Nfuc011220.1
Basic Information
- Insect
- Nomada fucata
- Gene Symbol
- lola
- Assembly
- GCA_948146005.1
- Location
- OX411278.1:30260463-30262679[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 6.6e-07 0.00092 18.5 0.0 5 38 202 235 198 241 0.82 2 5 6.1e-11 8.6e-08 31.4 0.0 5 39 252 285 250 292 0.84 3 5 0.015 22 4.5 0.0 7 34 306 332 302 338 0.83 4 5 4.1e-13 5.8e-10 38.4 0.0 4 39 363 398 360 404 0.92 5 5 0.96 1.4e+03 -1.2 0.0 31 44 405 418 403 419 0.83
Sequence Information
- Coding Sequence
- ATGTCCGAGATTGATAACCAACATGAGATTAACCAGAGCTATTGGTTTAAATGGAACGACTACCAAAATCATTTGTCCGATGTAGTTAGACAACTTCTGGAAGAGGATTGTATGGTGGACGTTACCCTGGCTGCTGCCGGGGAACGTATTCATGCTCATCGAATAGTTCTTTGTGCTTGTAGCACTTTATTTCGAGAAATATTGAGTCAAGTAAATGAAGATCATCCGACAATAATATTAAGCGACATATCTGCTCAAGATATTAAATCTATTATAGAATTTACTTACCATGGGGAAGTACGAGTTCCAGTCAACAATATTAGCAGTTTATTAGATGCAGCACGTTCCTTAAAAATTTGTGGCCTGCTCGAGATCGATGGACTAGATGAGAGTGACTCTGTTGAGAACACTAAAGATTTTAACGATAACAATGAAGAGCCGATGTCTGTAATCAGTGAGACTGACGAAAGTGTTATTAACGAACTGCAACATGACTACGAGGATTTAGATGAACAAAAACAGGAGATTATCGAGGACTCCACTGTAAATAGAAAGAAGAAACGTAGGCGCGATACAATGAAACGAGATTACAGCGACAATATGTTAGCATCTGCAATCCATGATTTAAAGTCTGGTCAAACATTAATAGAAGCTTCTACTAAACATAATATACCACGTTCAACTTTATACATGCGTGCTAAAGCATTAGGTATACACTTGAACGCATCTAGAAACGAATATCCTGTAGAATGTATGAAAGCAGCTATAAACGCAGTAATAGATGGATCAAGTTTGCAGCATGCGTCAGAAATGTTTAGTATACCTAAGACTGTACTATGGAGGAGGATTCAAAAGGAAGGGTATCAAATGTTGCGTTCAGAAATGAAACGATCTTACGGTTCTGATAAACGGGAAGCAGCGGTTAAAGCTTTACAAAGGGGAGAGAATTTGACTAAAGTAGCACTTGAGTTTAAAATTCCAAAGACTACTTTATTTAGAGACAAAGCTCGACTGGTAGACGAAGGTAAATTACCTTTATCATTTTGGAAGAAACGCAAAGCGGAAAACGAACAATTAAAGAAGTCACGCTTGGAAGAAGCTGTTGCTGCTTGTAAAGGTGGAAAAATGTCGCAAGCAGCAGCATCGATGACTTATGATATTCCGAAGACGACGATATGGAGACGTCTTCAGCAGGATGGTAAAAAATCAGAGCGCTCATTAAGCTCGAGGAAGCAAAGAATAACAGACTCCAAACATAATGCAGAAACCAAAGTACAAGAAGGATCTAATTTCACGTATTGCGAGGTTTCATCCGAAATTCCTATAACTTACATAGACGAAAATAGTATACCTGAAGATTCTGTGATAATATTAACGGCTGAAGATATGGACGGACTTAATTTAGAAGAGGGACGGCAAATTATTGTTAATTCAGAATCTGGACAAGAATACGTTCCTTGTGCTATTAGTATCGAAGAAAACTCCAATTATTCGCAGACAGAAAGTTAG
- Protein Sequence
- MSEIDNQHEINQSYWFKWNDYQNHLSDVVRQLLEEDCMVDVTLAAAGERIHAHRIVLCACSTLFREILSQVNEDHPTIILSDISAQDIKSIIEFTYHGEVRVPVNNISSLLDAARSLKICGLLEIDGLDESDSVENTKDFNDNNEEPMSVISETDESVINELQHDYEDLDEQKQEIIEDSTVNRKKKRRRDTMKRDYSDNMLASAIHDLKSGQTLIEASTKHNIPRSTLYMRAKALGIHLNASRNEYPVECMKAAINAVIDGSSLQHASEMFSIPKTVLWRRIQKEGYQMLRSEMKRSYGSDKREAAVKALQRGENLTKVALEFKIPKTTLFRDKARLVDEGKLPLSFWKKRKAENEQLKKSRLEEAVAACKGGKMSQAAASMTYDIPKTTIWRRLQQDGKKSERSLSSRKQRITDSKHNAETKVQEGSNFTYCEVSSEIPITYIDENSIPEDSVIILTAEDMDGLNLEEGRQIIVNSESGQEYVPCAISIEENSNYSQTES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00118108;
- 90% Identity
- iTF_00963105;
- 80% Identity
- iTF_01067045;