Basic Information

Insect: Colletes gigas
Gene Symbol: ttk
Assembly: GCA_013123115.1
Location: WUUM01000005.1:1525020-1527128[-]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 0.85 1.7e+03 -1.3 0.5 30 41 180 191 180 196 0.67

2 5 1.3e-07 0.00025 20.5 0.0 2 42 200 240 199 242 0.86

3 5 2.7e-11 5.4e-08 32.2 0.0 5 39 253 286 250 293 0.85

4 5 0.075 1.5e+02 2.0 0.0 21 34 320 333 306 338 0.80

5 5 1.9e-11 3.7e-08 32.8 0.1 4 39 364 399 361 404 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	0.85	1.7e+03	-1.3	0.5	30	41	180	191	180	196	0.67
2	5	1.3e-07	0.00025	20.5	0.0	2	42	200	240	199	242	0.86
3	5	2.7e-11	5.4e-08	32.2	0.0	5	39	253	286	250	293	0.85
4	5	0.075	1.5e+02	2.0	0.0	21	34	320	333	306	338	0.80
5	5	1.9e-11	3.7e-08	32.8	0.1	4	39	364	399	361	404	0.93

Sequence Information

Coding Sequence: ATGTCTGAAGTTGTTGGCCAACATGATATTAATCAAAGCTATTGTTTCAAATGGAATGATTATGAAAACCATTTATCTGATGTAGTTAGACAACTCTTGGAGGAAGATTGTATGGTGGATGTTATATTGGCTGCTGCCGGAGAACGTATTCATGCTCATCGTATAGTTCTCTGCGCTTGTAGCACTTTGTTTCGAgaGGTTTTAAGTCAAGTGAACGAGGATCATCCGACAATAATATTGAGTGATATCTCGGCGCAAGATATCAAATCcattatagaatttatttattatggcGAAGTACGAGTTCCAGTCGAGAATATTAGTAGTTTACTGGACGCTGCacgttctttaaaaatttgcggTCTTGTTGAGATCGATGGGCTAGACGAGAACGATTCGGTTGTGAGTGCAAAAGATTTCAACGATAATAACGAAGAGCCGATGACTGTAATTGGCGAGACAGAGGAAAATGTCATTAATGCATTGCAGCATGGCTATGAAGATTTAGAGGATCAACAGGAACAGAAACTTTCTGAGAATTCCTCtttgaataaaagaaagaaacgcaGGCGTGATACAACAAAACGAGATTATAGCGATGATATGTTAGCGTCGGCAATCGACGATTTAAAGTCAGGGCAAACGTTAATAGAAGCTTCGACTAAACACAATATACCACGTTCTACATTGTATATGCGTGCTAAATCATTAGGAATACATTTAAATGCATCTAGAAATGAATATCCAGCAGAGTGTATGAAAGCTGCTATAAATGCTGTACTAGGAGGTTCAAGTTTGCAACACGCGTCAGAAATGTTTAGTATACCAAAAACTGTATTATGGAGAAGAATTCAAAAAGAGGGTTACCACATACTGCGCTCGGAAATGAAACGGTCTTACGGTTCTGACAAACGGGAGGCTGCGGTCAAAGCTTTAGAAAGAGGAGAGAATTTAACGAAAGTTGCACTTGAATTCAaaattcCAAAGACCACTTTATTTAGGGATAAAGCTCGGTTAGTCGACGAGGGAAAACTGCCATTATCATTTTGGAAGAAACGCAAAACGGAAAATGAAGAGTTAAAAAAATCACGGTTGGAGGAGGCTGTCGCCGCTTGTAAAGGCGGGAAAATGTCGCAAGCGGCAGCATCGATGACTTACCGTATTCCTAAAACAACAATATGGAGACGCCTTCAACAAGACGGCAAAAAGTCAGAACGTTTAACGAATTCGAGAAAGCAACGAATAACGGATTCTAAACACAACATAGATGTTAAAGCCCAAGAAGGATCCGATTTCACGTATTGCGAGGTTTCGTCAGAAATTCCTATAACTTACATAGACGAAAATAGTATACCTGAAGATTCTGTGATAATATTAACGGCAGAAGATATGGATGGATTGAACTTGGAAGAAGGACGACAAATAATTGTTAACTCAGAATCAGTAGAAGAATATGTTCCTTGTACAATAAGcatcgaagaaaattcgaattattCGCAAACCGAAAGTTAG
Protein Sequence: MSEVVGQHDINQSYCFKWNDYENHLSDVVRQLLEEDCMVDVILAAAGERIHAHRIVLCACSTLFREVLSQVNEDHPTIILSDISAQDIKSIIEFIYYGEVRVPVENISSLLDAARSLKICGLVEIDGLDENDSVVSAKDFNDNNEEPMTVIGETEENVINALQHGYEDLEDQQEQKLSENSSLNKRKKRRRDTTKRDYSDDMLASAIDDLKSGQTLIEASTKHNIPRSTLYMRAKSLGIHLNASRNEYPAECMKAAINAVLGGSSLQHASEMFSIPKTVLWRRIQKEGYHILRSEMKRSYGSDKREAAVKALERGENLTKVALEFKIPKTTLFRDKARLVDEGKLPLSFWKKRKTENEELKKSRLEEAVAACKGGKMSQAAASMTYRIPKTTIWRRLQQDGKKSERLTNSRKQRITDSKHNIDVKAQEGSDFTYCEVSSEIPITYIDENSIPEDSVIILTAEDMDGLNLEEGRQIIVNSESVEEYVPCTISIEENSNYSQTES

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00118108;
90% Identity: iTF_00963105;
80% Identity: iTF_00361006;