Alab029427.1
Basic Information
- Insect
- Apis laboriosa
- Gene Symbol
- lola
- Assembly
- GCA_014066325.1
- Location
- JACEOM010000037.1:1569679-1572265[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 0.29 1.5e+03 -0.0 0.1 25 44 174 195 172 196 0.66 2 5 1.1e-06 0.0058 17.3 0.0 3 38 201 236 199 242 0.78 3 5 2.8e-11 1.5e-07 32.0 0.0 5 39 253 286 250 293 0.85 4 5 0.066 3.5e+02 2.0 0.0 21 34 320 333 306 338 0.80 5 5 6.8e-12 3.6e-08 34.0 0.1 4 39 364 399 361 404 0.93
Sequence Information
- Coding Sequence
- ATGTCTGAAATTGCTAACCAACATGAAATCAATCAAAGTTATTGGTTTAAATGGAATGATTATCAAAATCATCTTTCTGATGTAGTTAGACAACTTTTAGAGGAAGATTGTATGGTGGATGTTACCCTGGCTGCTGCTGGGGAACGTATTCATGCACATCGTATAGTTCTTTGTGCTTGTAGTACTTTATTTCGAgaaATATTGAGTCAAGTAAATGAAGATCAcccaacaataatattaagtgATATATCTGCTCaagatataaaatctattatagaatttactTATCATGGAGAAGTACGAGTTCCAGTTgagaatattaatagtttattagATGCAGCTCGTTCATTGAAAATCTGTGGTCTTATTGAAATTGATGGGCTTGAAGAAACTGATTCTATtgtgaataataaagattttaatgataataatgaagaatCAATAACTGTAATTAGTGAGGCTgaagaaaaagttattaattcattacaacatgattatgaaaatttagagaatcaacaaaaatatgaaattactgaaaattccacattgaataaaaaaaagaaacgtagaCGCGATGCAACAAAAAGAGATTATAGTGATGATATGTTGGCATCagcaattaatgatttaaaggCAGGCCAAACATTAATAGAAGCTTCTACTAAACATAACATACCACGTTCAACTTTGTATATGCGTGCTAAAGCATTAGGTATTCATTTAAACGCATCAAGAAATGAATATCCGGCAGAATGTATGAAAGCTGCTATAAATGCGGTAATTGGTGGATCAAGCCTACAACATGCATCAGAGATGTTTAGTATACCAAAGACTGTATTGTGGAGGCGTATTCAAAAGGAAGGATATCAAATATTACGTTCAGAAATGAAAAGATCTTATGGATCGGATAAACGGGAAGCTGCAGTTAAGGCTttagaaagaggagaaaatttaacaaaagttGCACTtgaatttaaaattccaAAGACTACTTTATTTAGAGATAAGGCGCGATTGGTAGATGAAGGAAAACTTCCACTCTCATTTTGGAAGAAACGTAAGacagaaaatgaagaattaaaaaaatctcgttTGGAAGAAGCTGTTGCTGCTTGTAAAGGAGGAAAAATGTCGCAAGCAGCAGCATCAATGACTTATCATATTCCAAAAACAACAATCTGGAGACGTCTTCAACAAGATGGTAAAAAATCAGAACGCTCATTAGgttcaaaaaaacaaagaatatcagattctaaacataatattgaaacaaagGTAGAAGGATCTGATTTCACATATTGTGAGgtTTCATCAGAAATTCCTATAACTTATATAGATGAAAATAGTATACCTGAAGATTCTGTGATAATATTAACAGCAGAAGATATGGATGGACTTAATTTGGAAGAAGGACgacaaattattgttaattcagAATCAGGACAAGAATATGTTCCTTGTGCTATAagtattgaagaaaattcaaattattcacaaaCAGAAAGTTAG
- Protein Sequence
- MSEIANQHEINQSYWFKWNDYQNHLSDVVRQLLEEDCMVDVTLAAAGERIHAHRIVLCACSTLFREILSQVNEDHPTIILSDISAQDIKSIIEFTYHGEVRVPVENINSLLDAARSLKICGLIEIDGLEETDSIVNNKDFNDNNEESITVISEAEEKVINSLQHDYENLENQQKYEITENSTLNKKKKRRRDATKRDYSDDMLASAINDLKAGQTLIEASTKHNIPRSTLYMRAKALGIHLNASRNEYPAECMKAAINAVIGGSSLQHASEMFSIPKTVLWRRIQKEGYQILRSEMKRSYGSDKREAAVKALERGENLTKVALEFKIPKTTLFRDKARLVDEGKLPLSFWKKRKTENEELKKSRLEEAVAACKGGKMSQAAASMTYHIPKTTIWRRLQQDGKKSERSLGSKKQRISDSKHNIETKVEGSDFTYCEVSSEIPITYIDENSIPEDSVIILTAEDMDGLNLEEGRQIIVNSESGQEYVPCAISIEENSNYSQTES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00118108;
- 90% Identity
- iTF_00963105;
- 80% Identity
- iTF_00140684;