Dbir002642.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Drosophila birchii
Gene Symbol
stc
Assembly
GCA_008042755.1
Location
VNKA01001553.1:166945-170492[+]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 14 2 1.9e+04 -4.1 1.6 15 19 366 370 365 370 0.81
2 14 0.046 4.4e+02 1.1 2.2 4 11 399 406 398 407 0.91
3 14 5.7e-07 0.0054 16.8 15.1 1 19 411 428 411 428 0.93
4 14 2.6e-05 0.25 11.5 9.0 1 18 464 481 464 482 0.95
5 14 2 1.9e+04 -6.2 3.9 7 13 486 492 486 493 0.74
6 14 3.4e-09 3.2e-05 23.9 13.6 1 19 522 540 522 540 0.98
7 14 3.3e-05 0.31 11.2 16.3 4 19 588 603 581 603 0.87
8 14 0.057 5.4e+02 0.8 11.6 1 11 643 653 643 665 0.79
9 14 4.6e-10 4.4e-06 26.7 15.5 1 18 670 687 670 688 0.97
10 14 1.6 1.6e+04 -3.8 0.9 6 10 717 721 717 722 0.81
11 14 2 1.9e+04 -9.0 11.6 10 18 735 744 724 745 0.71
12 14 2 1.9e+04 -4.3 1.5 9 13 751 755 750 756 0.79
13 14 1.5e-08 0.00014 21.8 11.0 1 16 781 796 781 803 0.87
14 14 5e-07 0.0048 17.0 13.1 1 19 813 832 813 832 0.96

Sequence Information

Coding Sequence
ATGGACGAGTATTGGCAGCAGCTGACTAACGGCGGCTTCATTCAACAGCACAACCTGGGTGGAGGATCATCGCCCACTGCCAGCGCCGGCACAATGCAGCATCCCCTGAGCAGCGCTAATAACACGAACTACAATatcggcggcggtggaggagccTTCGGCCTGAACCCGCCAGTGGCTTCTCTCGGGAATTCCAACAGCTTTGGCCATCTATATTCACAGCCCATGTTTCCATCGTACCAGAATGGTGATGGCGCCGCCGCCTTCAGCAACAACTATGATGATACCTTTTCAAATCTGTACACACCGTTCGGCAACAATCCCTTTGACTTCAGCTCTTCCAAGCTGCAGGCCTCAGCCCCCGAATTTGTGCCTAATGTGGCCAAGCTAAGTCTGAACGAGGTgccggcagcggcggcggcggctacgACGCCCAACGGAAACAGGAATATCACTGCCAGCCAAGAAACTGCCATTAGTGTGACGGGAGCCCCAAGAGCCCCACAACCTGGGGGAAGCGGTGtatcaggaggaggaggagagcctCACCACGTTCGTTTATCCGCCAACAATTACGAAAGAGATCGCGGCGACAGAGACTCCCGACCGGGAAGCACCCGGCAACAGCGTCGCTCTGACTACCGCGATGACCGCGAGGATCGATACGAGCGAAACGAACGCAAGAAGccccagaagcagcagcgctACGACAATCATAGAAGCAACAAACGAAGGGATGACTGGAATCGCAACAGGGACCGCATCAACGGTTTTCCCCGGGCCGCCGACGAGCTGGACACAAGCAACGAGAGTGCTCAGCCCTCGCCCGAAAAGCAGCAAACgacgcagcaacagcagcaacaaatatCTCCACGAAGATCTATGCCGCCACCACCGGCGGCGGATAATGAAAAGCTATCGCAGCGGGAGAAACTCATACGCGATATCGAGCAGCGGCGACTGGAGTGCTTGGTGTGCGTGGAGGCGATCAAGGCGCACCAGCCGACGTGGTCCTGCCAGAACTGCTATCACGTCCTTCACCTTAAGTGCACTATTACCTGGGCGAGCAGCTCCAAGTCTGATGTCGGCTGGCGGTGTCCGGCATGTCAAAATGTCCTCCAAGAGCTGCCGCGCGAGTATCTCTGCTTTTGCGGAAAACTCAAAAACCCGCCGGTGTCCCGTACGGAACTGGCGCACAGCTGCGGTGAGGTCTGCTGTCGGATTGAGGGCTGCAGCCATGCTTGCACCCTTCTATGCCACCCGGGACCCTGCCCGCCGTGCCAGGCCAATGTGGTGCGCAGCTGTGGTTGCGGCCGCAGTTCCAAGACTATGCAGTGCGCCATGAAGGAAGATCTCCTCTGCGGCGAGATCTGTGACAAGGTGCTTAACTGTGCCGAGCATCGGTGTCGTGCCGAGTGTCATGCGGGCAAGTGTACAGCTTGTGCGGAGCAAGTGGAGCAGCACTGTCACTGCGGCAAGCAGGAGCGCCAAGTGCAGTGTACACGCGAGAACCAGGACAAGCGGAGTTACTCTTGCAAGGAGAGTTGCGGGAAGCCCTTGCCTTGCGGCAACCACAAGTGCAAGGACTCGTGTCACGCGGGCAGTTGTAGGCCTTGTAAGCTAAGTCCAGAACAGATAACAAGCTGTCCTTGCGGTAAGATGCCGGTCCCGGCTGCCCAACGCTCGAGCTGCCTAGATCCCATACCAACCTGCGAGGGAATCTGTTCGAGGACTCTACGTTGCGGAAAGCCAGCTCATCCCCATCAATGCGCCAGCAAGTGCCACCTGGGTCAGTGTCCGCCGTGTCAGAAGCAAACGGCCGTCAAGTGTCGCTGCGGCCACATGGATCAAATGATCAAGTGCCGGCAGTTGTCCACGCGGGCGGACGATGCCCGCTGCAAGCGACGCTGCACGAAGAAGCGGAGTTGCGGTAAGCACAAGTGCAACGCGGAGTGCTGCATCGACATTGACCACGCCTGCCCGCTGCCCTGCAACCGGACGCTGAGCTGCGGCAAGCACAAGTGCGATCAGCCCTGCCATCGAGGCAATTGTCCGCCGTGCTATCGCAGCAGTTTCGAGGAGCTCTACTGCGAGTGCGGAGCCGAAGTGATATATCCGCCGGTACCGTGCGGCACCAAGAAGCCGCTCTGCAAGCGACCCTGCTCCCGATCGCATCCCTGCGAGCATCCGCCGCAGCACAACTGCCATTCGGCGGCCACCTGTCCGCCCTGCATGATGTTCACCACCAAGTTCTGCCACGGTGGCCATGAGCAGCGCAAGACAATTCCCTGCTCGCAGGCCAACTTTAGCTGTGGCCTGGCGTGTGGCAAGCCTTTGCCATGCGGTCGTCATAAGTGCATAAAGCCGTGTCACGAGGGCGCCTGTCAGAATGCCGGCGAGGTGTGCCGCCAGAGCTGCACTAAGCCGCGGACGCTCTGCGGTCATAAGTGTGCCGCTGCCTGTCATGAGGGCGCCTGTCCCGAAACGCCGTGCAAGGAGTTGGTGGAGGTTCAGTGTGAGTGCGGCCACCGGAAGCAGAGTCGGAGCTGCCAGGAGCTGGCCAGAGAGCACAGTCGGATTGCCACCGCCCAGCTGGCCTCCTCCATGGCGGAGATGTCGCGCGGCAACTACATGGAGCTGAGCGAAATCCTGGCCCCGGCCAAGACCAGCAAATCGAACAGAACGTTGGACTGCAACGATGAGTGCCGTTTGCTGGAGCGTAATCGTCGGTTAGCATCTGCCCTGTCATCGGGCAACCCGGACACAAAGCAAAAGTCGCTGACCAAGTACTCGGAATTTGTTCGCGGCTTTGCCAAGAGGAATCCGGCTTTGACCAAGAGCGTATACGAGACGCTGAGTGATCTGGTGAAGCTAGCCAAGGAGAGCAAGCAGCGGTCGCGGAGTCACTCCTTCCCCACAATGAACCGCGAAAAGAGGCAATTGGTGCATGAGCTGTGCGAGATATTTGGCATTGAATCAGTGTCCTACGACAAGGAGCCCAATCGGAATGTTGTGGCCACAGCCCACAAGGAGAGGtgcTGGCTGCCTGCCACGAGCATCATGGAGGTGCTGGCTCGTGAGTCTGGACAACGTCGAGTCCCTGTGCCCAGCAACAATGCATGGAGCTTAAAGAAATAG
Protein Sequence
MDEYWQQLTNGGFIQQHNLGGGSSPTASAGTMQHPLSSANNTNYNIGGGGGAFGLNPPVASLGNSNSFGHLYSQPMFPSYQNGDGAAAFSNNYDDTFSNLYTPFGNNPFDFSSSKLQASAPEFVPNVAKLSLNEVPAAAAAATTPNGNRNITASQETAISVTGAPRAPQPGGSGVSGGGGEPHHVRLSANNYERDRGDRDSRPGSTRQQRRSDYRDDREDRYERNERKKPQKQQRYDNHRSNKRRDDWNRNRDRINGFPRAADELDTSNESAQPSPEKQQTTQQQQQQISPRRSMPPPPAADNEKLSQREKLIRDIEQRRLECLVCVEAIKAHQPTWSCQNCYHVLHLKCTITWASSSKSDVGWRCPACQNVLQELPREYLCFCGKLKNPPVSRTELAHSCGEVCCRIEGCSHACTLLCHPGPCPPCQANVVRSCGCGRSSKTMQCAMKEDLLCGEICDKVLNCAEHRCRAECHAGKCTACAEQVEQHCHCGKQERQVQCTRENQDKRSYSCKESCGKPLPCGNHKCKDSCHAGSCRPCKLSPEQITSCPCGKMPVPAAQRSSCLDPIPTCEGICSRTLRCGKPAHPHQCASKCHLGQCPPCQKQTAVKCRCGHMDQMIKCRQLSTRADDARCKRRCTKKRSCGKHKCNAECCIDIDHACPLPCNRTLSCGKHKCDQPCHRGNCPPCYRSSFEELYCECGAEVIYPPVPCGTKKPLCKRPCSRSHPCEHPPQHNCHSAATCPPCMMFTTKFCHGGHEQRKTIPCSQANFSCGLACGKPLPCGRHKCIKPCHEGACQNAGEVCRQSCTKPRTLCGHKCAAACHEGACPETPCKELVEVQCECGHRKQSRSCQELAREHSRIATAQLASSMAEMSRGNYMELSEILAPAKTSKSNRTLDCNDECRLLERNRRLASALSSGNPDTKQKSLTKYSEFVRGFAKRNPALTKSVYETLSDLVKLAKESKQRSRSHSFPTMNREKRQLVHELCEIFGIESVSYDKEPNRNVVATAHKERCWLPATSIMEVLARESGQRRVPVPSNNAWSLKK