Ngoo007284.1
Basic Information
- Insect
- Nomada goodeniana
- Gene Symbol
- lola
- Assembly
- GCA_963969485.1
- Location
- OZ018302.1:26016920-26019136[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 5.9e-07 0.0011 18.5 0.0 5 38 202 235 198 241 0.82 2 5 5.5e-11 1e-07 31.4 0.0 5 39 252 285 250 292 0.84 3 5 0.014 26 4.5 0.0 7 34 306 332 302 338 0.83 4 5 3.7e-13 6.9e-10 38.4 0.0 4 39 363 398 360 404 0.92 5 5 2.5 4.6e+03 -2.7 0.0 31 43 405 417 403 418 0.81
Sequence Information
- Coding Sequence
- ATGTCCGACATTGATAACCAACATGAGATTAACCAGAGCTATTGGTTTAAATGGAACGACTATCAAAATCATTTGTCCGATGTAGTTAGACAACTTCTGGAAGAGGATTGTATGGTGGACGTTACCCTGGCTGCTGCCGGGGAACGTATTCATGCTCATCGAATAGTTCTTTGTGCTTGTAGCACTTTATTTCgagaAATATTGAGTCAAGTAAATGAAGATCATCCGACAATAATATTAAGCGACATATCTGCTCAAGATATTAAATCTATTATAGAATTTACTTACCACGGGGAAGTACGAGTTCCAGTTAACAATATTAGCAGTTTATTAGATGCAGCACGTTCCTTAAAAATTTGTGGCCTGCTCGAGATCGATGGACTAGACGAGAGTGATTCTGTTGAGGACACTAAAGATTTTAACGATAACAATGAAGAGCCAATGTCTGTAATCAGTGAGACTGACGAAAGTGTTATTAACGAACTGCAACATGACTACGAGGATTTAGATGAACAAAAACAGGAGATTATTGAGGATTCCACTGTaaatagaaagaagaaacgtagGCGCGATACAATGAAACGAGATTACAGCGACAATATGTTAGCATCTGCAATCCACGATTTAAAGTCTGGTCAAACATTAATAGAAGCTTCTACTAAACATAATATACCACGTTCAACTTTATACATGCGTGCTAAAGCATTAGGTATACACTTGAACGCATCTAGAAACGAATACCCTGTAGAATGTATGAAAGCAGCTATAAACGCAGTAATAGATGGATCAAGTTTGCAGCACGCGTCAGAAATGTTTAGTATACCTAAGACTGTATTATGGAGGAGGATTCAGAAGGAAGGGTATCAAATGTTGCGTTCAGAAATGAAACGATCTTATGGTTCTGATAAACGGGAAGCAGCGGTTAAAGCTTTACAAAGGGGAGAGAATTTGACTAAAGTAGCGCTTGAGTTTAAAattCCAAAGACTACTTTATTTAGAGATAAAGCCCGACTGGTAGACGAAGGTAAATTACCTTTATCATTTTGGAAGAAACGCAAGGCGGAAAACGAACAATTAAAGAAGTCACGCTTGGAAGAAGCTGTTGCTGCTTGTAAAGGTGGAAAAATGTCGCAAGCAGCAGCATCGATGACGTATGATATTCCGAAGACGACGATATGGAGACGTCTTCAACAGGATGGTAAAAAATCGGAGCGCTCATTAAACTCAAGGAAGCAAAGAATAACAGACTCCAAACATGATGCAGGAACCAAAGTACAAGAAGGatctaatttcacgtattGCGAGGTTTCATCCGAAATTCCTATAACTTACATAGACGAAAATAGTATACCGGAAGAttctgtaataatattaacggcTGAAGATATGGACGGACTTAATTTAGAAGAAGGACGGCAAATCATTGTTAATTCAgaATCTGGGCAAGAATACGTTCCTTGTGCTATTAGTATCGAAGAAAACTCCAATTATTCACAGACAGAAAGTTAG
- Protein Sequence
- MSDIDNQHEINQSYWFKWNDYQNHLSDVVRQLLEEDCMVDVTLAAAGERIHAHRIVLCACSTLFREILSQVNEDHPTIILSDISAQDIKSIIEFTYHGEVRVPVNNISSLLDAARSLKICGLLEIDGLDESDSVEDTKDFNDNNEEPMSVISETDESVINELQHDYEDLDEQKQEIIEDSTVNRKKKRRRDTMKRDYSDNMLASAIHDLKSGQTLIEASTKHNIPRSTLYMRAKALGIHLNASRNEYPVECMKAAINAVIDGSSLQHASEMFSIPKTVLWRRIQKEGYQMLRSEMKRSYGSDKREAAVKALQRGENLTKVALEFKIPKTTLFRDKARLVDEGKLPLSFWKKRKAENEQLKKSRLEEAVAACKGGKMSQAAASMTYDIPKTTIWRRLQQDGKKSERSLNSRKQRITDSKHDAGTKVQEGSNFTYCEVSSEIPITYIDENSIPEDSVIILTAEDMDGLNLEEGRQIIVNSESGQEYVPCAISIEENSNYSQTES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00118108;
- 90% Identity
- iTF_00963105;
- 80% Identity
- iTF_01067717;