Mlig001147.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Megachile ligniseca
Gene Symbol
lola
Assembly
GCA_945859565.1
Location
CAMAOB010000006.1:2026171-2028369[+]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 5 0.28 4.2e+02 1.1 0.3 30 40 181 191 181 197 0.76
2 5 4.4e-07 0.00067 19.7 0.0 2 38 201 237 200 243 0.84
3 5 6e-11 9.1e-08 32.0 0.0 5 39 254 287 251 294 0.85
4 5 0.14 2.2e+02 2.0 0.0 21 34 321 334 307 339 0.80
5 5 1.5e-11 2.2e-08 34.0 0.1 4 39 365 400 362 405 0.93

Sequence Information

Coding Sequence
ATGTCTGAGGTTATTAACCAACATGAGATTAATCAGAGCTACTGGTTTAAATGGAATGATTATCAAAATCATTTATCCGATGTAGTTAGACAACTTTTGGATGAAGATTGCATGGTGGATGTTACCTTAGCAGCTGCGGGAGAACGAATTCATGCTCATCGAATAGTCCTCTGTGCTTGTAGCACGTTATTTCGAGATATATTGAGTCAAGTAAATGAAGATCATCCGACAATAATATTGAGCGATATATCTGCTCAAGATATAAAATCTATTGTAGAATTTACTTATCATGGAGAAGTAAGGGTTCCAGTTGATAATATCAGCAGTTTGTTGGATGCTGCACGTTCTTTAAAAATATGTGGTCTTATCGAGATTGATGGACTTGATGAAAGTGATTCAGTTATAAGCTCAAAAGATTTCAATGATAATAATGAAGAACCAACAACCATAATTAGTGAAGAGACAGAAGAAAATGTTATTAGTGCATTACAACATAGTTATGAAGATTTAGAAGATCAACAAAAGGAACAAATTACTGAAAATTCTACTTTAAATAAAAGAAAAAAACGTAGACGCGATGCAACAAAAAGAGATTATAGTGATGATATGTTAGCATCTGCAATCAACGATTTAAAATCAGGTCAAACATTGATAGAAGCTTCTACTAAGCATAACATACCACGTTCAACATTATACATGCGTGCTAAAGCATTAGGTATACATTTAAATGCATCAAGAAATGAATATCCAGCAGAATGTATGAAAGCTGCTATAAATGCAGTAATTGGTGGATCAAGTTTACAGCATGCATCAGAAATGTTTAGTATACCAAAAACTGTGTTATGGCGAAGAATTCAGAAAGAAGGTTATCAAATATTACGATCTGAAATGAAAAGGTCTTATGGTTCTGACAAACGGGAAGCAGCAGTTAAAGCTTTAGAAAGGGGAGAAAACCTAACAAAAGTCGCACTTGAATTCAAAATTCCAAAGACAACCTTGTTTAGGGACAAAGCTCGACTGGTGGATGAAGGGAAATTGCCATTATCCTTTTGGAAAAAACGTAAAACAGAAAATGAGGAGTTAAAAAAATCTCGTTTAGAAGAAGCTGTCGCTGCCTGTAAAGGAGGAAAAATGTCACAAGCCGCGGCATCAATGACTTATCATATTCCTAAAACAACGATATGGAGGCGTCTTCAACAAGATGGTAAAAAGTCGGAGCGACTACTAAATTCAAGGAAACAAAGAATAACAGACCCTAAACATAATTCAGAAACCAAGGTACAGGAAGGTTCTGATTTTACATATTGTGAGGTTTCATCAGAAATTCCTATAACTTATATCGATGAAAATAGTATACCTGAGGATTCTGTGATAATATTAACAGCAGAAGATATGGATGGACTGAATTTAGAAGAGGGACGACAAATTATTGTTAATTCTGAATCGGTGCAAGAGTATGTTCCCTGTGCTATAAGTATTGAAGAGGATTCAAATTATTCGCAGACGGAAAGTTAG
Protein Sequence
MSEVINQHEINQSYWFKWNDYQNHLSDVVRQLLDEDCMVDVTLAAAGERIHAHRIVLCACSTLFRDILSQVNEDHPTIILSDISAQDIKSIVEFTYHGEVRVPVDNISSLLDAARSLKICGLIEIDGLDESDSVISSKDFNDNNEEPTTIISEETEENVISALQHSYEDLEDQQKEQITENSTLNKRKKRRRDATKRDYSDDMLASAINDLKSGQTLIEASTKHNIPRSTLYMRAKALGIHLNASRNEYPAECMKAAINAVIGGSSLQHASEMFSIPKTVLWRRIQKEGYQILRSEMKRSYGSDKREAAVKALERGENLTKVALEFKIPKTTLFRDKARLVDEGKLPLSFWKKRKTENEELKKSRLEEAVAACKGGKMSQAAASMTYHIPKTTIWRRLQQDGKKSERLLNSRKQRITDPKHNSETKVQEGSDFTYCEVSSEIPITYIDENSIPEDSVIILTAEDMDGLNLEEGRQIIVNSESVQEYVPCAISIEEDSNYSQTES

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00118108;
90% Identity
iTF_00964385; iTF_00964579; iTF_00963944; iTF_00961930; iTF_01122988; iTF_00961741; iTF_01122351; iTF_00962612; iTF_00962422; iTF_01123161; iTF_01122555; iTF_00963774; iTF_00963296; iTF_00219713; iTF_00225153; iTF_00231233; iTF_00217666; iTF_00231906; iTF_00228067; iTF_00228579; iTF_00228772; iTF_00225829; iTF_00222438; iTF_00226694; iTF_00227878; iTF_00220679; iTF_00215625; iTF_00223978; iTF_00229450; iTF_00760906; iTF_00224651; iTF_00227371; iTF_00214317; iTF_00219213; iTF_00223789; iTF_00233326; iTF_00226511; iTF_00230127; iTF_00232079; iTF_00982383; iTF_00216304; iTF_00216496; iTF_00221840; iTF_00222000; iTF_00761072; iTF_00220497; iTF_00221361; iTF_00215122; iTF_00217170; iTF_00232530; iTF_00217843; iTF_00219028; iTF_00684084; iTF_01419732; iTF_01420852; iTF_00983061; iTF_00214486; iTF_00219894; iTF_00224470; iTF_00229270; iTF_00231414; iTF_00232694; iTF_00225335; iTF_00230615; iTF_00227192; iTF_00229945; iTF_00233145; iTF_00221179; iTF_00226011; iTF_01424283; iTF_01424475; iTF_00214940; iTF_00215804; iTF_00218524; iTF_00216989; iTF_00218333; iTF_00223293; iTF_00230781; iTF_00222622; iTF_00223102; iTF_00982206; iTF_01421023; iTF_00360129; iTF_00361006; iTF_00360825; iTF_00360315; iTF_01065475; iTF_01069571; iTF_01070467; iTF_01070276; iTF_01067045; iTF_01067717; iTF_01068201; iTF_01066859; iTF_01067531; iTF_01065677; iTF_01069774; iTF_01066160; iTF_01068400; iTF_01069080; iTF_01068890; iTF_01066366; iTF_00625415; iTF_00625602; iTF_00684715; iTF_00684257; iTF_00684872; iTF_00140684; iTF_00141749; iTF_00140502; iTF_00141920; iTF_00983533; iTF_00983685; iTF_00118108; iTF_00117916; iTF_01539519; iTF_01539706;
80% Identity
iTF_00963296;