Tdiv021121.1
Basic Information
- Insect
- Tetrapedia diversipes
- Gene Symbol
- bab1
- Assembly
- GCA_033822845.1
- Location
- JAOPTO010002283.1:121455-123662[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 3.2e-07 0.00086 19.7 0.0 2 38 200 236 199 242 0.84 2 4 4.4e-11 1.2e-07 32.0 0.0 5 39 253 286 250 293 0.85 3 4 0.1 2.8e+02 2.0 0.0 21 34 320 333 306 338 0.80 4 4 3e-12 8e-09 35.8 0.0 3 39 363 399 348 405 0.94
Sequence Information
- Coding Sequence
- ATGTCCGAAATTACTAACCAACATGAGATTAATCAGAGCTACTGGTTTAAATGGAATGATTATCAAAGCCATTTATCTGATGTAGTTAGACAGCTCTTAGAGGAGGATTGCATGGTAGATGTGACGTTGGCTGCTGCCGGAGAACGTATTCATGCTCATCGGATAGTTCTTTGTGCTTGTAGCACTTTATTTCGAgaaatattGAGTCAAGTAAATGAAGATCATCcaacaataatattaagtgATATATCAGCTCAAGACATAAAATCTATTATAGAATTTACTTATCATGGTGAAGTACGAGTTCCAGTTGAAAATATCAGTAGCTTATTAGATGCAGCacgttcattaaaaatttgtggtctTATAGAGATTGATGAAGTTGATGAAAATGATTCTATTGTAAGCAATAGAGACTTTAACGATAATAATGAAGAGCCAATAACAGTAATTAATGAGGCTGAAGAAAATGTTATGAATGCATTACAACATGATTATGAGGATTTAGAGGATCAACAAAAGCAAGAGATCATTGAAGATTCtgttttaagtaaaaaaaagaaacgcagaCGAGATACAATAAAAAGGGATTACAGTGATGATATGTTAGCATCTGCAATTAATGATTTGAAATCTGGTCAAACATTAATAGAAGCTTCTACTAAACATAATATACCACGTTCAACCTTGTACATGCGCGCTAAAGCATTAGGTATACATTTAAATGCATCAAGAAATGAATATCCTGCAGAATGTATGAAAGCTGCTATAAATGCAGTAATTGGTGGATCAAGTTTGCAGCATGCATCAGAAATGTTTAGTATACCTAAGACTGTATTATGGAGGAGAATTCAGAAAGAAGGATATCAAATATTACGTTCTGAAATGAAAAGATCTTATGGTTCGGACAAACGAGAAGCTGCTGTTAAAGCTTTAGAAAGAGGAGAAAACTTGACAAAAGTGGCACttgaatttaaaATTCCGAAAACAACTTTATTTAGAGACAAAGCTCGATTGGTGGATGAGGGAAAGCTACCACTATCATTTTGGAAGAAACGTAAGACggaaaatgaagaattaaaaaaaactcGTTTGGAAGAAGCTGTTGCTGCCTGTAAGGGAGGAAAAATGTCGCAAGCAGCGGCATCGATGACTTATCATATTCCTAAAACAACGATATGGAGACGTCTTCAGCAAGATGGTAAAAAATCAGAGCGATCATTAAATTCGAGAAAACAAAGAATATCGGATTCAAAACATAATACAGAGACGAAAGTACAAGAAGGATCTGAATTCACATACTGTGAGGTTTCATCAGAAATACCTATAACTTATATAGATGAAAATAGCATACCTGAAGATTCTGTGATAATATTAACAGCAGAAGATATGGATGGACTTCATTTAGAAGAAAGTCGACAAATCATTGTTAATTCaGAATCAGGCCAAGAGTATGTTCCTTGTGCTATAAGTATtgaagaaaattcaaattattcacAAACCGAAAGTTAG
- Protein Sequence
- MSEITNQHEINQSYWFKWNDYQSHLSDVVRQLLEEDCMVDVTLAAAGERIHAHRIVLCACSTLFREILSQVNEDHPTIILSDISAQDIKSIIEFTYHGEVRVPVENISSLLDAARSLKICGLIEIDEVDENDSIVSNRDFNDNNEEPITVINEAEENVMNALQHDYEDLEDQQKQEIIEDSVLSKKKKRRRDTIKRDYSDDMLASAINDLKSGQTLIEASTKHNIPRSTLYMRAKALGIHLNASRNEYPAECMKAAINAVIGGSSLQHASEMFSIPKTVLWRRIQKEGYQILRSEMKRSYGSDKREAAVKALERGENLTKVALEFKIPKTTLFRDKARLVDEGKLPLSFWKKRKTENEELKKTRLEEAVAACKGGKMSQAAASMTYHIPKTTIWRRLQQDGKKSERSLNSRKQRISDSKHNTETKVQEGSEFTYCEVSSEIPITYIDENSIPEDSVIILTAEDMDGLHLEESRQIIVNSESGQEYVPCAISIEENSNYSQTES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00118108;
- 90% Identity
- iTF_00963105;
- 80% Identity
- iTF_01424475;