Basic Information

Insect: Nomada ruficornis
Gene Symbol: lola
Assembly: GCA_951802695.1
Location: OX637848.1:18979856-18982061[-]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 5.2e-07 0.00073 19.7 0.0 2 38 199 235 198 241 0.84

2 5 7.2e-11 1e-07 32.0 0.0 5 39 252 285 249 292 0.85

3 5 0.17 2.4e+02 2.0 0.0 21 34 319 332 305 337 0.80

4 5 1.6e-11 2.2e-08 34.1 0.1 4 39 363 398 360 404 0.92

5 5 1.7 2.4e+03 -1.2 0.0 31 44 405 418 403 419 0.83

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	5.2e-07	0.00073	19.7	0.0	2	38	199	235	198	241	0.84
2	5	7.2e-11	1e-07	32.0	0.0	5	39	252	285	249	292	0.85
3	5	0.17	2.4e+02	2.0	0.0	21	34	319	332	305	337	0.80
4	5	1.6e-11	2.2e-08	34.1	0.1	4	39	363	398	360	404	0.92
5	5	1.7	2.4e+03	-1.2	0.0	31	44	405	418	403	419	0.83

Sequence Information

Coding Sequence: ATGTCCGAGATTGATAACCAACATGAGATTAACCAGAGCTATTGGTTTAAATGGAACGATTATCAAAATCATTTGTCCGATGTAGTTAGACAACTTCTGGAAGAGGATTGTATGGTGGACGTTACCCTGGCTGCTGCCGGGGAACGTATTCATGCTCATCGAATAGTTCTTTGTGCTTGTAGCACTTTATTTCGTGAAATATTGAGTCAAGTAAATGAAGATCATCCGACAATAATATTAAGCGACATATCTGCCCAAGATATTAAATCTATCATAGAATTTACTTACCACGGGGAAGTACGAGTTCCAGTCAACAATATTAGCAGTTTATTAGATGCAGCGCGTTCCTTAAAAATTTGCGGCCTGCTCGAGATCGATGGACTGGACGAGAGCGACTCTGTGGAGAACGCTAAAGATTTTAACGATAACAATGAGGAGCCGATGACTGTAATCAGTGAGACTGACGAAAGTGTTATTAACGAACTGCAACACGGCTACGAGGATTTAGATGAACAGAAACAGGAGATTATCGAGGATTCCGCTGTAAATAAAAGGAAGAAACGCAGGCGCGATACAACGAAACGAGATTACAGCGATGATATGTTAGCATCGGCGATCAATGATTTAAAGTCTGGTCAAACGTTAATAGAAGCTTCTACTAAACATAATATACCGCGTTCAACTTTATACATGCGTGCCAAAGCGTTAGGTATACACTTGAACGCATCTAGAAATGAATATCCTGCAGAATGTATGAAAGCTGCTATAAACGCGGTGATAGGTGGATCAAGTTTGCAGCACGCGTCAGAAATGTTTAGTATACCTAAGACTGTATTGTGGAGGAGGATTCAGAAGGAAGGGTATCAAATATTGCGTTCAGAAATGAAACGATCTTACGGTTCTGATAAACGGGAAGCAGCGGTTAAAGCTTTAGAAAGGGGAGAGAATTTGACTAAAGTAGCGCTTGAATTTAAAATTCCAAAGACTACGTTATTTAGAGACAAAGCCCGACTGGTAGACGAAGGTAAATTACCTTTATCATTTTGGAAGAAACGCAAGACGGAGAACGAAGAATTAAAGAAATCACGCTTGGAAGAAGCTGTTGCTGCTTGTAAAGGTGGGAAAATGTCGCAAGCAGCAGCATCAATGACTTATCATATTCCGAAGACGACGATATGGAGACGTCTTCAACAGGATGGTAAAAAATCAGAGCGCTCGCTAAGCTCGAGGAAGCAAAGAATAACAGATTCCAAACATAATGCAGAAACGAAAGTACAAGAAGGATCTGATTTCACGTATTGCGAGGTTTCATCCGAAATTCCTATAACTTACATAGATGAAAATAGTATACCTGAAGACTCTGTGATAATATTAACGGCTGAAGATATGGATGGACTTAATTTAGAAGAAGGACGGCAAATTATTGTTAACTCAgaATCGGGACAGGAATACGTTCCTTGCGCTATTAGTATCGAAGAAAACTCCAATTATTCACAGACAGAAAGTTAG
Protein Sequence: MSEIDNQHEINQSYWFKWNDYQNHLSDVVRQLLEEDCMVDVTLAAAGERIHAHRIVLCACSTLFREILSQVNEDHPTIILSDISAQDIKSIIEFTYHGEVRVPVNNISSLLDAARSLKICGLLEIDGLDESDSVENAKDFNDNNEEPMTVISETDESVINELQHGYEDLDEQKQEIIEDSAVNKRKKRRRDTTKRDYSDDMLASAINDLKSGQTLIEASTKHNIPRSTLYMRAKALGIHLNASRNEYPAECMKAAINAVIGGSSLQHASEMFSIPKTVLWRRIQKEGYQILRSEMKRSYGSDKREAAVKALERGENLTKVALEFKIPKTTLFRDKARLVDEGKLPLSFWKKRKTENEELKKSRLEEAVAACKGGKMSQAAASMTYHIPKTTIWRRLQQDGKKSERSLSSRKQRITDSKHNAETKVQEGSDFTYCEVSSEIPITYIDENSIPEDSVIILTAEDMDGLNLEEGRQIIVNSESGQEYVPCAISIEENSNYSQTES

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00118108;
90% Identity: iTF_00963105;
80% Identity: iTF_01070467;