Obic003833.1
Basic Information
- Insect
- Osmia bicornis
- Gene Symbol
- lola
- Assembly
- GCA_907164935.1
- Location
- NC:8952600-8955108[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.5e-06 0.0015 18.6 0.0 2 38 201 237 200 243 0.82 2 4 1e-10 9.8e-08 32.0 0.0 5 39 254 287 251 294 0.85 3 4 0.24 2.3e+02 2.0 0.0 21 34 321 334 307 339 0.80 4 4 2.4e-11 2.4e-08 34.0 0.1 4 39 365 400 362 405 0.93
Sequence Information
- Coding Sequence
- ATGTCCGAGGTTATTAACCAACATGAAATTAATCAGAGCTACTGGTTCAAATGGAATGATTATCAAAATCATTTATCCGATGTAGTTAGACAACTTTTGGATGAGGATTGCATGGTGGATGTTACATTAGCAGCTGCAGGAGAACGAATTCATGCTCATCGAATAGTCCTCTGTGCTTGCAGCACTTTATTTCGAGAGATATTAAGTCAAGTAAATGAAGATCATCCAACAATAATATTGAGCGACATATCTGCTCAAGACATAAAATCTATTGTAGAATTTACTTATCATGGTGAAGTAAGGGTCCCAGTTGAGAATATCAGTAGTTTGTTAGATGCTGCACGTTCTTTAAAAATATGTGGCCTTATTGAGATTGATGGACTTGATGAAGGTGATTTAGTAACAAACACAAAAGATTTCAATGATAATAGCGAAGAATCAACAACTATAATCAATGAGGAGACAGAAGAAAATGTTATCAATGCGTTGCAACATAGTTATGAAGAATTGGAGGATCAACAAAAGGAACAGATTACTGAGAATATCACTTTgcataaaaagaagaaacgcaGACGCGATGCGACGAAAAGAGATTATAGCGATGATATGTTAGAATCTGCAATCAATGACTTAAAATCAGGTCAAACATTGATAGAAGCTTCTACTAAGCACAATATACCCCGTTCAACGTTATACATGCGTGCCAAAGCATTAGGTATACATTTAAATGCGTCAAGAAATGAATATCCAGCTGAGTGTATGAAAGCTGCTATAAATGCAGTAATTGGTGGATCAAGTTTACAGCATGCATCAGAAATGTTTAGTATCCCAAAAACTGTATTGTGGAGAAGGATTCAGAAAGAAGGCTATCAAATATTACGTTCTGAAATGAAAAGGTCTTATGGTTCTGACAAACGAGAAGCGGCAGTGAAAGCATTAGAAAGGGGGGAGAATCTAACAAAAGTCGCGCTTGAATTCAAAATTCCAAAGACTACTTTATTCAGAGATAAAGCTCGATTGGTGGACGAGGGGAAATTACCACTGTCGTTTTGGAAAAAACGTAAAACAGAGAATGAGGAATTAAAAAAGTCTCGTTTGGAAGAAGCTGTCGCCGCGTGTAAGGGAGGGAAAATGTCACAAGCTGCGGCATCCATGACTTATCATATTCCTAAAACAACTATATGGAGGCGTCTTCAACAAGATGGTAAAAAATCGGaacgattattaaattcaaGAAAGCAAAGAGTAATAGATCCTAAACATAATTCAGAAACTAAAGTGCAGGAAGGTTCTGATTTTACATATTGTGAGGTTTCATCAGAGATTCCTATAACTTATATAGATGAAAATAGTATACCTGAGGATTCTGTGATAATATTAACAGCAGAAGATATGGACGAACTTAATTTAGAAGAAGGACGacaaattattgttaattcCGAATCAGTACAAGAATATGTTCCTTGTGCTACaagtattgaagaaaattcaaattattcgCAGACTGAGAGTTAG
- Protein Sequence
- MSEVINQHEINQSYWFKWNDYQNHLSDVVRQLLDEDCMVDVTLAAAGERIHAHRIVLCACSTLFREILSQVNEDHPTIILSDISAQDIKSIVEFTYHGEVRVPVENISSLLDAARSLKICGLIEIDGLDEGDLVTNTKDFNDNSEESTTIINEETEENVINALQHSYEELEDQQKEQITENITLHKKKKRRRDATKRDYSDDMLESAINDLKSGQTLIEASTKHNIPRSTLYMRAKALGIHLNASRNEYPAECMKAAINAVIGGSSLQHASEMFSIPKTVLWRRIQKEGYQILRSEMKRSYGSDKREAAVKALERGENLTKVALEFKIPKTTLFRDKARLVDEGKLPLSFWKKRKTENEELKKSRLEEAVAACKGGKMSQAAASMTYHIPKTTIWRRLQQDGKKSERLLNSRKQRVIDPKHNSETKVQEGSDFTYCEVSSEIPITYIDENSIPEDSVIILTAEDMDELNLEEGRQIIVNSESVQEYVPCATSIEENSNYSQTES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00118108;
- 90% Identity
- iTF_00963105;
- 80% Identity
- iTF_01122988;