Nlat005771.1
Basic Information
- Insect
- Nomada lathburiana
- Gene Symbol
- lola
- Assembly
- GCA_963667235.1
- Location
- OY763900.1:19236894-19239111[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.3e-06 0.0018 17.9 0.0 5 38 202 235 198 241 0.81 2 4 3.8e-11 5.2e-08 32.5 0.0 5 39 252 285 249 292 0.83 3 4 0.02 28 4.5 0.0 7 34 306 332 302 338 0.83 4 4 5.1e-13 7.1e-10 38.4 0.0 4 39 363 398 347 404 0.94
Sequence Information
- Coding Sequence
- ATGTCCGAGATTGATAACCAACATGAGATTAACCAGAGCTATTGGTTTAAATGGAACGATTATCAAAATCATTTGTCCGATGTGGTTAGACAACTTCTGGAAGAGGATTGTATGGTGGACGTCACCCTGGCTGCTGCCGGGGAACGTATTCATGCTCATCGAATAGTTCTTTGTGCTTGTAGCACTTTATTTCgaGAAATATTGAGTCAAGTAAATGAAGATCATCCGACAATAATATTAAGCGACATATCTGCTCAAGATATTAAATCTATTATCGAATTTACTTACCACGGGGAAGTACGAGTTCCAGTCAACAATATTAGCAGTTTATTAGATGCAGCACGTTCCTTAAAAATATGTGGCCTGCTCGAGATCGATGGACTAGACGAGAGTGACTCTGTTGAGAACACTAAAGATTTTAACGATAACAATGAAGAGCCGATGTCTGTAATCAGTGAGACTGACGAAAGTGTTATTAACGAACTGCAACATGACTACGAGGATTTAGATGAACAAAAACAGGACATTATTGAGGATTCCACTGTaaatagaaagaagaaacgtaGGCGCGATACAATGAAACGAGATTACAGCGACAATATGTTAGCATCTGCGATCAATGATTTAAAGTCTGGTCAAACGTTAATAGAAGCTTCTACTAAACATAATATACCACGTTCAACTTTATACATGCGTGCTAAAGCGCTAGGTATACACTTGAACGCATCTAGAAACGAATATCCTGCAGAATGTATGAAAGCAGCTATAAACGCAGTAATAGGTGGATCAAGTTTGCAGCACGCGTCAGAAATGTTTAGTATACCTAAGACTGTATTATGGAGGAGGATTCAGAAGGAAGGGTATCACATGCTGCGTTCAGAAATGAAACGATCTTACGGTACTGATAAACGGGAAGCAGCGGTTAAAGCTTTACAAAGGGGAGAGAATTTGACTAAAGTAGCGCTTGAATTTAAAatTCCAAAGACTACTTTATTTAGAGACAAAGCCCGGCTGGTAGACGAAGGTAAATTACCTTTATCATTTTGGAAGAAACGCAAGGCGGAAAACGAACAATTAAAGAAGTCACGCTTGGAAGAAGCTGTTGCTGCTTGTAAAGGTGGAAAAATGTCGCAAGCAGCAGCATCGATGACTTATGATATTCCGAAGACGACGATATGGAGACGTCTTCAACAGGATGGTAAAAAATCAGAGCGCTCATTAAGCTCGAGGAAGCCAAGAATAACAGACTCAAAACATAATGCAGAAACCAAAGTACAAGGAGGATCTAATTTCACGTATTGCGAGGTTTCATCCGAAATTCCTATAACTTACATAGACGAAAATAGTATACCTGAAGATTCTGTGATAATATTAACGGCTGAAGATATGGACGGACTTAATTTAGAAGAAGGGCGgcaaattattgttaattcaGAATCGGGACAGGAATACGTTCCTTGTGCTATTAGTATCCAAGAAAACTCCAATTATTCACAGACAGAAAGTTAG
- Protein Sequence
- MSEIDNQHEINQSYWFKWNDYQNHLSDVVRQLLEEDCMVDVTLAAAGERIHAHRIVLCACSTLFREILSQVNEDHPTIILSDISAQDIKSIIEFTYHGEVRVPVNNISSLLDAARSLKICGLLEIDGLDESDSVENTKDFNDNNEEPMSVISETDESVINELQHDYEDLDEQKQDIIEDSTVNRKKKRRRDTMKRDYSDNMLASAINDLKSGQTLIEASTKHNIPRSTLYMRAKALGIHLNASRNEYPAECMKAAINAVIGGSSLQHASEMFSIPKTVLWRRIQKEGYHMLRSEMKRSYGTDKREAAVKALQRGENLTKVALEFKIPKTTLFRDKARLVDEGKLPLSFWKKRKAENEQLKKSRLEEAVAACKGGKMSQAAASMTYDIPKTTIWRRLQQDGKKSERSLSSRKPRITDSKHNAETKVQGGSNFTYCEVSSEIPITYIDENSIPEDSVIILTAEDMDGLNLEEGRQIIVNSESGQEYVPCAISIQENSNYSQTES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00118108;
- 90% Identity
- iTF_00963105;
- 80% Identity
- iTF_01069080;