Basic Information

Insect: Xylocopa violacea
Gene Symbol: lola_1
Assembly: GCA_963969225.1
Location: CAXAJV010000017.1:15669855-15672059[-]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 6 4.6 7.1e+03 -3.0 0.2 32 45 178 192 177 192 0.78

2 6 3.7e-07 0.00058 19.7 0.0 2 38 196 232 195 238 0.84

3 6 5.1e-11 8e-08 32.0 0.0 5 39 249 282 246 289 0.85

4 6 0.015 23 5.0 0.0 21 34 316 329 302 334 0.80

5 6 1.1e-11 1.8e-08 34.1 0.1 4 39 360 395 357 401 0.92

6 6 3.6 5.5e+03 -2.7 0.0 31 43 402 414 400 415 0.81

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	6	4.6	7.1e+03	-3.0	0.2	32	45	178	192	177	192	0.78
2	6	3.7e-07	0.00058	19.7	0.0	2	38	196	232	195	238	0.84
3	6	5.1e-11	8e-08	32.0	0.0	5	39	249	282	246	289	0.85
4	6	0.015	23	5.0	0.0	21	34	316	329	302	334	0.80
5	6	1.1e-11	1.8e-08	34.1	0.1	4	39	360	395	357	401	0.92
6	6	3.6	5.5e+03	-2.7	0.0	31	43	402	414	400	415	0.81

Sequence Information

Coding Sequence: ATGTCCGAGATTGCTAACCAACATGAGATTAATCAGAGCTACTGGTTTAAATGGAATGATTATGGGAGTCATTTATCTGATGTAGTTAGACAACTCCTGGAGGAGGATTGCATGGTGGACGTTACCCTGGCTGCAGCTGGGGAACGAATTCATGCTCATCGCATAGTTCTCTGCGCTTGTAGCACTTTGTTTCGAGAAATATTGAGTCAAGTAAACGAAGATCATCCGACAATAATATTAAGCGATATATCTGCTCAAGACATAAAGTCTATCATAGAGTTCACTTATCACGGGGAAGTGAGAGTTCCCGTCGAGAATATCAGTAGCTTATTAGATGCAGCGCGTTCATTAAAAATTTGCGGTCTCATAGAGATCGATGAAACTGATTCCGTTGAAAATAAAGACTTCAATGACAATAATGAAGAGCCAATGACTGTAATTAGCGAGGCTGAAGAAAATGTTATTAATGCATTGCAGCATGCTTACGAAGATTTAGAGGATAAGAAGAAAGAGGAGGTCACAGAGAACTGCACTCTGAGCAAGAAAAAGAAGCGCAGACGCGACACAGCCAAAAGGGATTATAGCGATGATATGCTAGCGTCGGCAATTAACGATTTAAAGTCTGGTCAAACATTAATAGAAGCTTCCACTAAACACAATATACCGCGTTCAACCTTGTATATGCGTGCTAAAGCATTAGGTATACATTTAAACGCATCtagaaatgaatatccagcagaATGTATGAAAGctgcaataaatgcagtgattgGTGGATCAAGTTTGCAGCATGCATCGGAAATGTTCAGTATACCCAAGACTGTATTGTGGAGGAGAATTCAGAAAGAAGGATATCAGATATTGCGTTCTGAAATGAAAAGATCTTATGGTTCAGACAAACGGGAAGCTGCAGTAAAGGCTTTAGAGAGAGGAGAGAATCTAACGAAAGTTGCGCTTGAATTTGAAATTCCCAAAACTACGTTATTTAGAGATAAGGCTCGATTAGTAGGTGAAGGGAAACTACCACTGTCGTTTTGGAAAAAACGAAAGACGGAAAATGAAGAATTGAAAAAGTCTCGCTTGGAAGAAGCTGTTGCTGCTTGCAAAGGAGGAAAAATGTCGCAAGCAGCGGCATCGATGACTTATCATATTCCAAAGACTACGATATGGAGGCGTCTTCAACAAGATGGCAAAAAATCAGAACGATCGTTAAATTCGAGGAAGCAAAGAATAACTGATTCTAAACATAATGTAGGAACAAAAACTGAAGGATCTGATTTCACATACTGCGAGGTTTCATCAGAAATACCTATAACTTACATAGATGAAAATAGTATACCTGAAGAGTCTATGATAATATTAACGGCGGAAGATATGGACGGATTTAATTTAGAAGAAGGACGACAAATTATTGTTAATTCAGAGTCAGGACAGGAGTACGTCCCTTGTGCTATAAGCATCGAAGAAAATTCAAATTATTCTCAGACGGAAAGTTAG
Protein Sequence: MSEIANQHEINQSYWFKWNDYGSHLSDVVRQLLEEDCMVDVTLAAAGERIHAHRIVLCACSTLFREILSQVNEDHPTIILSDISAQDIKSIIEFTYHGEVRVPVENISSLLDAARSLKICGLIEIDETDSVENKDFNDNNEEPMTVISEAEENVINALQHAYEDLEDKKKEEVTENCTLSKKKKRRRDTAKRDYSDDMLASAINDLKSGQTLIEASTKHNIPRSTLYMRAKALGIHLNASRNEYPAECMKAAINAVIGGSSLQHASEMFSIPKTVLWRRIQKEGYQILRSEMKRSYGSDKREAAVKALERGENLTKVALEFEIPKTTLFRDKARLVGEGKLPLSFWKKRKTENEELKKSRLEEAVAACKGGKMSQAAASMTYHIPKTTIWRRLQQDGKKSERSLNSRKQRITDSKHNVGTKTEGSDFTYCEVSSEIPITYIDENSIPEESMIILTAEDMDGFNLEEGRQIIVNSESGQEYVPCAISIEENSNYSQTES

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00118108;
90% Identity: iTF_00963105;
80% Identity: iTF_01539706;