Basic Information

Insect: Bombus pyrosoma
Gene Symbol: lola
Assembly: GCA_014825855.1
Location: CM026131.1:12953673-12955887[-]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 2.9e-07 0.00062 19.5 0.0 2 38 200 236 199 242 0.85

2 4 1.4e-11 3e-08 33.4 0.0 5 39 253 286 250 293 0.85

3 4 0.085 1.9e+02 2.0 0.0 21 34 320 333 306 338 0.80

4 4 8e-12 1.7e-08 34.1 0.1 4 39 364 399 361 405 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	2.9e-07	0.00062	19.5	0.0	2	38	200	236	199	242	0.85
2	4	1.4e-11	3e-08	33.4	0.0	5	39	253	286	250	293	0.85
3	4	0.085	1.9e+02	2.0	0.0	21	34	320	333	306	338	0.80
4	4	8e-12	1.7e-08	34.1	0.1	4	39	364	399	361	405	0.92

Sequence Information

Coding Sequence: ATGTCCGAAATTACTAACCAACATGAGATCAATCAGAGTTATTGGTTTAAATGGAATGATTATCAAAACCATCTCTCCGATGTAGTTAGACAACTTTTAGAGGAGGACTGTATGGTAGACGTTACCCTGGCTGCGGGCGGGGAACGTATTCATGCTCATCGTATAGTTCTCTGCGCTTGTAGCACTTTATTTCGAGAAATATTGAGTCAAGTAAATGAAGATCATCCAACAATAATATTAAGCGATATATCTGCTCAAGATATAAAATCTATTATAGAATTTACTTACCATGGAGAAGTGAGAGTACCAGTTGAAAATATTAGTACCTTATTAGATGCGGCACGTTCACTAAAAATCTGTGGCCTTATTGAAATTGATGGACTTGAAGAAACTGACTCAGTTGTGAGCAATAAGGATTTTAATGATAATAATGAAGAGCCAATGACTGTAATTAGCGAGGCTGAAGAAAATGTTATTAATGCGTTGCAACATAGTTATGAAGATTTGGAAGATCAACAAAAAGATGAGGTTGTTGAAAATTCCACTTCGAATAAAAAAAAGAAACGTAGGCGCGATACAACAAAAAGAGATTATAGCGAAGATATGTTGACGGCGGCAATTAATGATTTAAAAGCAGGGCAGACATTAATAGAAGCTTCTACTAAACATAATATACCACGTTCAACTTTGTACATGCGTGCTAAAGCATTAGGTATACATTTAAACGCATCAAGAAACGAATATCCGGCAGAGTGTATGAAAGCTGCTATAAATGCGGTAATTGGTGGATCAAGCCTACAGCATGCATCAGAACTTTTTAGTATACCAAAGACTGTATTATGGAGGAGGATTCAGAAAGAAGGATATCAAATACTACGTTCGGAAATGAAGAGGTCTTATGGATCAGATAAACGGGAAGCTGCAGTTAAGGCTTTAGAAAGAGGAGAGAATTTAACGAAAGTAGCACTTGAATTCAAAATTCCAAAAACTACTTTATTTAGAGATAAAGCGCGATTGGTAGATGAAGGAAAATTGCCATTATCATTTTGGAAGAAACGTAAGACGGAAAATGAAGAATTGAAAAAATCTCGTTTGGAAGAAGCTGTTGCTGCATGTAAAGGAGGGAAAATGTCGCAAGCAGCAGCATCAATGACTTACCATATTCCAAAAACAACGATATGGAGACGTCTCCAACAAGATGGTAAAAAGTCAGAGCGCTCGTTAAGTTCAAGGAAACAAAGAATAGCGGATTCTAAACATAATACAGAAACAAAGGTACAAGAAGGATCTGATTTTACATATTGCGAGGTTTCGTCAGAAATTCCTATAACTTATATAGATGAAAATAGTATACCTGAAGATTCTGTGATAATATTAACAGCAGAAGATATGGATGGACTTAATTTAGAAGAGGGACGACAAATTATTGTTAACTCAGAATCGGGACAAGAATATGTTCCTTGTGCTATAAGCATCGAAGAAAATTCAAACTATTCACAAACTGAAAGTTAG
Protein Sequence: MSEITNQHEINQSYWFKWNDYQNHLSDVVRQLLEEDCMVDVTLAAGGERIHAHRIVLCACSTLFREILSQVNEDHPTIILSDISAQDIKSIIEFTYHGEVRVPVENISTLLDAARSLKICGLIEIDGLEETDSVVSNKDFNDNNEEPMTVISEAEENVINALQHSYEDLEDQQKDEVVENSTSNKKKKRRRDTTKRDYSEDMLTAAINDLKAGQTLIEASTKHNIPRSTLYMRAKALGIHLNASRNEYPAECMKAAINAVIGGSSLQHASELFSIPKTVLWRRIQKEGYQILRSEMKRSYGSDKREAAVKALERGENLTKVALEFKIPKTTLFRDKARLVDEGKLPLSFWKKRKTENEELKKSRLEEAVAACKGGKMSQAAASMTYHIPKTTIWRRLQQDGKKSERSLSSRKQRIADSKHNTETKVQEGSDFTYCEVSSEIPITYIDENSIPEDSVIILTAEDMDGLNLEEGRQIIVNSESGQEYVPCAISIEENSNYSQTES

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00118108;
90% Identity: iTF_00963105;
80% Identity: iTF_00226694;