Basic Information

Insect: Bombus vosnesenskii
Gene Symbol: lola
Assembly: GCA_011952255.1
Location: NW:2619578-2622067[-]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 6 0.41 6.2e+02 -0.5 0.4 30 45 180 196 178 196 0.80

2 6 1.1e-07 0.00017 20.5 0.0 2 38 200 236 199 242 0.86

3 6 1.1e-11 1.6e-08 33.4 0.0 5 39 253 286 250 293 0.85

4 6 0.066 1e+02 2.0 0.0 21 34 320 333 306 338 0.80

5 6 8.1e-12 1.2e-08 33.8 0.1 4 39 364 399 361 403 0.94

6 6 0.86 1.3e+03 -1.6 0.0 29 42 404 417 404 419 0.82

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	6	0.41	6.2e+02	-0.5	0.4	30	45	180	196	178	196	0.80
2	6	1.1e-07	0.00017	20.5	0.0	2	38	200	236	199	242	0.86
3	6	1.1e-11	1.6e-08	33.4	0.0	5	39	253	286	250	293	0.85
4	6	0.066	1e+02	2.0	0.0	21	34	320	333	306	338	0.80
5	6	8.1e-12	1.2e-08	33.8	0.1	4	39	364	399	361	403	0.94
6	6	0.86	1.3e+03	-1.6	0.0	29	42	404	417	404	419	0.82

Sequence Information

Coding Sequence: ATGTCCGAAATTACTAACCAACATGAGATCAATCAGAGTTATTGGTTTAAATGGAATGATTATCAAAACCATCTCTCCGATGTAGTTAGACAACTTTTAGAGGAGGACTGTATGGTAGACGTTACCCTGGCTGCGGGCGGGGAACGTATTCATGCTCATCGCATAGTTCTCTGCGCTTGTAGCACTTTATTTCGAgaaatattGAGTCAAGTAAATGAAGATCATCCAACAATAATATTAAGCGATATTTCTGCTCAAGatataaaatctattataGAATTTACTTACCATGGGGAAGTGAGAGTACCAGTTGAAAATATTAGTACCTTATTAGATGCAGCACGTTCACTAAAAATCTGTGGCCTTATTGAAATTGATGGACTTGAAGAAACTGACTCAATTGTAAGCAATAAGGattttaatgataataatgaaGAACCAATGACTGTAATTAGCGAGGCTgaagaaaatgttattaatgCGTTGCAACATAGTTATGAAGATTTGGAAGACCAACAAAAAGATGAGGTCGTCGAAAATTCCactttgaataaaaaaaagaaacgtaggCGCGATACAACAAAAAGAGATTATAGCGAAGATATGTTGGCAGCGGCAATTAATGATTTAAAAGCAGGGCAGACATTAATAGAAGCTTCTACTAAACATAATATACCACGTTCAACTTTGTACATGCGTGCTAAAGCATTAGGTATACATTTAAACGCATCAAGAAACGAATATCCGGCAGAGTGTATGAAAGCTGCTATAAATGCGGTAATTGGTGGATCAAGCCTACAGCATGCATCAGAACTTTTTAGTATACCAAAGACTGTATTATGGAGGAGGATTCAGAAAGAAGGATATCAAATACTACGTTCGGAAATGAAAAGGTCTTATGGATCAGATAAACGGGAAGCTGCAGTTAAGGCTTTAGAAAGAGGAGAGAATTTAACGAAAGTAGCACTTGAATtcaaaATTCCGAAAACTACTTTATTTAGAGATAAGGCGCGATTGGTAGATGAAGGAAAATTGCCATTATCATTTTGGAAGAAACGTAAGACGGAAAATGAAGAATTGAAAAAATCTCGTTTGGAAGAAGCTGTTGCTGCATGTAAAGGAGGGAAAATGTCGCAAGCAGCAGCATCAATGACTTACCATATTCCAAAAACAACGATATGGAGACGTCTCCAACAAGATGGTAAAAAGCCAGAGCGCTCGTTAAGTTCAAGGAAACAAAGAATAGCTGATTCTAAACATAATACAGAAACAAAGGTACAAGAAGGATCTGATTTTACATATTGCGAGgTTTCGTCAGAAATTCCTATAACTTATATAGATGAAAATAGTATACCTGAAGATTCTGTGATAATATTAACAGCAGAAGATATGGATGGACTTAATTTAGAAGAGGGACGACAAATTATTGTTAACTCAgaATCGGGACAAGAATATGTTCCTTGTGCTATAAGTATTGAAGAAAATTCAAACTATTCACAAACTGAAAGTTAG
Protein Sequence: MSEITNQHEINQSYWFKWNDYQNHLSDVVRQLLEEDCMVDVTLAAGGERIHAHRIVLCACSTLFREILSQVNEDHPTIILSDISAQDIKSIIEFTYHGEVRVPVENISTLLDAARSLKICGLIEIDGLEETDSIVSNKDFNDNNEEPMTVISEAEENVINALQHSYEDLEDQQKDEVVENSTLNKKKKRRRDTTKRDYSEDMLAAAINDLKAGQTLIEASTKHNIPRSTLYMRAKALGIHLNASRNEYPAECMKAAINAVIGGSSLQHASELFSIPKTVLWRRIQKEGYQILRSEMKRSYGSDKREAAVKALERGENLTKVALEFKIPKTTLFRDKARLVDEGKLPLSFWKKRKTENEELKKSRLEEAVAACKGGKMSQAAASMTYHIPKTTIWRRLQQDGKKPERSLSSRKQRIADSKHNTETKVQEGSDFTYCEVSSEIPITYIDENSIPEDSVIILTAEDMDGLNLEEGRQIIVNSESGQEYVPCAISIEENSNYSQTES

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00118108;
90% Identity: iTF_00963105;
80% Identity: iTF_00232694;