGACAGTGATGATGCAGGAAAATGA
Protein Sequence: MEPRERYQELCRLCASYDAVKMDIFGQEGKNRQLVDKIQACLPFKIAEDDRLPKCLCYRCMYNLENFYDFRTACVNAVALLERCLPPSEKVEGVTTTLRCCDDSEHLKRKNNIPMLIPEAPIVNPNAALGTPPRLNSDEEADHESEEIVDNSGTDEATIVDDSEDHRSEEYEMDMETNPSDFLEMTSIVTEEPEDLELKHQEHSNNIPEHTSQQHEVYVCSLCNKAFSSKGHLSLHARIHVGAGDVIGEKVLTDDHTSYKRPYQCDLCHKSYSTAKHRWGHVSTSHRGHPAVTCGYCSRIYSTRTNLEEHIKSRHAGLPAPLEVPVNNTYRPENRCQCNVCGKICTDAVELNLHGRVCIEEQRSDFLTKSENKDTKIVDSCEGSSIGSDEDSKDYRTAEAKLAKNPQLTILKQALMKGDSLKRDFEDKLTTNCKPKKLPKTENTDVKSDKKWYCESCPQFFTSVESLKEHEAVHDADKPYICILCKKDFVLKSSLSRHIQTLHGVDPYPIVESDKCLKKILSRHWNESMDLDYERKTTEFPLSPETNAENEEDDHESGQENLIEIETVFVCEICTRDFNDRASLWLHIRATHKEFAAFACGVCLKICADNTQLLNHVNMYHGGSKLLLSEQRRYSCTICGRQHDSRKKLIAHVSIHNVDPNYDPATFVQLNSNYYGENINGNETTETMLDYEEEGDKVDCYICYKSFPNEDHLIRHQRNAHRSEQPMLAGDSLNQSNLNGGGNRAQYHLFFVCELCGSSHSSKWERWLHVSSSHANEPAIKCDRDDCGKIFATKSLRNDHVQHHAIQGPSPNTCEICGKLWGSRVDYWKHVMGVHSDTVPLICGVCLKVFPNVLQLSTHVKSKHWPLTNGDFSCDICGRPYSNKSKMSRHRKIHGFEETCDNGVESNENKPDGRVRETELSCEHCTDLKFASLEKLCNHRRIVHGLFPCDLCNKCYGRTSHLWKHVNRVHKGHEDVTCPYCLKTSASKDHLATHISKIHRYEPDSRKDGKDTRQFKTDEVSLHYCEKCNKGFHKRYLLRRHMKGCQNYRKDPGALLTRCRACERIFKDRASLQKHIENHHSTYTCHLCNETITSKLGIMTHNRVKHMDHPDLTCNFGACKKLFRTKEDLESHKKDHRYHTNPNVCDFCGDTVENKLKLKMHVLSLHRNEIGVSCGVCLIPMKDPKELKGHVEEVHSSVLSKPNTCQVCGKQYASKWKAFDHTKKCHGKVFRTCKQCLAVFTEDSAIRDHYEMVHNVPKDQLAAFEYRLDIGSKHDDYEIESPDIIVKEEPDDLEYDVDLCDEDSSDSKRRRLLTDTFDCEMCPEMFVNSDALSMHYRNMHNTDPERMFKRLKQEEQRKMRGKLSFACKNCKKQFCTKTLYWNHIGTCRRNVLRKEEELSSLQNDMLDNQEGVLDNQEEILKNNNQIKKEESTSNLNIPDFNLFEDINLQLSGQRPLPNLMPLSQRVKSSMKCSRKDSRKVYDESTNTECACEVCGKQWPAKKHLWQHLIRFHRAEAAVTCGVCLKLCKDYDDLAEHLKAAHAAILSCEGNNFTCKTCGRYHNARSKLLLHTSIHIGHASNGTTCPKCYKNITDETDHSTTCTGKTEEEHLKNEKKPEGSLITDDAMIEEVEEGDFESEAEEADSAESDSGSSTEVEDNDSEGESRATGEITYNSDTDDDSEELANLEMDKNMQHFALEGLQEFKDTEAEKNDVGLSDDDGPPVLSPMMPLLTGNMSGEQSMGKKYSKEMGLCNLAEIQNQSSPKSVNFYGKGLSNNESLDFESETFMNRSDEEYEGAKNEYDENSMEENEDSGENEVNEEAADHEEHEENEEVEQNEDNEESHEMEVNEESHEMVVNEESREMEVNEESHEIEVNEESHEMEVNEDSEGSELYEETEDNEDNESNEEIEDNEDNEEQEQNYENDENEENGESDENEENEEKVEGMQLDDLENAVLMVTEGNEILIQQDILEDGIENVNQAYVYSTLAYSTEEDSDDAGK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00218574;
90% Identity: iTF_00966151;
80% Identity: -