Nfer004832.1
Basic Information
- Insect
- Nomada ferruginata
- Gene Symbol
- lola
- Assembly
- GCA_963583965.1
- Location
- OY757215.1:20231319-20233481[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 6.7e-07 0.00072 19.7 0.0 2 38 199 235 198 241 0.84 2 5 9.2e-11 9.9e-08 32.0 0.0 5 39 252 285 249 292 0.85 3 5 0.22 2.3e+02 2.0 0.0 21 34 319 332 305 337 0.80 4 5 2e-11 2.2e-08 34.1 0.1 4 39 363 398 360 404 0.92 5 5 2.2 2.4e+03 -1.2 0.0 31 44 405 418 403 419 0.83
Sequence Information
- Coding Sequence
- ATGTCCGAGATTGATAACCAACATGAGATTAACCAGAGCTATTGGTTTAAATGGAACGATTATCAAAATCATTTGTCCGATGTAGTTAGACAACTTCTGGAAGAGGATTGTATGGTGGACGTTACCCTGGCTGCTGCCGGGGAACGTATTCATGCTCATCGAATAGTTCTTTGTGCTTGTAGCACTTTATTTCGTGAAATATTGAGTCAAGTAAATGAAGATCATCCGACAATAATATTAAGCGACATATCTGCCCAAGATATTAAATCTATTAtagaatttacgtaccacggGGAAGTACGAGTTCCAGTCGACAATATTAGCAGTTTATTAGATGCAGCGCGTTCCTTAAAAATTTGCGGCCTGCTCGAGaTCGATGGACTGGACGAGAGTGACTCTGTGGAGAACGCTAAAGATTTTAACGATAACACTGAGGAGCCGATGACTGTAATCAGTGAGACTGACGAAAGTGTTGTTAACGAACTGCAACACGGCTACGAGGATTTAGATGAACAGAAACAGGAGATTATCGAGGATTCCGCTGTAAATAAAAGGAAGAAACGTAGACGCGATACAACGAAACGAGATTACAGCGATGATATGTTAGCATCCGCGATCAATGATTTAAAGTCCGGTCAAACGTTAATAGAAGCTTCTACTAAACATAATATACCGCGTTCAACTTTATACATGCGTGCCAAAGCTTTAGGTATACACTTGAACGCATCTAGAAATGAATATCCTGCAGAATGTATGAAAGCTGCTATAAACGCGGTGATAGGTGGATCAAGTTTGCAGCACGCGTCAGAAATGTTTAGTATACCTAAGACTGTATTATGGAGGAGGATTCAGAAGGAAGGGTATCAAATATTGCGTTCAGAAATGAAACGATCTTACGGTTCTGATAAACGGGAAGCAGCGGTTAAAGCTTTAGAAAGGGGAGAGAATTTGACTAAAGTAGCGCTTGAATTTAAAATTCCAAAGACTACGTTATTTAGAGACAAAGCCCGACTGGTAGACGAAGGTAAATTACCTTTATCATTTTGGAAGAAACGCAAGACGGAAAACGAAGAATTAAAGAAATCACGCTTGGAAGAAGCTGTTGCTGCTTGTAAAGGTGGAAAAATGTCGCAAGCAGCAGCATCGATGACTTATCATATTCCGAAGACGACGATATGGAGACGTCTTCAACAGGATGGTAAAAAATCAGAGCGCTCGCTAAGCTCGAGGAAGCAAAGAATAACAGATTCCAAACATAATGCCGAAACGAAAGTACAAGAAGGATCTGATTTCACGTATTGCGAGGTTTCATCCGAAATTCCTATAACTTATATAGATGAAAATAGTATACCTGAAGATTCTGTGATAATATTAACGGCTGAAGATATGGACGGACTTAATTTAGAAGAAGGAcggcaaattattgttaattcAgaATCGGGACAAGAATACGTTCCTTGTGCTATCAGTATCGAAGAAAACTCCAATTATTCACAGACAGAAAGTTAG
- Protein Sequence
- MSEIDNQHEINQSYWFKWNDYQNHLSDVVRQLLEEDCMVDVTLAAAGERIHAHRIVLCACSTLFREILSQVNEDHPTIILSDISAQDIKSIIEFTYHGEVRVPVDNISSLLDAARSLKICGLLEIDGLDESDSVENAKDFNDNTEEPMTVISETDESVVNELQHGYEDLDEQKQEIIEDSAVNKRKKRRRDTTKRDYSDDMLASAINDLKSGQTLIEASTKHNIPRSTLYMRAKALGIHLNASRNEYPAECMKAAINAVIGGSSLQHASEMFSIPKTVLWRRIQKEGYQILRSEMKRSYGSDKREAAVKALERGENLTKVALEFKIPKTTLFRDKARLVDEGKLPLSFWKKRKTENEELKKSRLEEAVAACKGGKMSQAAASMTYHIPKTTIWRRLQQDGKKSERSLSSRKQRITDSKHNAETKVQEGSDFTYCEVSSEIPITYIDENSIPEDSVIILTAEDMDGLNLEEGRQIIVNSESGQEYVPCAISIEENSNYSQTES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00118108;
- 90% Identity
- iTF_00963105;
- 80% Identity
- iTF_01066366;