Bdah002268.1
Basic Information
- Insect
- Bombus dahlbomii
- Gene Symbol
- lola_1
- Assembly
- GCA_037178635.1
- Location
- CM074102.1:7081785-7084033[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 0.031 87 3.3 0.6 30 45 180 196 178 196 0.91 2 5 4.4e-07 0.0012 18.8 0.0 2 38 200 236 199 242 0.84 3 5 1.2e-11 3.4e-08 33.4 0.0 5 39 253 286 250 293 0.85 4 5 0.075 2.1e+02 2.0 0.0 21 34 320 333 306 338 0.80 5 5 7.1e-12 2e-08 34.1 0.1 4 39 364 399 361 405 0.92
Sequence Information
- Coding Sequence
- ATGTCCGAAATTACTAACCAACATGAGATTAATCAGAGTTATTGGTTTAAATGGAATGATTATCAAAACCATCTCTCCGATGTAGTTAGACAACTTTTAGAGGAGGACTGTATGGTAGACGTTACCCTGGCTGCGGGCGGGGAACGTATTCATGCTCATCGCATAGTTCTCTGCGCTTGTAGCACTTTATTTCGAgaaatattgAGTCAAGTAAATGAAGATCATCcaacaataatattaagcGATATATCTGCTCAAgatataaaatctattatagAATTTACTTACCATGGAGAAGTGAGAGTACCAGTTGAAAATATTAGTACCTTATTAGATGCGGCACGTTCACTAAAAATCTGTGGCCTTATTGAAATTGATGGACTTGAAGAAACTGATTCAGTTGTAAACAATAAGgattttaatgataataatgaagAGCCAATGACTATAATTAGCGAGACtgaagaaaatgttattaatgcGTTGCAACATAGTTATGAAGATTTGGAAGATCGACAAAAAGATGAGGTCGTCGAAAATTCcactttgaataaaaaaaggaaacgcaGACGTGATACAACAAAAAGAGATTATAGCGAAGATATGTTGGTAGCAGCAATTAATGATTTAAAAGCAGGGCAGACATTAATAGAAGCTTCTACTAAACATAATATACCACGTTCAACTTTGTACATGCGTGCTAAAGCATTAGGTATACATTTAAATGCATCAAGAAACGAATATCCGGCAGAGTGTATGAAAGCTGCTATAAATGCGGTAATTGGTGGATCAAGCCTACAACATGCATCAGAACTTTTTAGTATACCGAAGACTGTATTATGGAGGAGGATTCAGAAAGAAGGATATCAAATACTACGTTCGGAAATGAAAAGGTCTTATGGATCAGATAAACGGGAAGCTGCAGTTAAGGCTTTAGAAAGAGGAGAGAATTTAACAAAAGTAGCACTTGaattcaaaATTCCGAAAACTACGTTATTTAGAGATAAGGCGCGATTGGTAGATGAAGGAAAATTGCCATTATCATTTTGGAAGAAACGTAAGACGGAAAatgaagaattgaaaaaatctCGTTTGGAAGAAGCTGTTGCTGCATGTAAAGGAGGGAAAATGTCGCAAGCAGCAGCATCAATGACTTACCATATTCCAAAAACAACGATATGGAGACGTCTTCAACAAGATGGTAAAAAGTCAGAGCGCTCATTAAGTTCAAGGAAACAAAGAATAGCGGATTCTAAACATAATACAGAAACAAAGGTACAAGAAGGATCTGATTTTACATATTGCGAGgTTTCATCAGAAATTCCTATAACTTATATAGATGAAAATAGTATACCTGAAGATTCTGTGATAATATTAACAGCAGAAGATATGGATGGACTTAATTTAGAAGAGGGACGACAAATTATTGTTAACTCAGAATCGGGACAAGAATATGTTCCTTGTGCTATAAGcatcgaagaaaattcaaacTATTCACAAACTGAAAGTTAG
- Protein Sequence
- MSEITNQHEINQSYWFKWNDYQNHLSDVVRQLLEEDCMVDVTLAAGGERIHAHRIVLCACSTLFREILSQVNEDHPTIILSDISAQDIKSIIEFTYHGEVRVPVENISTLLDAARSLKICGLIEIDGLEETDSVVNNKDFNDNNEEPMTIISETEENVINALQHSYEDLEDRQKDEVVENSTLNKKRKRRRDTTKRDYSEDMLVAAINDLKAGQTLIEASTKHNIPRSTLYMRAKALGIHLNASRNEYPAECMKAAINAVIGGSSLQHASELFSIPKTVLWRRIQKEGYQILRSEMKRSYGSDKREAAVKALERGENLTKVALEFKIPKTTLFRDKARLVDEGKLPLSFWKKRKTENEELKKSRLEEAVAACKGGKMSQAAASMTYHIPKTTIWRRLQQDGKKSERSLSSRKQRIADSKHNTETKVQEGSDFTYCEVSSEIPITYIDENSIPEDSVIILTAEDMDGLNLEEGRQIIVNSESGQEYVPCAISIEENSNYSQTES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00118108;
- 90% Identity
- iTF_00963105;
- 80% Identity
- iTF_00218524;