Bopu006939.1
Basic Information
- Insect
- Bombus opulentus
- Gene Symbol
- lola
- Assembly
- GCA_034509555.1
- Location
- CM067414.1:12327752-12329966[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 0.71 1.2e+03 -0.5 0.4 30 45 180 196 178 196 0.80 2 5 1.9e-07 0.00031 20.5 0.0 2 38 200 236 199 242 0.86 3 5 1.8e-11 3e-08 33.4 0.0 5 39 253 286 250 293 0.85 4 5 0.11 1.9e+02 2.0 0.0 21 34 320 333 306 338 0.80 5 5 1.1e-11 1.7e-08 34.1 0.1 4 39 364 399 361 405 0.92
Sequence Information
- Coding Sequence
- ATGTCCGAAATTACTAACCAACATGAGATCAATCAGAGTTATTGGTTTAAATGGAATGATTATCAAAACCATCTCTCCGATGTAGTTAGACAACTTTTAGAGGAGGACTGTATGGTAGACGTTACCCTGGCTGCGGGCGGGGAACGTATTCATGCTCATCGTATAGTTCTCTGCGCTTGTAGCACTTTATTTCGAgaaatattgAGTCAAGTAAATGAAGATCATCcaacaataatattaagcGATATATCTGCTCAAgatataaaatctattatagaatttacttACCATGGAGAAGTGAGAGTACCAGTTGAAAATATTAGTACCTTATTAGATGCGGCACGTTCACTAAAAATTTGTGGCCTTATTGAAATTGATGGACTTGAAGAAACTGACTCAGTTGTAAgcaataagaattttaatgataataatgaaGAGCCAATGACTGTAATTAGTGAGActgaagaaaatgttattaatgcGTTGCAACATAGTTATGAAGATTTGGAAGATCAACAAAAAGATGAGGTCGTCGAAAATTCcactttgaataaaaaaaagaaacgcagGCGCGATACAACAAAAAGAGATTATAGCGAAGATATGTTGGCGGCGGcaattaatgatttaaaagCAGGGCAGACATTAATAGAAGCTTCTACTAAACATAATATACCACGTTCAACTTTATACATGCGTGCTAAAGCATTAGGTATACATTTAAACGCATCAAGAAACGAATATCCGGCAGAGTGTATGAAAGCTGCTATAAATGCGGTAATTGGTGGATCAAGCCTACAACATGCATCAGAACTTTTTAGTATACCAAAGACTGTATTATGGAGGAGGATTCAGAAAGAAGGATATCAAATATTACGTTCGGAAATGAAGAGGTCTTATGGATCAGATAAACGGGAAGCTGCAGTCAAGGCTttagaaagaggagaaaatttaacaaaagtaGCACTTGAattcaaaATTCCGAAAACTACGTTATTTAGAGATAAGGCGCGATTGGTAGATGAAGGAAAATTGCCATTATCATTTTGGAAGAAACGTAAGACGGAAAatgaagaattgaaaaaatctCGTTTGGAAGAAGCTGTTGCTGCATGTAAAGGAGGGAAAATGTCGCAAGCAGCAGCATCAATGACTTACCATATTCCAAAAACAACGATATGGAGACGTCTTCAACAAGATGGTAAAAAGTCAGAGCGCTCGTTAAGTTCAAGGAAACAAAGAATAGCGGATTCTAAACATAATACAGAAACAAAGGTACAAGAAGGATCTGATTTTACATATTGCGAGgtTTCGTCAGAAATTCCTATAACTTATATAGATGAAAATAGTATACCTGAAGATTCTGTGATAATATTAACGGCAGAAGATATGGATGGACTTAATTTAGAAGAGGGACGACAAATTATTGTTAACTCAGAATCGGGACAAGAATATGTTCCTTGTGCTATaagtatcgaagaaaattcaaactaTTCACAAACTGAAAGTTAG
- Protein Sequence
- MSEITNQHEINQSYWFKWNDYQNHLSDVVRQLLEEDCMVDVTLAAGGERIHAHRIVLCACSTLFREILSQVNEDHPTIILSDISAQDIKSIIEFTYHGEVRVPVENISTLLDAARSLKICGLIEIDGLEETDSVVSNKNFNDNNEEPMTVISETEENVINALQHSYEDLEDQQKDEVVENSTLNKKKKRRRDTTKRDYSEDMLAAAINDLKAGQTLIEASTKHNIPRSTLYMRAKALGIHLNASRNEYPAECMKAAINAVIGGSSLQHASELFSIPKTVLWRRIQKEGYQILRSEMKRSYGSDKREAAVKALERGENLTKVALEFKIPKTTLFRDKARLVDEGKLPLSFWKKRKTENEELKKSRLEEAVAACKGGKMSQAAASMTYHIPKTTIWRRLQQDGKKSERSLSSRKQRIADSKHNTETKVQEGSDFTYCEVSSEIPITYIDENSIPEDSVIILTAEDMDGLNLEEGRQIIVNSESGQEYVPCAISIEENSNYSQTES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00118108;
- 90% Identity
- iTF_00963105;
- 80% Identity
- iTF_00223978;