Olig001118.1
Basic Information
- Insect
- Osmia lignaria
- Gene Symbol
- lola
- Assembly
- GCA_012274295.1
- Location
- NW:3837355-3841157[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 2.4 4.7e+03 -3.4 0.3 32 44 183 196 183 197 0.69 2 5 3.1e-07 0.00061 18.6 0.0 2 38 201 237 200 243 0.82 3 5 2e-11 4e-08 32.0 0.0 5 39 254 287 251 294 0.85 4 5 0.047 94 2.0 0.0 21 34 321 334 307 339 0.80 5 5 4.9e-12 9.6e-09 34.0 0.1 4 39 365 400 362 405 0.93
Sequence Information
- Coding Sequence
- ATGTCCGAGGTTATTAACCAACATGAAATTAATCAGAGCTACTGGTTCAAATGGAATGATTATCAAAATCATTTATCCGATGTAGTTAGACAACTTTTGGATGAGGATTGCATGGTGGATGTTACATTAGCAGCTGCAGGAGAACGAATTCATGCTCATCGAATAGTCCTCTGTGCTTGCAGCACTTTATTTCGAGAGATATTAAGTCAAGTAAATGAAGATCATCCAACAATAATATTGAGCGACATATCTGCTCAAGACATCAAATCTATTGTAGAATTTACTTATCATGGCGAAGTAAGGGTCCCAGTTGAGAATATCAGTAGTTTGTTAGATGCTGCACgttctttaaaaatatgtgGCCTTATTGAGATTGATGGACTTGACGAAGGTGATTTAGTAACAAACACAAAAGATTTCAATGATAATAGCGAAGAATCAACAACTATAATCAACGAGGAGACAGAAGAAAATGTTATCAATGCGTTGCAACATAGTTACGAAGAATTGGAGGATCAACAAAAGGAACAGATTACTGAGAATATCACTTTgcataaaaagaagaaacgcaGACGCGATGCGACGAAAAGAGATTATAGCGATGATATGTTAGAATCTGCGATCAATGATTTAAAATCAGGTCAAACATTGATAGAAGCTTCTACTAAGCACAATATACCCCGTTCAACGTTATACATGCGTGCCAAAGCATTAGGTATACATTTAAATGCATCAAGAAATGAATATCCAGCTGAATGTATGAAAGCTGCTATAAATGCAGTAATTGGTGGATCAAGTTTACAGCATGCATCAGAAATGTTTAGTATCCCAAAAACTGTATTGTGGAGAAGGATTCAGAAAGAAGGCTATCAAATATTACGTTCTGAAATGAAAAGGTCTTATGGTTCTGACAAACGAGAAGCGGCAGTGAAAGCATTAGAAAGGGGGGAGAATCTAACAAAAGTCGCGCTTGAATTCAAAATTCCAAAGACTACTCTATTCAGAGATAAAGCTCGATTGGTGGACGAGGGGAAATTACCACTATCGTTTTGGAAAAAACGTAAAACAGAGAATGAGGAATTAAAAAAGTCTCGTTTGGAAGAAGCTGTCGCCGCGTGTAAGGGAGGGAAAATGTCACAAGCTGCGGCATCCATGACTTATCATATTCCTAAAACAACTATATGGAGGCGTCTTCAACAAGATGGTAAAAAATCGGAACGATTATTAAATTCAAGAAAGCAAAGAGTAATAGATCCTAAACATAATTCAGAAACTAAAGTGCAGGAAGGTTCTGATTTTACATATTGTGAGgTTTCATCAGAGATTCCTATAACTTACATAGATGAAAATAGTATACCTGAGGATTCTGTGATAATATTAACAGCAGAAGATATGGACGAACTTAATTTAGAAGAAGGACgacaaattattgttaattccgaatCAGTACAAGAATATGTTCCTTGTGCTACAagtattgaagaaaattcaaattattcgcAGACTGAGAGTTAG
- Protein Sequence
- MSEVINQHEINQSYWFKWNDYQNHLSDVVRQLLDEDCMVDVTLAAAGERIHAHRIVLCACSTLFREILSQVNEDHPTIILSDISAQDIKSIVEFTYHGEVRVPVENISSLLDAARSLKICGLIEIDGLDEGDLVTNTKDFNDNSEESTTIINEETEENVINALQHSYEELEDQQKEQITENITLHKKKKRRRDATKRDYSDDMLESAINDLKSGQTLIEASTKHNIPRSTLYMRAKALGIHLNASRNEYPAECMKAAINAVIGGSSLQHASEMFSIPKTVLWRRIQKEGYQILRSEMKRSYGSDKREAAVKALERGENLTKVALEFKIPKTTLFRDKARLVDEGKLPLSFWKKRKTENEELKKSRLEEAVAACKGGKMSQAAASMTYHIPKTTIWRRLQQDGKKSERLLNSRKQRVIDPKHNSETKVQEGSDFTYCEVSSEIPITYIDENSIPEDSVIILTAEDMDELNLEEGRQIIVNSESVQEYVPCATSIEENSNYSQTES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00118108;
- 90% Identity
- iTF_00963105;
- 80% Identity
- iTF_01122351; iTF_01123161; iTF_01122555;